Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1738 ATGACCGAAAAGTTAGACAGCTGGATCCAACGAGAATGTGACGCACTCAGTCCATTGCTATTGCTATTGCCATTGCCATTGCCACCACCTCGACAGTTTCAAGAACACGAAGCTTTCTTGATTTCTAAGCTCAGAAATCATGATCGAGCAAACATTTTGCGACAATTCACAATGGCAGATTCCGAGGACATTCAGCCTCTCGTTTGTGATAATGGAACAGGGATGGTCAAGGCTGGATTTGCTGGAGACGATGCTCCAAGGGCTGTATTCCCTAGCATCGTTGGTCGCCCCAGACACACCGGTGTTATGGTTGGTATGGGCCAAAAGGATGCCTATGTTGGTGATGAAGCTCAATCGAAGAGAGGTATTTTGACTTTAAAATATCCCATTGAGCATGGTATCGTTAGCAATTGGGATGATATGGAGAAAATTTGGCATCACACTTTCTACAACGAGCTTCGAGTTGCTCCAGAAGAGCATCCAGTTCTGCTCACCGAAGCACCCTTGAATCCCAAGGCGAATAGAGAGAAAATGACCCAAATTATGTTTGAGACTTTCAACACCCCCGCTATGTATGTTGCTATCCAGGCCGTCCTTTCCCTTTATGCCAGTGGTCGCACAACCGGGATCGTTTTGGATTCTGGTGATGGTGTCAGCCACACAGTTCCAATCTACGAAGGGTATGCTCTCCCACATGCCATCCTCCGTCTAGACCTGGCTGGCCGTGATCTCACAGATGCTCTAATGAAAATCTTGACTGAACGTGGTTACTCTTTCACCACCACCGCCGAGCGTGAAATTGTGAGAGATATGAAGGAGAAACTAGCTTACATAGCCCTGGACTACGAGCAGGAGCTAGAGACATCAAAAACCAGCTCTTCAGTGGAGAAGAGCTATGAACTACCAGATGGACAGGTGATCACCATTGGTGCTGAAAGATTCCGATGCCCTGAAGTCCTGTTCCAGCCATCCATGATAGGAATGGAAGCAGCTGGTATCCATGAAACCACATACAATTCAATCATGAAGTGTGATGTCGATATTAGAAAGGATCTCTACGGAAACATTGTCCTCAGTGGTGGTTCCACTATGTTCCCTGGCATTGCTGACAGGATGAGCAAGGAGATCACTGCATTGGCTCCTAGTAGCATGAAGATCAAAGTGGTAGCACCACCTGAAAGAAAGTACAGTGTCTGGATTGGAGGCTCCATTTTAGCTTCCCTCAGCACTTTCCAACAGATGTGGATTGCTAAGGCAGAGTATGATGAATCTGGGCCATCAATTGTCCACAGGAAATGCTTCTGA 1305 46.82 MTEKLDSWIQRECDALSPLLLLLPLPLPPPRQFQEHEAFLISKLRNHDRANILRQFTMADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30921785 30925464 - CcPI632755_10g017380.1 Cco10g1738 190696

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1738 434 CDD NBD_sugar-kinase_HSP70_actin 67 240 - -
Cco10g1738 434 ProSitePatterns Actins signature 1. 112 122 IPR004001 -
Cco10g1738 434 ProSitePatterns Actins and actin-related proteins signature. 163 175 IPR020902 -
Cco10g1738 434 FunFam Actin, alpha skeletal muscle 93 130 - -
Cco10g1738 434 SUPERFAMILY Actin-like ATPase domain 63 212 IPR043129 -
Cco10g1738 434 PRINTS Actin signature 108 119 IPR004000 -
Cco10g1738 434 PRINTS Actin signature 174 187 IPR004000 -
Cco10g1738 434 PRINTS Actin signature 199 218 IPR004000 -
Cco10g1738 434 PRINTS Actin signature 85 94 IPR004000 -
Cco10g1738 434 PRINTS Actin signature 120 142 IPR004000 -
Cco10g1738 434 PRINTS Actin signature 295 311 IPR004000 -
Cco10g1738 434 ProSitePatterns Actins signature 2. 415 423 IPR004001 -
Cco10g1738 434 Pfam Actin 62 434 IPR004000 -
Cco10g1738 434 SMART actin_3 64 434 IPR004000 -
Cco10g1738 434 Gene3D Actin; Chain A, domain 4 239 330 - -
Cco10g1738 434 Gene3D - 67 428 - -
Cco10g1738 434 PANTHER ACTIN 65 426 IPR004000 GO:0005737(PANTHER)
Cco10g1738 434 Gene3D - 197 397 - -
Cco10g1738 434 FunFam Major actin 317 397 - -
Cco10g1738 434 FunFam Putative actin-related protein 5 398 426 - -
Cco10g1738 434 SUPERFAMILY Actin-like ATPase domain 206 434 IPR043129 -
Cco10g1738 434 FunFam Actin, alpha skeletal muscle 60 225 - -
Cco10g1738 434 FunFam Actin, muscle 239 330 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1738 K10355 - - csv:101221679 750.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2157 Cco-Chr2:34320060 Cco10g1738 Cco-Chr10:30921785 3.60E-217 dispersed
Cco04g1320 Cco-Chr4:28536646 Cco10g1738 Cco-Chr10:30921785 2.00E-215 dispersed
Cco07g0325 Cco-Chr7:3326068 Cco10g1738 Cco-Chr10:30921785 1.30E-217 dispersed
Cco09g1453 Cco-Chr9:19627487 Cco10g1738 Cco-Chr10:30921785 1.00E-211 dispersed
Cco09g2177 Cco-Chr9:36136332 Cco10g1738 Cco-Chr10:30921785 1.80E-216 dispersed
Cco10g1738 Cco-Chr10:30921785 Cco11g0743 Cco-Chr11:8225807 4.50E-94 dispersed
Cco10g1738 Cco-Chr10:30921785 Cco04g1010 Cco-Chr4:25717641 1.10E-217 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1271 . . . . Bpe04g01456 Bpe03g01148 . . Cmo06g00095 Cmo14g00419 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g02242 . Blo09g00434 Bda03g01592 Bda05g01088 . . . . Sed14g0483 . . Cma06g00102 . Car06g00084 Car14g00382 Cpe03g00368 . Bhi11g02537 Tan08g1503 Cmetu10g1839 Lac10g2624 Hepe05g0523 . . Cla10g01670 Cam10g1718 Cec10g1770 Cco10g1738 Clacu10g1739 Cmu10g2489 Cre10g1871 Lsi03g01737 Csa03g03574 Chy04g01779 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco04g1010 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 7.6e-215 743.0
Cco10g1738 . 58 434 Cytoskeleton Gene Families AT2G37620 96.8 7.6e-215 743.0
Cco02g2157 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 3.8e-214 740.7
Cco04g1320 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.5e-213 738.0
Cco07g0325 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 2.5e-213 738.0
Cco09g2177 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.2e-212 735.7
Cco09g1453 . 117 493 Cytoskeleton Gene Families AT2G37620 94.7 2.1e-212 734.9
Cco02g0067 . 1 360 Cytoskeleton Gene Families AT2G37620 95.6 3.9e-203 704.1
Cco09g2177 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 2.2e-214 741.5
Cco02g2157 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 4.9e-214 740.3
Cco10g1738 . 58 434 Cytoskeleton Gene Families AT5G59370 97.1 6.5e-214 740.0
Cco07g0325 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 1.9e-213 738.4
Cco04g1010 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 7.1e-213 736.5
Cco09g1453 . 117 493 Cytoskeleton Gene Families AT5G59370 93.9 8.7e-211 729.6
Cco04g1320 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.3e-210 727.6
Cco02g0067 . 1 360 Cytoskeleton Gene Families AT5G59370 94.4 5.3e-200 693.7
Cco09g2177 . 1 377 Cytoskeleton Gene Families AT3G46520 97.3 1.0e-214 742.7
Cco10g1738 . 58 434 Cytoskeleton Gene Families AT3G46520 97.3 2.9e-214 741.1
Cco07g0325 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 8.4e-214 739.6
Cco02g2157 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 1.4e-213 738.8
Cco04g1010 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 3.2e-213 737.6
Cco09g1453 . 117 493 Cytoskeleton Gene Families AT3G46520 94.2 3.9e-211 730.7
Cco04g1320 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.5e-210 728.8
Cco02g0067 . 1 360 Cytoskeleton Gene Families AT3G46520 94.7 2.4e-200 694.9
Cco10g1738 . 58 434 Cytoskeleton Gene Families AT3G12110 97.1 3.4e-215 744.2
Cco07g0325 . 1 377 Cytoskeleton Gene Families AT3G12110 96.8 5.8e-215 743.4
Cco02g2157 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 1.7e-214 741.9
Cco04g1010 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 3.8e-214 740.7
Cco09g2177 . 1 377 Cytoskeleton Gene Families AT3G12110 96.3 1.9e-213 738.4
Cco04g1320 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 9.3e-213 736.1
Cco09g1453 . 117 493 Cytoskeleton Gene Families AT3G12110 95.0 2.7e-212 734.6
Cco02g0067 . 1 360 Cytoskeleton Gene Families AT3G12110 95.6 1.5e-202 702.2
Cco09g2177 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 2.8e-209 724.5
Cco04g1320 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 4.8e-209 723.8
Cco04g1010 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 1.8e-208 721.8
Cco07g0325 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 1.8e-208 721.8
Cco10g1738 . 58 434 Cytoskeleton Gene Families AT3G18780 92.3 1.8e-208 721.8
Cco02g2157 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 9.0e-208 719.5
Cco09g1453 . 117 493 Cytoskeleton Gene Families AT3G18780 92.0 1.2e-207 719.2
Cco02g0067 . 1 360 Cytoskeleton Gene Families AT3G18780 93.6 2.0e-199 691.8
Cco09g2177 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 9.6e-210 726.1
Cco04g1320 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.6e-209 725.3
Cco07g0325 . 1 377 Cytoskeleton Gene Families AT1G49240 92.8 6.3e-209 723.4
Cco10g1738 . 58 434 Cytoskeleton Gene Families AT1G49240 92.6 6.3e-209 723.4
Cco04g1010 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 4.1e-208 720.7
Cco09g1453 . 117 493 Cytoskeleton Gene Families AT1G49240 92.3 4.1e-208 720.7
Cco02g2157 . 1 377 Cytoskeleton Gene Families AT1G49240 91.8 2.0e-207 718.4
Cco02g0067 . 1 360 Cytoskeleton Gene Families AT1G49240 93.6 2.0e-199 691.8
Cco04g1320 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 8.1e-217 749.6
Cco09g1453 . 117 493 Cytoskeleton Gene Families AT5G09810 95.8 2.9e-214 741.1
Cco10g1738 . 58 434 Cytoskeleton Gene Families AT5G09810 96.6 6.5e-214 740.0
Cco04g1010 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 1.9e-213 738.4
Cco02g2157 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.2e-213 737.6
Cco07g0325 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 4.2e-213 737.3
Cco09g2177 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 3.5e-212 734.2
Cco02g0067 . 1 360 Cytoskeleton Gene Families AT5G09810 98.6 1.3e-206 715.7
Cco11g0226 . 1 133 Cytoskeleton Gene Families AT2G19760 76.7 8.7e-57 216.5
Cco09g0025 . 1 131 Cytoskeleton Gene Families AT2G19760 72.5 3.6e-55 211.1
Cco07g1416 . 1 131 Cytoskeleton Gene Families AT2G19760 73.3 1.8e-54 208.8
Cco11g1554 . 305 435 Cytoskeleton Gene Families AT2G19760 72.5 1.2e-53 206.1
Cco11g0227 . 1 117 Cytoskeleton Gene Families AT2G19760 76.9 7.9e-50 193.4
Cco11g0226 . 1 133 Cytoskeleton Gene Families AT4G29350 76.7 1.5e-56 215.7
Cco09g0025 . 1 131 Cytoskeleton Gene Families AT4G29350 73.3 1.4e-54 209.1
Cco07g1416 . 1 131 Cytoskeleton Gene Families AT4G29350 71.8 2.0e-53 205.3
Cco11g1554 . 305 435 Cytoskeleton Gene Families AT4G29350 70.2 2.4e-51 198.4
Cco11g0227 . 1 117 Cytoskeleton Gene Families AT4G29350 76.9 1.1e-48 189.5
Cco11g0227 . 1 87 Cytoskeleton Gene Families AT5G56600 78.2 5.7e-38 153.7
Cco11g0226 . 1 133 Cytoskeleton Gene Families AT4G29340 84.3 1.5e-64 242.3
Cco09g0025 . 1 131 Cytoskeleton Gene Families AT4G29340 73.9 3.0e-57 218.0
Cco11g1554 . 305 435 Cytoskeleton Gene Families AT4G29340 72.4 4.1e-54 207.6
Cco07g1416 . 1 131 Cytoskeleton Gene Families AT4G29340 67.9 5.0e-52 200.7
Cco11g0227 . 1 117 Cytoskeleton Gene Families AT4G29340 65.8 3.0e-44 174.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276