Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1744 ATGGGTGATGAAATCTTTGATGCAATGAACCTTGACTTGAATCTGGGTCCTATTCCAGAGCCGCTTTCGAATTCGGTTCCAAATGAAGATGTCAATTTAGCTGATTTGACAGAGGAACCTGTTCATAGATTTGGGGAAGCTATCAGGTTTAGGACAAGACAACGGTGGAGAAGGCGTCAAGTTCAAATTCCTTCTGAGACTCAGAATATTACAATGGAACTGAGTGAAATCATGGTCAATGCAGGCAATGGGAATGCATTGCAGCCATTACAGCCTGGTGAGGGTAGTATTACTGCTGAGGAAAGGAAAAATGAGACAGGGAAAACGTGTGAAATTAATAATGAAGCTTTGGAAGATGAAAAAACAGAGAATAAGAGTGATGTTGAAAAGGGCAGTGACTCTGATGGGAGTTTCTTTGATTGCAATATATGTCTGGATTTGGCTAGGGACCCCGTTGTAACTTGTTGCGGTCATCTATACTGCTGGCCGTGCCTTTATCGATGGTTACATCTACATTCAGAAGCCAAGGAATGTCCTGTATGTAAAGGAGAGGTTACTACGAAGAACGTGACTCCAATTTATGGTCGTGGCAGCAGTACCCCTGTGACTGAGGAGGATGCTACACTTAAGATTCCTCTAAGGCCCCATGCTCGGAAGGTTGAAAGTTTGAGACAAACCATCCAGAGGACTGCATTTAGTTTCCCAGTGGAGGATGTGATCCGACGATTAGGATACAGATTTGATGCCAATCGTGATCTAGACCAACCACCAGAGCCAGAGCCAGACAGTTCACATGAGACATTTGGAGATTTAGCACACACTGATGTGTCTAGCGTTGAGGCAGGGGAAACCCGTCTTCAATCTCTCCCAGTGCTTCGATCATTACTACACCGGACAAGAGTTTCTTCTCTCACTTCTGCATTTAATTCTGCTGATAGGCTTCCAGATGGTTTTTTGTATACTGATCCTCTCATTCCTAGAAGTCAAGAGCAGCCTCCTCCACCTGTTGAGGATAGAGATTCGTTCTCTAGCATTGCTGCCGTTATCAATTCAGAGAGTCAAATGGACACTGCTGTAGAAATTGATTCCATGGTCTCTATTTCAACATCATCCTCCAGAAGGAGAAATGATACTTTACAAGTTTCTGATGTAGACAGTGGAAACTCTCGAGCACCAAGACGGAGAAGATTGGCTTGA 1197 43.94 MGDEIFDAMNLDLNLGPIPEPLSNSVPNEDVNLADLTEEPVHRFGEAIRFRTRQRWRRRQVQIPSETQNITMELSEIMVNAGNGNALQPLQPGEGSITAEERKNETGKTCEINNEALEDEKTENKSDVEKGSDSDGSFFDCNICLDLARDPVVTCCGHLYCWPCLYRWLHLHSEAKECPVCKGEVTTKNVTPIYGRGSSTPVTEEDATLKIPLRPHARKVESLRQTIQRTAFSFPVEDVIRRLGYRFDANRDLDQPPEPEPDSSHETFGDLAHTDVSSVEAGETRLQSLPVLRSLLHRTRVSSLTSAFNSADRLPDGFLYTDPLIPRSQEQPPPPVEDRDSFSSIAAVINSESQMDTAVEIDSMVSISTSSSRRRNDTLQVSDVDSGNSRAPRRRRLA 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30984066 30985349 + CcPI632755_10g017440.1 Cco10g1744 190702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1744 398 MobiDBLite consensus disorder prediction 367 387 - -
Cco10g1744 398 CDD RING-HC_AtRMA-like 139 182 - -
Cco10g1744 398 FunFam Zinc finger family protein 122 195 - -
Cco10g1744 398 ProSitePatterns Zinc finger RING-type signature. 156 165 IPR017907 -
Cco10g1744 398 ProSiteProfiles Zinc finger RING-type profile. 141 182 IPR001841 -
Cco10g1744 398 MobiDBLite consensus disorder prediction 367 398 - -
Cco10g1744 398 Pfam Zinc finger, C3HC4 type (RING finger) 141 181 IPR018957 GO:0046872(InterPro)
Cco10g1744 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 196 IPR013083 -
Cco10g1744 398 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 108 342 IPR045103 GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)|GO:0071712(PANTHER)
Cco10g1744 398 SMART ring_2 141 181 IPR001841 -
Cco10g1744 398 SUPERFAMILY RING/U-box 137 194 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1453 Cco-Chr5:17319374 Cco10g1744 Cco-Chr10:30984066 2.40E-07 dispersed
Cco08g1720 Cco-Chr8:28515573 Cco10g1744 Cco-Chr10:30984066 1.60E-26 dispersed
Cco10g1744 Cco-Chr10:30984066 Cco11g1863 Cco-Chr11:31316094 5.50E-22 dispersed
Cco10g1255 Cco-Chr10:25310896 Cco10g1744 Cco-Chr10:30984066 4.10E-34 transposed
Cco10g1744 Cco-Chr10:30984066 Cco04g2081 Cco-Chr4:34769210 1.90E-22 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1744 K10666 - csv:101220497 725.702