Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1745 ATGGAGTTGGGTTTGAGCCTTGGAGATCATCCTCCTTCCAATTCCAATAAACCATTTGGGTTTCTCTCTAAACCGCTTTCTTCTTCTTCTTCTTCATCTCTCATGGCTTTGGGATTTTGTGTTGGTTTAATTGGACATCATTCTGCTTCTGCTTCCGCTTCCGCTTCCGCTTCCCTTCAAGATGATGAAGAAGAAGATGAAGATGATGATAATGATCAGAAAACGGTTCTTCTCGGTTCAGCTTCCGGTTCGGATCCACCGGTTCAGCTCGATCTTCTTCCTTTGGCTCCTGTTCCTCGTTCTTCTTCTTCCTCCCTTCCTTTTCCATGGCTTTCTCATCACTTGATGGCGGAAGTGGGTAGTTCAGAGGGAGGAGAAAGGGTAGAGTTGGATGTGAACCGGGCGGCGGAGACAGAAGACAGTAGGGTGTCGTGTTTCCAAATGGAATTTGGGGCGAGAAATGGCGGCGGAGGAGGAATTAAAAGGAAGAGATCATGGGAAATGGAAATGGAAATGGAAACAGAAAGAGGAGGTTGTTCAAGAATGAGTGATGATGATCAAGATCATAATGCCTCTGCTGCTGCTCCTAAAAAGCTTCGACTTTCAAAACAACAATCTGCCTTTCTTGAAGAAAGCTTCAAAGAACATACCACCCTCAATCCTAAGCAGAAGCTAGCACTAGCCAAGCAGCTAAACCTCCAACCTAGGCAAGTGGAAGTATGGTTTCAAAACAGAAGAGCAAGGACAAAGTTGAAGCAGACAGAAGTAGATTGTGAATATTTAAGGAGATGTTGTGAGACATTGACAGAAGAGAACAGAAGATTACAAAAAGAACTTCAAGAATTAAGAGCTTTAAAAACTTCTCAGCCCTTTTATATGCAACTTCCAGCCACCACTCTCACCATGTGCCCCTCGTGCGAGCGTGTCGCCGCCACCACCACCACTCCCACCACCTCCGTTCCCACCAAAACCGCCGCCCCCGCCCCGTCGTCCGCTCTTTGCCTCGCCAATAAACCGAAGATCTTGCCATTTCCTCAGTTGCATCAGGCTGCTTCATGA 1059 46.65 MELGLSLGDHPPSNSNKPFGFLSKPLSSSSSSSLMALGFCVGLIGHHSASASASASASLQDDEEEDEDDDNDQKTVLLGSASGSDPPVQLDLLPLAPVPRSSSSSLPFPWLSHHLMAEVGSSEGGERVELDVNRAAETEDSRVSCFQMEFGARNGGGGGIKRKRSWEMEMEMETERGGCSRMSDDDQDHNASAAAPKKLRLSKQQSAFLEESFKEHTTLNPKQKLALAKQLNLQPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVAATTTTPTTSVPTKTAAPAPSSALCLANKPKILPFPQLHQAAS 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 31007523 31009568 + CcPI632755_10g017450.1 Cco10g1745 190703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1745 352 ProSitePatterns 'Homeobox' domain signature. 227 250 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cco10g1745 352 MobiDBLite consensus disorder prediction 177 199 - -
Cco10g1745 352 ProSiteProfiles 'Homeobox' domain profile. 192 252 IPR001356 GO:0003677(InterPro)
Cco10g1745 352 CDD homeodomain 197 253 IPR001356 GO:0003677(InterPro)
Cco10g1745 352 Gene3D - 200 250 - -
Cco10g1745 352 Coils Coil 258 288 - -
Cco10g1745 352 Pfam Homeodomain 198 250 IPR001356 GO:0003677(InterPro)
Cco10g1745 352 MobiDBLite consensus disorder prediction 177 193 - -
Cco10g1745 352 MobiDBLite consensus disorder prediction 51 95 - -
Cco10g1745 352 MobiDBLite consensus disorder prediction 9 32 - -
Cco10g1745 352 Pfam Homeobox associated leucine zipper 252 286 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g1745 352 FunFam Homeobox-leucine zipper protein HAT22 200 246 - -
Cco10g1745 352 SUPERFAMILY Homeodomain-like 189 253 IPR009057 -
Cco10g1745 352 SMART HOX_1 194 256 IPR001356 GO:0003677(InterPro)
Cco10g1745 352 MobiDBLite consensus disorder prediction 1 32 - -
Cco10g1745 352 SMART halz 252 295 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g1745 352 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 66 324 IPR050762 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0249 Cco-Chr10:2652289 Cco10g1745 Cco-Chr10:31007523 9.70E-50 dispersed
Cco10g0785 Cco-Chr10:14746659 Cco10g1745 Cco-Chr10:31007523 2.80E-49 dispersed
Cco10g1254 Cco-Chr10:25296138 Cco10g1745 Cco-Chr10:31007523 6.00E-44 dispersed
Cco10g1745 Cco-Chr10:31007523 Cco10g1941 Cco-Chr10:32971895 1.40E-13 dispersed
Cco10g1745 Cco-Chr10:31007523 Cco09g0363 Cco-Chr9:3298066 5.00E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60157 PF00046 Homeodomain 2.30E-15 CL0123 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1745 K09338 - csv:101222778 437.573