Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g1745 | ATGGAGTTGGGTTTGAGCCTTGGAGATCATCCTCCTTCCAATTCCAATAAACCATTTGGGTTTCTCTCTAAACCGCTTTCTTCTTCTTCTTCTTCATCTCTCATGGCTTTGGGATTTTGTGTTGGTTTAATTGGACATCATTCTGCTTCTGCTTCCGCTTCCGCTTCCGCTTCCCTTCAAGATGATGAAGAAGAAGATGAAGATGATGATAATGATCAGAAAACGGTTCTTCTCGGTTCAGCTTCCGGTTCGGATCCACCGGTTCAGCTCGATCTTCTTCCTTTGGCTCCTGTTCCTCGTTCTTCTTCTTCCTCCCTTCCTTTTCCATGGCTTTCTCATCACTTGATGGCGGAAGTGGGTAGTTCAGAGGGAGGAGAAAGGGTAGAGTTGGATGTGAACCGGGCGGCGGAGACAGAAGACAGTAGGGTGTCGTGTTTCCAAATGGAATTTGGGGCGAGAAATGGCGGCGGAGGAGGAATTAAAAGGAAGAGATCATGGGAAATGGAAATGGAAATGGAAACAGAAAGAGGAGGTTGTTCAAGAATGAGTGATGATGATCAAGATCATAATGCCTCTGCTGCTGCTCCTAAAAAGCTTCGACTTTCAAAACAACAATCTGCCTTTCTTGAAGAAAGCTTCAAAGAACATACCACCCTCAATCCTAAGCAGAAGCTAGCACTAGCCAAGCAGCTAAACCTCCAACCTAGGCAAGTGGAAGTATGGTTTCAAAACAGAAGAGCAAGGACAAAGTTGAAGCAGACAGAAGTAGATTGTGAATATTTAAGGAGATGTTGTGAGACATTGACAGAAGAGAACAGAAGATTACAAAAAGAACTTCAAGAATTAAGAGCTTTAAAAACTTCTCAGCCCTTTTATATGCAACTTCCAGCCACCACTCTCACCATGTGCCCCTCGTGCGAGCGTGTCGCCGCCACCACCACCACTCCCACCACCTCCGTTCCCACCAAAACCGCCGCCCCCGCCCCGTCGTCCGCTCTTTGCCTCGCCAATAAACCGAAGATCTTGCCATTTCCTCAGTTGCATCAGGCTGCTTCATGA | 1059 | 46.65 | MELGLSLGDHPPSNSNKPFGFLSKPLSSSSSSSLMALGFCVGLIGHHSASASASASASLQDDEEEDEDDDNDQKTVLLGSASGSDPPVQLDLLPLAPVPRSSSSSLPFPWLSHHLMAEVGSSEGGERVELDVNRAAETEDSRVSCFQMEFGARNGGGGGIKRKRSWEMEMEMETERGGCSRMSDDDQDHNASAAAPKKLRLSKQQSAFLEESFKEHTTLNPKQKLALAKQLNLQPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVAATTTTPTTSVPTKTAAPAPSSALCLANKPKILPFPQLHQAAS | 352 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 31007523 | 31009568 | + | CcPI632755_10g017450.1 | Cco10g1745 | 190703 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g1745 | 352 | ProSitePatterns | 'Homeobox' domain signature. | 227 | 250 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Cco10g1745 | 352 | MobiDBLite | consensus disorder prediction | 177 | 199 | - | - | |
Cco10g1745 | 352 | ProSiteProfiles | 'Homeobox' domain profile. | 192 | 252 | IPR001356 | GO:0003677(InterPro) | |
Cco10g1745 | 352 | CDD | homeodomain | 197 | 253 | IPR001356 | GO:0003677(InterPro) | |
Cco10g1745 | 352 | Gene3D | - | 200 | 250 | - | - | |
Cco10g1745 | 352 | Coils | Coil | 258 | 288 | - | - | |
Cco10g1745 | 352 | Pfam | Homeodomain | 198 | 250 | IPR001356 | GO:0003677(InterPro) | |
Cco10g1745 | 352 | MobiDBLite | consensus disorder prediction | 177 | 193 | - | - | |
Cco10g1745 | 352 | MobiDBLite | consensus disorder prediction | 51 | 95 | - | - | |
Cco10g1745 | 352 | MobiDBLite | consensus disorder prediction | 9 | 32 | - | - | |
Cco10g1745 | 352 | Pfam | Homeobox associated leucine zipper | 252 | 286 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco10g1745 | 352 | FunFam | Homeobox-leucine zipper protein HAT22 | 200 | 246 | - | - | |
Cco10g1745 | 352 | SUPERFAMILY | Homeodomain-like | 189 | 253 | IPR009057 | - | |
Cco10g1745 | 352 | SMART | HOX_1 | 194 | 256 | IPR001356 | GO:0003677(InterPro) | |
Cco10g1745 | 352 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Cco10g1745 | 352 | SMART | halz | 252 | 295 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco10g1745 | 352 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 | 66 | 324 | IPR050762 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco10g0249 | Cco-Chr10:2652289 | Cco10g1745 | Cco-Chr10:31007523 | 9.70E-50 | dispersed | |
Cco10g0785 | Cco-Chr10:14746659 | Cco10g1745 | Cco-Chr10:31007523 | 2.80E-49 | dispersed | |
Cco10g1254 | Cco-Chr10:25296138 | Cco10g1745 | Cco-Chr10:31007523 | 6.00E-44 | dispersed | |
Cco10g1745 | Cco-Chr10:31007523 | Cco10g1941 | Cco-Chr10:32971895 | 1.40E-13 | dispersed | |
Cco10g1745 | Cco-Chr10:31007523 | Cco09g0363 | Cco-Chr9:3298066 | 5.00E-67 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60157 | PF00046 | Homeodomain | 2.30E-15 | CL0123 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g1745 | K09338 | - | csv:101222778 | 437.573 |