Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g1744 | ATGGGTGATGAAATCTTTGATGCAATGAACCTTGACTTGAATCTGGGTCCTATTCCAGAGCCGCTTTCGAATTCGGTTCCAAATGAAGATGTCAATTTAGCTGATTTGACAGAGGAACCTGTTCATAGATTTGGGGAAGCTATCAGGTTTAGGACAAGACAACGGTGGAGAAGGCGTCAAGTTCAAATTCCTTCTGAGACTCAGAATATTACAATGGAACTGAGTGAAATCATGGTCAATGCAGGCAATGGGAATGCATTGCAGCCATTACAGCCTGGTGAGGGTAGTATTACTGCTGAGGAAAGGAAAAATGAGACAGGGAAAACGTGTGAAATTAATAATGAAGCTTTGGAAGATGAAAAAACAGAGAATAAGAGTGATGTTGAAAAGGGCAGTGACTCTGATGGGAGTTTCTTTGATTGCAATATATGTCTGGATTTGGCTAGGGACCCCGTTGTAACTTGTTGCGGTCATCTATACTGCTGGCCGTGCCTTTATCGATGGTTACATCTACATTCAGAAGCCAAGGAATGTCCTGTATGTAAAGGAGAGGTTACTACGAAGAACGTGACTCCAATTTATGGTCGTGGCAGCAGTACCCCTGTGACTGAGGAGGATGCTACACTTAAGATTCCTCTAAGGCCCCATGCTCGGAAGGTTGAAAGTTTGAGACAAACCATCCAGAGGACTGCATTTAGTTTCCCAGTGGAGGATGTGATCCGACGATTAGGATACAGATTTGATGCCAATCGTGATCTAGACCAACCACCAGAGCCAGAGCCAGACAGTTCACATGAGACATTTGGAGATTTAGCACACACTGATGTGTCTAGCGTTGAGGCAGGGGAAACCCGTCTTCAATCTCTCCCAGTGCTTCGATCATTACTACACCGGACAAGAGTTTCTTCTCTCACTTCTGCATTTAATTCTGCTGATAGGCTTCCAGATGGTTTTTTGTATACTGATCCTCTCATTCCTAGAAGTCAAGAGCAGCCTCCTCCACCTGTTGAGGATAGAGATTCGTTCTCTAGCATTGCTGCCGTTATCAATTCAGAGAGTCAAATGGACACTGCTGTAGAAATTGATTCCATGGTCTCTATTTCAACATCATCCTCCAGAAGGAGAAATGATACTTTACAAGTTTCTGATGTAGACAGTGGAAACTCTCGAGCACCAAGACGGAGAAGATTGGCTTGA | 1197 | 43.94 | MGDEIFDAMNLDLNLGPIPEPLSNSVPNEDVNLADLTEEPVHRFGEAIRFRTRQRWRRRQVQIPSETQNITMELSEIMVNAGNGNALQPLQPGEGSITAEERKNETGKTCEINNEALEDEKTENKSDVEKGSDSDGSFFDCNICLDLARDPVVTCCGHLYCWPCLYRWLHLHSEAKECPVCKGEVTTKNVTPIYGRGSSTPVTEEDATLKIPLRPHARKVESLRQTIQRTAFSFPVEDVIRRLGYRFDANRDLDQPPEPEPDSSHETFGDLAHTDVSSVEAGETRLQSLPVLRSLLHRTRVSSLTSAFNSADRLPDGFLYTDPLIPRSQEQPPPPVEDRDSFSSIAAVINSESQMDTAVEIDSMVSISTSSSRRRNDTLQVSDVDSGNSRAPRRRRLA | 398 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 30984066 | 30985349 | + | CcPI632755_10g017440.1 | Cco10g1744 | 190702 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g1744 | 398 | MobiDBLite | consensus disorder prediction | 367 | 387 | - | - | |
Cco10g1744 | 398 | CDD | RING-HC_AtRMA-like | 139 | 182 | - | - | |
Cco10g1744 | 398 | FunFam | Zinc finger family protein | 122 | 195 | - | - | |
Cco10g1744 | 398 | ProSitePatterns | Zinc finger RING-type signature. | 156 | 165 | IPR017907 | - | |
Cco10g1744 | 398 | ProSiteProfiles | Zinc finger RING-type profile. | 141 | 182 | IPR001841 | - | |
Cco10g1744 | 398 | MobiDBLite | consensus disorder prediction | 367 | 398 | - | - | |
Cco10g1744 | 398 | Pfam | Zinc finger, C3HC4 type (RING finger) | 141 | 181 | IPR018957 | GO:0046872(InterPro) | |
Cco10g1744 | 398 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 93 | 196 | IPR013083 | - | |
Cco10g1744 | 398 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 108 | 342 | IPR045103 | GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)|GO:0071712(PANTHER) | |
Cco10g1744 | 398 | SMART | ring_2 | 141 | 181 | IPR001841 | - | |
Cco10g1744 | 398 | SUPERFAMILY | RING/U-box | 137 | 194 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g1453 | Cco-Chr5:17319374 | Cco10g1744 | Cco-Chr10:30984066 | 2.40E-07 | dispersed | |
Cco08g1720 | Cco-Chr8:28515573 | Cco10g1744 | Cco-Chr10:30984066 | 1.60E-26 | dispersed | |
Cco10g1744 | Cco-Chr10:30984066 | Cco11g1863 | Cco-Chr11:31316094 | 5.50E-22 | dispersed | |
Cco10g1255 | Cco-Chr10:25310896 | Cco10g1744 | Cco-Chr10:30984066 | 4.10E-34 | transposed | |
Cco10g1744 | Cco-Chr10:30984066 | Cco04g2081 | Cco-Chr4:34769210 | 1.90E-22 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g1744 | K10666 | - | csv:101220497 | 725.702 |