Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco10g1805 | ATGAACACCTCCACTGACTCTGATGGCGGAGACGGCGGCAGCGTCGGAAGTTTCCCCTACGTCGTCGGAATTTCAGTCGGAATCCTCTTCCTCCTCACAACCCTTACAATCGCGACATATTTCTGCACCAGAACCACCGTTCCGTCGCCGAATCGCCGTCTCCGGCCGGCGGAACAGCGGGATTTCGTCGTCGAGTTTGGACCGGGGCTTGAAGATGAGGTCATTAATGGGTATCCGAAGATTCTGTACTCGGAGGTGAAATTGGAGGGAAAATTGGAGTCCGCCGCCGCGAGGGGTTGTTCGATATGTTTGGGGGATTATAAAAACGACGACGTTTTGCGGTTGTTGCCGGATTGTGGCCATTTGTTTCACAGCGGTTGTATTGATCCGTGGTTGCGGATGAACCCTAGCTGCCCTGTTTGCAGAACTTCGCCGGTGCCGACGCCGATTTCAACCCCTTTGGCGGAGACGGTTCCGTTGGCCATCGGAAGGAGTTGA | 498 | 55.02 | MNTSTDSDGGDGGSVGSFPYVVGISVGILFLLTTLTIATYFCTRTTVPSPNRRLRPAEQRDFVVEFGPGLEDEVINGYPKILYSEVKLEGKLESAAARGCSICLGDYKNDDVLRLLPDCGHLFHSGCIDPWLRMNPSCPVCRTSPVPTPISTPLAETVPLAIGRS | 165 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 31646214 | 31646711 | - | CcPI632755_10g018050.1 | Cco10g1805 | 190763 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco10g1805 | 165 | SMART | ring_2 | 100 | 141 | IPR001841 | - | |
| Cco10g1805 | 165 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 12 | 159 | IPR045899 | - | |
| Cco10g1805 | 165 | Pfam | Ring finger domain | 100 | 142 | IPR001841 | - | |
| Cco10g1805 | 165 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 62 | 147 | IPR013083 | - | |
| Cco10g1805 | 165 | CDD | RING-H2_PA-TM-RING | 100 | 142 | - | - | |
| Cco10g1805 | 165 | ProSiteProfiles | Zinc finger RING-type profile. | 100 | 142 | IPR001841 | - | |
| Cco10g1805 | 165 | SUPERFAMILY | RING/U-box | 74 | 147 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco08g1224 | Cco-Chr8:23960290 | Cco10g1805 | Cco-Chr10:31646214 | 2.40E-25 | dispersed | |
| Cco10g1640 | Cco-Chr10:29802448 | Cco10g1805 | Cco-Chr10:31646214 | 3.90E-07 | dispersed | |
| Cco08g0954 | Cco-Chr8:21416596 | Cco10g1805 | Cco-Chr10:31646214 | 4.70E-15 | transposed | |
| Cco11g0691 | Cco-Chr11:7524732 | Cco10g1805 | Cco-Chr10:31646214 | 7.00E-08 | transposed | |
| Cco10g1805 | Cco-Chr10:31646214 | Cco04g1262 | Cco-Chr4:27970270 | 3.90E-46 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco10g1805 | - | - | - | 0.0 |