Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1737 ATGTTTTCGTGGCTGGCAAGGATGGCGTCGGCTTGTTGGAAACCAGTGAGGCGGTATGCCCGTATGAACAAGGATGATGATGAAGATTGTTCTTTAGAGGACTCTTTGTTGTGGAGCAGAGAGCTTGAAAAGCACTCTTATGGGGAATTTTCTTTTGCTGTGGTTCAGGCTAATGAGGTAATTGAGGATAATAGTCAGGTTGAGACTGGCCCAGATGCCACTTTCGTCGGCGTTTATGATGGCCATGGTGGCCCTGATGCTTCTCGCTTTATCTGTGATCATCTTTTCAGGAATCTAATGAGGCTTGCTCAAGAGAATGGAAATATAACTGAAGATATCCTTCGAAGTGCATTTTCTGCAACTGAGGAAGGGTTTCTTACTCTTGTTCGTCGGTCATGGGGAATAAAGCCAACAATTGCAGCTATGGGATCTTGTTGCCTGGTGGGAGTTATCTGGAGAGGTACATTATACGTCGGTAACGTCGGTGATTCCCGGGCTGTTATTGGTTCTTTAGGTAAATCTAATAAGATAGTTGCAGAACAGTTGACAAGGGATCATAATGCAAGTATCGAGGAGGTTAGACAAGAACTCAGGTCCTTGCATCCTGATGACTCACATATCGTTGTTATGAAGCACGGAGTCTGGCGTATTAAAGGCATTATTCAGGTTTCCAGATCGATAGGTGATGCATATTTAAAAAAGCCAGAGTTTTCTCTTGATCCATCCTTTCCACGATTCCACCTTGCGGAGCCTCTTCGACGGCCTGTTCTTACTGCGGAACCATCGTTAAGTACAAGAGTTCTACAACCTAATGACAAATTTCTCATATTTGCATCTGATGGCCTATGGGAGCATCTAACGAATCAACAAGCTGTCGAGATTGTGTATAATAACCCAAGAGCAGGAATTGCAAAAAGACTTGTTAAAACAGCGCTAACTGAGGCTGCAAGGAAGAGGGAAATGAGATATGATGATCTGAAGAAGCTCGAAAAGGGCATACGACGGTTTTTTCATGATGATATCACAGTTGTTGTCATCTTTCTGGACTATGAGTTGCAAGGGAAGAAGGCACGTGTGCCAGAATTATCTGTTCGTGGGTTTACTGATATCGTTGGACCGTCAAATTTCAATGTTTTTCGAGGCATTGATGAGAATGGAAGGTCTGTTGGGTGA 1173 43.65 MFSWLARMASACWKPVRRYARMNKDDDEDCSLEDSLLWSRELEKHSYGEFSFAVVQANEVIEDNSQVETGPDATFVGVYDGHGGPDASRFICDHLFRNLMRLAQENGNITEDILRSAFSATEEGFLTLVRRSWGIKPTIAAMGSCCLVGVIWRGTLYVGNVGDSRAVIGSLGKSNKIVAEQLTRDHNASIEEVRQELRSLHPDDSHIVVMKHGVWRIKGIIQVSRSIGDAYLKKPEFSLDPSFPRFHLAEPLRRPVLTAEPSLSTRVLQPNDKFLIFASDGLWEHLTNQQAVEIVYNNPRAGIAKRLVKTALTEAARKREMRYDDLKKLEKGIRRFFHDDITVVVIFLDYELQGKKARVPELSVRGFTDIVGPSNFNVFRGIDENGRSVG 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30917255 30920135 + CcPI632755_10g017370.1 Cco10g1737 190695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1737 390 FunFam Probable protein phosphatase 2C 42 40 356 - -
Cco10g1737 390 SUPERFAMILY PP2C-like 53 349 IPR036457 -
Cco10g1737 390 ProSitePatterns PPM-type phosphatase domain signature. 75 83 IPR000222 GO:0043169(InterPro)
Cco10g1737 390 Gene3D - 27 358 IPR036457 -
Cco10g1737 390 SMART PP2C_4 43 346 IPR001932 -
Cco10g1737 390 Pfam Protein phosphatase 2C 69 317 IPR001932 -
Cco10g1737 390 CDD PP2Cc 47 348 IPR001932 -
Cco10g1737 390 ProSiteProfiles PPM-type phosphatase domain profile. 49 348 IPR001932 -
Cco10g1737 390 PANTHER PROTEIN PHOSPHATASE 40 347 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0737 Cco-Chr2:7610993 Cco10g1737 Cco-Chr10:30917255 8.70E-118 dispersed
Cco10g1737 Cco-Chr10:30917255 Cco10g2062 Cco-Chr10:34000408 1.30E-116 dispersed
Cco10g1737 Cco-Chr10:30917255 Cco04g1830 Cco-Chr4:33120802 1.40E-118 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1737 K01102 - csv:101222146 759.985