Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1805 ATGAACACCTCCACTGACTCTGATGGCGGAGACGGCGGCAGCGTCGGAAGTTTCCCCTACGTCGTCGGAATTTCAGTCGGAATCCTCTTCCTCCTCACAACCCTTACAATCGCGACATATTTCTGCACCAGAACCACCGTTCCGTCGCCGAATCGCCGTCTCCGGCCGGCGGAACAGCGGGATTTCGTCGTCGAGTTTGGACCGGGGCTTGAAGATGAGGTCATTAATGGGTATCCGAAGATTCTGTACTCGGAGGTGAAATTGGAGGGAAAATTGGAGTCCGCCGCCGCGAGGGGTTGTTCGATATGTTTGGGGGATTATAAAAACGACGACGTTTTGCGGTTGTTGCCGGATTGTGGCCATTTGTTTCACAGCGGTTGTATTGATCCGTGGTTGCGGATGAACCCTAGCTGCCCTGTTTGCAGAACTTCGCCGGTGCCGACGCCGATTTCAACCCCTTTGGCGGAGACGGTTCCGTTGGCCATCGGAAGGAGTTGA 498 55.02 MNTSTDSDGGDGGSVGSFPYVVGISVGILFLLTTLTIATYFCTRTTVPSPNRRLRPAEQRDFVVEFGPGLEDEVINGYPKILYSEVKLEGKLESAAARGCSICLGDYKNDDVLRLLPDCGHLFHSGCIDPWLRMNPSCPVCRTSPVPTPISTPLAETVPLAIGRS 165
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 31646214 31646711 - CcPI632755_10g018050.1 Cco10g1805 190763
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1805 165 SMART ring_2 100 141 IPR001841 -
Cco10g1805 165 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 12 159 IPR045899 -
Cco10g1805 165 Pfam Ring finger domain 100 142 IPR001841 -
Cco10g1805 165 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 147 IPR013083 -
Cco10g1805 165 CDD RING-H2_PA-TM-RING 100 142 - -
Cco10g1805 165 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Cco10g1805 165 SUPERFAMILY RING/U-box 74 147 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1224 Cco-Chr8:23960290 Cco10g1805 Cco-Chr10:31646214 2.40E-25 dispersed
Cco10g1640 Cco-Chr10:29802448 Cco10g1805 Cco-Chr10:31646214 3.90E-07 dispersed
Cco08g0954 Cco-Chr8:21416596 Cco10g1805 Cco-Chr10:31646214 4.70E-15 transposed
Cco11g0691 Cco-Chr11:7524732 Cco10g1805 Cco-Chr10:31646214 7.00E-08 transposed
Cco10g1805 Cco-Chr10:31646214 Cco04g1262 Cco-Chr4:27970270 3.90E-46 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1805 - - - 0.0