Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1738 ATGACCGAAAAGTTAGACAGCTGGATCCAACGAGAATGTGACGCACTCAGTCCATTGCTATTGCTATTGCCATTGCCATTGCCACCACCTCGACAGTTTCAAGAACACGAAGCTTTCTTGATTTCTAAGCTCAGAAATCATGATCGAGCAAACATTTTGCGACAATTCACAATGGCAGATTCCGAGGACATTCAGCCTCTCGTTTGTGATAATGGAACAGGGATGGTCAAGGCTGGATTTGCTGGAGACGATGCTCCAAGGGCTGTATTCCCTAGCATCGTTGGTCGCCCCAGACACACCGGTGTTATGGTTGGTATGGGCCAAAAGGATGCCTATGTTGGTGATGAAGCTCAATCGAAGAGAGGTATTTTGACTTTAAAATATCCCATTGAGCATGGTATCGTTAGCAATTGGGATGATATGGAGAAAATTTGGCATCACACTTTCTACAACGAGCTTCGAGTTGCTCCAGAAGAGCATCCAGTTCTGCTCACCGAAGCACCCTTGAATCCCAAGGCGAATAGAGAGAAAATGACCCAAATTATGTTTGAGACTTTCAACACCCCCGCTATGTATGTTGCTATCCAGGCCGTCCTTTCCCTTTATGCCAGTGGTCGCACAACCGGGATCGTTTTGGATTCTGGTGATGGTGTCAGCCACACAGTTCCAATCTACGAAGGGTATGCTCTCCCACATGCCATCCTCCGTCTAGACCTGGCTGGCCGTGATCTCACAGATGCTCTAATGAAAATCTTGACTGAACGTGGTTACTCTTTCACCACCACCGCCGAGCGTGAAATTGTGAGAGATATGAAGGAGAAACTAGCTTACATAGCCCTGGACTACGAGCAGGAGCTAGAGACATCAAAAACCAGCTCTTCAGTGGAGAAGAGCTATGAACTACCAGATGGACAGGTGATCACCATTGGTGCTGAAAGATTCCGATGCCCTGAAGTCCTGTTCCAGCCATCCATGATAGGAATGGAAGCAGCTGGTATCCATGAAACCACATACAATTCAATCATGAAGTGTGATGTCGATATTAGAAAGGATCTCTACGGAAACATTGTCCTCAGTGGTGGTTCCACTATGTTCCCTGGCATTGCTGACAGGATGAGCAAGGAGATCACTGCATTGGCTCCTAGTAGCATGAAGATCAAAGTGGTAGCACCACCTGAAAGAAAGTACAGTGTCTGGATTGGAGGCTCCATTTTAGCTTCCCTCAGCACTTTCCAACAGATGTGGATTGCTAAGGCAGAGTATGATGAATCTGGGCCATCAATTGTCCACAGGAAATGCTTCTGA 1305 46.82 MTEKLDSWIQRECDALSPLLLLLPLPLPPPRQFQEHEAFLISKLRNHDRANILRQFTMADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30921785 30925464 - CcPI632755_10g017380.1 Cco10g1738 190696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1738 434 CDD NBD_sugar-kinase_HSP70_actin 67 240 - -
Cco10g1738 434 ProSitePatterns Actins signature 1. 112 122 IPR004001 -
Cco10g1738 434 ProSitePatterns Actins and actin-related proteins signature. 163 175 IPR020902 -
Cco10g1738 434 FunFam Actin, alpha skeletal muscle 93 130 - -
Cco10g1738 434 SUPERFAMILY Actin-like ATPase domain 63 212 IPR043129 -
Cco10g1738 434 PRINTS Actin signature 108 119 IPR004000 -
Cco10g1738 434 PRINTS Actin signature 174 187 IPR004000 -
Cco10g1738 434 PRINTS Actin signature 199 218 IPR004000 -
Cco10g1738 434 PRINTS Actin signature 85 94 IPR004000 -
Cco10g1738 434 PRINTS Actin signature 120 142 IPR004000 -
Cco10g1738 434 PRINTS Actin signature 295 311 IPR004000 -
Cco10g1738 434 ProSitePatterns Actins signature 2. 415 423 IPR004001 -
Cco10g1738 434 Pfam Actin 62 434 IPR004000 -
Cco10g1738 434 SMART actin_3 64 434 IPR004000 -
Cco10g1738 434 Gene3D Actin; Chain A, domain 4 239 330 - -
Cco10g1738 434 Gene3D - 67 428 - -
Cco10g1738 434 PANTHER ACTIN 65 426 IPR004000 GO:0005737(PANTHER)
Cco10g1738 434 Gene3D - 197 397 - -
Cco10g1738 434 FunFam Major actin 317 397 - -
Cco10g1738 434 FunFam Putative actin-related protein 5 398 426 - -
Cco10g1738 434 SUPERFAMILY Actin-like ATPase domain 206 434 IPR043129 -
Cco10g1738 434 FunFam Actin, alpha skeletal muscle 60 225 - -
Cco10g1738 434 FunFam Actin, muscle 239 330 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2157 Cco-Chr2:34320060 Cco10g1738 Cco-Chr10:30921785 3.60E-217 dispersed
Cco04g1320 Cco-Chr4:28536646 Cco10g1738 Cco-Chr10:30921785 2.00E-215 dispersed
Cco07g0325 Cco-Chr7:3326068 Cco10g1738 Cco-Chr10:30921785 1.30E-217 dispersed
Cco09g1453 Cco-Chr9:19627487 Cco10g1738 Cco-Chr10:30921785 1.00E-211 dispersed
Cco09g2177 Cco-Chr9:36136332 Cco10g1738 Cco-Chr10:30921785 1.80E-216 dispersed
Cco10g1738 Cco-Chr10:30921785 Cco11g0743 Cco-Chr11:8225807 4.50E-94 dispersed
Cco10g1738 Cco-Chr10:30921785 Cco04g1010 Cco-Chr4:25717641 1.10E-217 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1738 K10355 - csv:101221679 750.74