Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1812 ATGAACGATTTATTCTCCTCTCGATCCTTTTCCCGCGACACCCATGTCGTTGAAATGGGCAACGCTTCCTCTTCCCCTACTGCTGTTAATCTCGACAAGTTCTTTGAAGATGTTGAATCTGTTAAAGACGAGCTCAAGGAGCTTGAGCGACTCTACACTAACCTCCGTGACTCCCATGAACAGAGCAAGACCCTTCACAATGCTAAGGCCGTCAAGGACCTCCGATCTCGCATGGATTCTGATGTTTCTCTTGCTCTCAAGAAGGCCAAGCTCATTAAAGTCCGATTGGAGGCTCTTGATCGCTCCAATGCTGCCAACCGGAGTCTCCCTGGTTGCGGTCCCGGTTCCTCTTCTGACCGGACTCGGACTTCTGTAGTCAACGGTTTGAGGAAGAAATTGCAGGACTCTATGGAGAGTTTCAATAATCTCAGGCAACAGATCTCCTCTGAGTACCGGGAGACCGTTCAGCGAAGATATTACACGGTTACTGGGGAAAATCCAGACGAGAAGACCATTGATGTACTGATATCTACAGGTGAAAGTGAGACATTTTTGCAGAAAGCCATTCAAGAACAAGGTAGAGGCAGAATTTTAGACACCATTAGTGAGATCCAGGAGAGGCATGATGCTGTGAAAGACCTGGAAAGGAACCTCAAAGAGCTGCACCAGGTTTTCTTGGACATGGCAGTCTTGGTGCACGAGCAAGGCGAGAAACTTGACGACATCGAAAGCCAAGTGAACAGGGCTCATTCTTTTGTTCGAGGCGGCACGCAGGAGTTGACAACAGCTAGAGTATACCAGAAAAACACCCGGAAATGGACAATTATTGCCATCATCATTGTGCTGCTCATTGTCATGTTCGACGAGTCGTCTCCTACCGAAAAACTCTCGACCGAGCCCTCACACCATACCGCTAGATGGGAGGTTCCATCTCCGGGCTCCGACCGATCGGAAATATCTTCCATCCTTGAGATCACTCTTCTGCTTCGCCGGGATCGGAATCCGGCGGGAGAGCACTGGCGACCGGCTAATCCATTGCAGATTCGAGGTCATCTCTCTAACCAATTCGAACCAATTTCAAGCAAGTTCAAATCAAAGCGCATCTTTCGAGCTCTTCTCTCGCTTTCCTCCACCATGGGAACACTGCGAATGATAGATATTGCAGTCAATTTTACAGATGGTATGTTCAAAGGAATTTACCACGGGAAGCAATACCACGCAGCTGACATAGCAGCTGTATTGAGCAGGGCTTGGAGTGCTGGGGTTCAGCGAATCATTGTGACCGGTGGATCACTCGAGGAATCAAGGGAAGCCCTTAAAATTGCAGAAACAGATGGAAGGCTCTTTTGTACTGTGGGTGTGCATCCAACTAGATGCAAGGAATTTGAAGAGAGTGGTGATCCAGAGACGTATTTTCAGGCTCTTCTTTCATTAACCAAAGAGGGAATTGAGAAAGGAAAGGTTGTTGCAGTTGGTGAATGTGGACTAGATTATGACAGGCTTCACTTTTGCCCTGCCGATATTCAAAAGAAATATTTTGAGAAGCAGTTTGAATTAGCACACACAACAAAGCTTCCTATGTTTCTACACATGAGGGCAGCTGCTGAAGATTTTTGTGACATTGTAGAGCGAAATAAGCAAAGGTTTTGTGCTGGAGTTGTTCATTCTTTCACAGATAGTGCAGAAGATCGTGACAAGCTTCTCTCATTCAGTAATTTGTACATAGGGATTAATGGTTGCTCTCTGAAAACTACTGAAAATCTCGATGTTGTGAGGGGTATACCAATCGAGAGACTGATGATTGAGACAGACTCTCCATATTGTGAAATCAAGAATACACATGCTGGGATTAAGTTTGTTAAATCGACCTGGGCTTCTAAGAAGAAAGAGAAGCATGATGAGCAGTGCATAGTGAAAGGAAGGAATGAACCATGTTTAGTTCGGCAAGTTCTTGAGGTCTTGGCTGGATGTAAAGGCATCATGGATATCGATCAGCTTAGTGAAACTTTGTACCACAATACGTGCAGAGTTTTCTTTCCTCAAGACCTGGACTCTGCAGCAGATGCTCTCCTTGCTGGTTCTCATGATCTTGATGAAAAAATTTAG 2106 45.77 MNDLFSSRSFSRDTHVVEMGNASSSPTAVNLDKFFEDVESVKDELKELERLYTNLRDSHEQSKTLHNAKAVKDLRSRMDSDVSLALKKAKLIKVRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLQDSMESFNNLRQQISSEYRETVQRRYYTVTGENPDEKTIDVLISTGESETFLQKAIQEQGRGRILDTISEIQERHDAVKDLERNLKELHQVFLDMAVLVHEQGEKLDDIESQVNRAHSFVRGGTQELTTARVYQKNTRKWTIIAIIIVLLIVMFDESSPTEKLSTEPSHHTARWEVPSPGSDRSEISSILEITLLLRRDRNPAGEHWRPANPLQIRGHLSNQFEPISSKFKSKRIFRALLSLSSTMGTLRMIDIAVNFTDGMFKGIYHGKQYHAADIAAVLSRAWSAGVQRIIVTGGSLEESREALKIAETDGRLFCTVGVHPTRCKEFEESGDPETYFQALLSLTKEGIEKGKVVAVGECGLDYDRLHFCPADIQKKYFEKQFELAHTTKLPMFLHMRAAAEDFCDIVERNKQRFCAGVVHSFTDSAEDRDKLLSFSNLYIGINGCSLKTTENLDVVRGIPIERLMIETDSPYCEIKNTHAGIKFVKSTWASKKKEKHDEQCIVKGRNEPCLVRQVLEVLAGCKGIMDIDQLSETLYHNTCRVFFPQDLDSAADALLAGSHDLDEKI 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 31699964 31707162 - CcPI632755_10g018120.1 Cco10g1812 190770

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1812 701 FunFam Putative tatD related deoxyribonuclease 379 685 - -
Cco10g1812 701 MobiDBLite consensus disorder prediction 294 316 - -
Cco10g1812 701 PANTHER TATD FAMILY DEOXYRIBONUCLEASE 372 689 IPR050891 GO:0005829(PANTHER)|GO:0008296(PANTHER)
Cco10g1812 701 SMART SynN_4 26 152 IPR006011 GO:0016020(InterPro)
Cco10g1812 701 ProSitePatterns Syntaxin / epimorphin family signature. 207 246 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cco10g1812 701 CDD TatD_DNAse 384 679 IPR001130 GO:0016788(InterPro)
Cco10g1812 701 Pfam SNARE domain 238 287 IPR000727 -
Cco10g1812 701 SUPERFAMILY Metallo-dependent hydrolases 384 679 IPR032466 -
Cco10g1812 701 SMART tSNARE_6 196 263 IPR000727 -
Cco10g1812 701 Pfam Syntaxin 33 236 IPR006011 GO:0016020(InterPro)
Cco10g1812 701 CDD SynN 31 188 IPR006011 GO:0016020(InterPro)
Cco10g1812 701 Coils Coil 204 224 - -
Cco10g1812 701 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 201 263 IPR000727 -
Cco10g1812 701 FunFam Syntaxin 132 194 287 - -
Cco10g1812 701 Coils Coil 31 65 - -
Cco10g1812 701 ProSitePatterns TatD deoxyribonuclease family signature 3. 590 606 IPR018228 -
Cco10g1812 701 Gene3D - 198 287 - -
Cco10g1812 701 Pfam TatD related DNase 405 678 IPR001130 GO:0016788(InterPro)
Cco10g1812 701 Gene3D - 29 161 - -
Cco10g1812 701 Gene3D - 373 685 - -
Cco10g1812 701 ProSitePatterns TatD deoxyribonuclease family signature 2. 526 536 IPR018228 -
Cco10g1812 701 SUPERFAMILY t-snare proteins 30 256 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cco10g1812 701 CDD SNARE_syntaxin1-like 200 262 - -
Cco10g1812 701 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 28 158 - -
Cco10g1812 701 Coils Coil 126 150 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1812 K03424 - - csv:101209174 640.188
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0763 Cco-Chr4:22778141 Cco10g1812 Cco-Chr10:31699964 1.30E-58 dispersed
Cco10g1337 Cco-Chr10:26334438 Cco10g1812 Cco-Chr10:31699964 4.50E-64 dispersed
Cco03g0560 Cco-Chr3:5724362 Cco10g1812 Cco-Chr10:31699964 4.20E-91 transposed
Cco04g1722 Cco-Chr4:32322285 Cco10g1812 Cco-Chr10:31699964 5.30E-44 transposed
Cco10g1812 Cco-Chr10:31699964 Cco04g1261 Cco-Chr4:27965463 2.00E-112 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco08g1446 . 8 365 SNARE and Associated Proteins AT3G24350 55.6 3.6e-89 325.5
Cco04g0763 . 1 309 SNARE and Associated Proteins AT1G08560 69.6 1.4e-100 363.2
Cco04g1722 . 1 242 SNARE and Associated Proteins AT2G18260 55.7 3.8e-71 265.4
Cco10g1812 . 19 279 SNARE and Associated Proteins AT3G11820 80.8 3.4e-115 411.8
Cco04g1261 . 26 282 SNARE and Associated Proteins AT3G11820 73.2 1.3e-103 373.2
Cco03g0560 . 31 281 SNARE and Associated Proteins AT3G11820 66.5 1.1e-92 337.0
Cco10g1337 . 30 284 SNARE and Associated Proteins AT3G11820 52.9 3.6e-69 258.8
Cco10g1812 . 1 279 SNARE and Associated Proteins AT3G52400 63.9 5.7e-92 334.7
Cco04g1261 . 33 282 SNARE and Associated Proteins AT3G52400 64.8 2.3e-85 312.8
Cco03g0560 . 1 281 SNARE and Associated Proteins AT3G52400 56.4 3.4e-81 298.9
Cco03g0560 . 1 299 SNARE and Associated Proteins AT4G03330 69.2 3.0e-108 388.7
Cco10g1812 . 1 284 SNARE and Associated Proteins AT4G03330 57.2 3.0e-84 308.9
Cco04g1261 . 1 297 SNARE and Associated Proteins AT4G03330 52.3 8.4e-79 290.8
Cco10g1337 . 1 284 SNARE and Associated Proteins AT4G03330 52.4 1.2e-69 260.4
Cco03g0560 . 1 299 SNARE and Associated Proteins AT1G61290 79.3 9.7e-128 453.4
Cco10g1812 . 1 284 SNARE and Associated Proteins AT1G61290 62.0 2.5e-91 332.4
Cco04g1261 . 1 297 SNARE and Associated Proteins AT1G61290 56.9 9.2e-86 313.9
Cco03g0560 . 1 299 SNARE and Associated Proteins AT1G11250 78.3 1.7e-124 442.6
Cco10g1812 . 1 284 SNARE and Associated Proteins AT1G11250 62.0 1.5e-93 339.7
Cco04g1261 . 1 291 SNARE and Associated Proteins AT1G11250 57.4 6.3e-87 317.8
Cco10g1337 . 1 303 SNARE and Associated Proteins AT3G03800 74.3 9.5e-115 410.2
Cco10g1337 . 1 202 SNARE and Associated Proteins AT5G08080 79.3 2.9e-81 298.5
Cco02g0923 . 1 225 SNARE and Associated Proteins AT5G08080 52.4 2.8e-47 185.7
Cco10g0147 . 1 256 SNARE and Associated Proteins AT5G16830 59.5 7.9e-76 280.8
Cco10g0147 . 1 256 SNARE and Associated Proteins AT5G46860 66.0 3.9e-80 295.0
Cco10g0147 . 1 256 SNARE and Associated Proteins AT4G17730 60.9 2.7e-73 272.3
Cco10g0147 . 65 256 SNARE and Associated Proteins AT1G32270 59.9 4.4e-52 202.2
Cco07g0418 . 51 386 SNARE and Associated Proteins AT5G05760 65.9 3.1e-111 398.7
Cco08g1446 . 8 365 SNARE and Associated Proteins AT3G24350 55.6 3.6e-89 325.5
Cco02g1642 . 1 327 SNARE and Associated Proteins AT5G26980 76.1 3.0e-127 451.8
Cco09g0532 . 1 318 SNARE and Associated Proteins AT5G26980 66.2 1.3e-101 366.7
Cco09g0532 . 1 318 SNARE and Associated Proteins AT4G02195 67.1 1.1e-105 380.2
Cco02g1642 . 1 329 SNARE and Associated Proteins AT4G02195 64.0 7.2e-105 377.5
Cco02g1642 . 1 328 SNARE and Associated Proteins AT3G05710 75.7 2.5e-129 458.8
Cco09g0532 . 1 318 SNARE and Associated Proteins AT3G05710 63.7 5.1e-98 354.8
Cco09g1113 . 1 233 SNARE and Associated Proteins AT1G16240 72.1 2.3e-89 325.5
Cco10g0456 . 32 253 SNARE and Associated Proteins AT1G16240 68.5 2.0e-80 295.8
Cco09g1113 . 1 233 SNARE and Associated Proteins AT1G79590 71.2 1.1e-87 320.1
Cco10g0456 . 27 253 SNARE and Associated Proteins AT1G79590 67.0 9.2e-82 300.4
Cco06g0051 . 232 422 SNARE and Associated Proteins AT1G28490 71.7 8.3e-67 250.4
Cco10g2031 . 1 264 SNARE and Associated Proteins AT3G09740 78.9 3.8e-112 401.4
Cco02g2256 . 1 265 SNARE and Associated Proteins AT3G09740 67.4 4.3e-95 344.7
Cco02g2256 . 1 265 SNARE and Associated Proteins AT3G45280 65.2 1.4e-90 329.7
Cco10g2031 . 1 264 SNARE and Associated Proteins AT3G45280 63.7 1.3e-86 316.6
Cco10g2031 . 1 261 SNARE and Associated Proteins AT3G61450 68.2 6.1e-94 340.9
Cco02g2256 . 1 262 SNARE and Associated Proteins AT3G61450 61.4 1.8e-85 312.8
Cco11g0653 . 65 309 SNARE and Associated Proteins AT1G51740 72.9 1.7e-90 329.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010905 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 31