Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g1738 | ATGACCGAAAAGTTAGACAGCTGGATCCAACGAGAATGTGACGCACTCAGTCCATTGCTATTGCTATTGCCATTGCCATTGCCACCACCTCGACAGTTTCAAGAACACGAAGCTTTCTTGATTTCTAAGCTCAGAAATCATGATCGAGCAAACATTTTGCGACAATTCACAATGGCAGATTCCGAGGACATTCAGCCTCTCGTTTGTGATAATGGAACAGGGATGGTCAAGGCTGGATTTGCTGGAGACGATGCTCCAAGGGCTGTATTCCCTAGCATCGTTGGTCGCCCCAGACACACCGGTGTTATGGTTGGTATGGGCCAAAAGGATGCCTATGTTGGTGATGAAGCTCAATCGAAGAGAGGTATTTTGACTTTAAAATATCCCATTGAGCATGGTATCGTTAGCAATTGGGATGATATGGAGAAAATTTGGCATCACACTTTCTACAACGAGCTTCGAGTTGCTCCAGAAGAGCATCCAGTTCTGCTCACCGAAGCACCCTTGAATCCCAAGGCGAATAGAGAGAAAATGACCCAAATTATGTTTGAGACTTTCAACACCCCCGCTATGTATGTTGCTATCCAGGCCGTCCTTTCCCTTTATGCCAGTGGTCGCACAACCGGGATCGTTTTGGATTCTGGTGATGGTGTCAGCCACACAGTTCCAATCTACGAAGGGTATGCTCTCCCACATGCCATCCTCCGTCTAGACCTGGCTGGCCGTGATCTCACAGATGCTCTAATGAAAATCTTGACTGAACGTGGTTACTCTTTCACCACCACCGCCGAGCGTGAAATTGTGAGAGATATGAAGGAGAAACTAGCTTACATAGCCCTGGACTACGAGCAGGAGCTAGAGACATCAAAAACCAGCTCTTCAGTGGAGAAGAGCTATGAACTACCAGATGGACAGGTGATCACCATTGGTGCTGAAAGATTCCGATGCCCTGAAGTCCTGTTCCAGCCATCCATGATAGGAATGGAAGCAGCTGGTATCCATGAAACCACATACAATTCAATCATGAAGTGTGATGTCGATATTAGAAAGGATCTCTACGGAAACATTGTCCTCAGTGGTGGTTCCACTATGTTCCCTGGCATTGCTGACAGGATGAGCAAGGAGATCACTGCATTGGCTCCTAGTAGCATGAAGATCAAAGTGGTAGCACCACCTGAAAGAAAGTACAGTGTCTGGATTGGAGGCTCCATTTTAGCTTCCCTCAGCACTTTCCAACAGATGTGGATTGCTAAGGCAGAGTATGATGAATCTGGGCCATCAATTGTCCACAGGAAATGCTTCTGA | 1305 | 46.82 | MTEKLDSWIQRECDALSPLLLLLPLPLPPPRQFQEHEAFLISKLRNHDRANILRQFTMADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF | 434 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 30921785 | 30925464 | - | CcPI632755_10g017380.1 | Cco10g1738 | 190696 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g1738 | 434 | CDD | NBD_sugar-kinase_HSP70_actin | 67 | 240 | - | - | |
Cco10g1738 | 434 | ProSitePatterns | Actins signature 1. | 112 | 122 | IPR004001 | - | |
Cco10g1738 | 434 | ProSitePatterns | Actins and actin-related proteins signature. | 163 | 175 | IPR020902 | - | |
Cco10g1738 | 434 | FunFam | Actin, alpha skeletal muscle | 93 | 130 | - | - | |
Cco10g1738 | 434 | SUPERFAMILY | Actin-like ATPase domain | 63 | 212 | IPR043129 | - | |
Cco10g1738 | 434 | PRINTS | Actin signature | 108 | 119 | IPR004000 | - | |
Cco10g1738 | 434 | PRINTS | Actin signature | 174 | 187 | IPR004000 | - | |
Cco10g1738 | 434 | PRINTS | Actin signature | 199 | 218 | IPR004000 | - | |
Cco10g1738 | 434 | PRINTS | Actin signature | 85 | 94 | IPR004000 | - | |
Cco10g1738 | 434 | PRINTS | Actin signature | 120 | 142 | IPR004000 | - | |
Cco10g1738 | 434 | PRINTS | Actin signature | 295 | 311 | IPR004000 | - | |
Cco10g1738 | 434 | ProSitePatterns | Actins signature 2. | 415 | 423 | IPR004001 | - | |
Cco10g1738 | 434 | Pfam | Actin | 62 | 434 | IPR004000 | - | |
Cco10g1738 | 434 | SMART | actin_3 | 64 | 434 | IPR004000 | - | |
Cco10g1738 | 434 | Gene3D | Actin; Chain A, domain 4 | 239 | 330 | - | - | |
Cco10g1738 | 434 | Gene3D | - | 67 | 428 | - | - | |
Cco10g1738 | 434 | PANTHER | ACTIN | 65 | 426 | IPR004000 | GO:0005737(PANTHER) | |
Cco10g1738 | 434 | Gene3D | - | 197 | 397 | - | - | |
Cco10g1738 | 434 | FunFam | Major actin | 317 | 397 | - | - | |
Cco10g1738 | 434 | FunFam | Putative actin-related protein 5 | 398 | 426 | - | - | |
Cco10g1738 | 434 | SUPERFAMILY | Actin-like ATPase domain | 206 | 434 | IPR043129 | - | |
Cco10g1738 | 434 | FunFam | Actin, alpha skeletal muscle | 60 | 225 | - | - | |
Cco10g1738 | 434 | FunFam | Actin, muscle | 239 | 330 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g2157 | Cco-Chr2:34320060 | Cco10g1738 | Cco-Chr10:30921785 | 3.60E-217 | dispersed | |
Cco04g1320 | Cco-Chr4:28536646 | Cco10g1738 | Cco-Chr10:30921785 | 2.00E-215 | dispersed | |
Cco07g0325 | Cco-Chr7:3326068 | Cco10g1738 | Cco-Chr10:30921785 | 1.30E-217 | dispersed | |
Cco09g1453 | Cco-Chr9:19627487 | Cco10g1738 | Cco-Chr10:30921785 | 1.00E-211 | dispersed | |
Cco09g2177 | Cco-Chr9:36136332 | Cco10g1738 | Cco-Chr10:30921785 | 1.80E-216 | dispersed | |
Cco10g1738 | Cco-Chr10:30921785 | Cco11g0743 | Cco-Chr11:8225807 | 4.50E-94 | dispersed | |
Cco10g1738 | Cco-Chr10:30921785 | Cco04g1010 | Cco-Chr4:25717641 | 1.10E-217 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g1738 | K10355 | - | csv:101221679 | 750.74 |