Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1812 ATGAACGATTTATTCTCCTCTCGATCCTTTTCCCGCGACACCCATGTCGTTGAAATGGGCAACGCTTCCTCTTCCCCTACTGCTGTTAATCTCGACAAGTTCTTTGAAGATGTTGAATCTGTTAAAGACGAGCTCAAGGAGCTTGAGCGACTCTACACTAACCTCCGTGACTCCCATGAACAGAGCAAGACCCTTCACAATGCTAAGGCCGTCAAGGACCTCCGATCTCGCATGGATTCTGATGTTTCTCTTGCTCTCAAGAAGGCCAAGCTCATTAAAGTCCGATTGGAGGCTCTTGATCGCTCCAATGCTGCCAACCGGAGTCTCCCTGGTTGCGGTCCCGGTTCCTCTTCTGACCGGACTCGGACTTCTGTAGTCAACGGTTTGAGGAAGAAATTGCAGGACTCTATGGAGAGTTTCAATAATCTCAGGCAACAGATCTCCTCTGAGTACCGGGAGACCGTTCAGCGAAGATATTACACGGTTACTGGGGAAAATCCAGACGAGAAGACCATTGATGTACTGATATCTACAGGTGAAAGTGAGACATTTTTGCAGAAAGCCATTCAAGAACAAGGTAGAGGCAGAATTTTAGACACCATTAGTGAGATCCAGGAGAGGCATGATGCTGTGAAAGACCTGGAAAGGAACCTCAAAGAGCTGCACCAGGTTTTCTTGGACATGGCAGTCTTGGTGCACGAGCAAGGCGAGAAACTTGACGACATCGAAAGCCAAGTGAACAGGGCTCATTCTTTTGTTCGAGGCGGCACGCAGGAGTTGACAACAGCTAGAGTATACCAGAAAAACACCCGGAAATGGACAATTATTGCCATCATCATTGTGCTGCTCATTGTCATGTTCGACGAGTCGTCTCCTACCGAAAAACTCTCGACCGAGCCCTCACACCATACCGCTAGATGGGAGGTTCCATCTCCGGGCTCCGACCGATCGGAAATATCTTCCATCCTTGAGATCACTCTTCTGCTTCGCCGGGATCGGAATCCGGCGGGAGAGCACTGGCGACCGGCTAATCCATTGCAGATTCGAGGTCATCTCTCTAACCAATTCGAACCAATTTCAAGCAAGTTCAAATCAAAGCGCATCTTTCGAGCTCTTCTCTCGCTTTCCTCCACCATGGGAACACTGCGAATGATAGATATTGCAGTCAATTTTACAGATGGTATGTTCAAAGGAATTTACCACGGGAAGCAATACCACGCAGCTGACATAGCAGCTGTATTGAGCAGGGCTTGGAGTGCTGGGGTTCAGCGAATCATTGTGACCGGTGGATCACTCGAGGAATCAAGGGAAGCCCTTAAAATTGCAGAAACAGATGGAAGGCTCTTTTGTACTGTGGGTGTGCATCCAACTAGATGCAAGGAATTTGAAGAGAGTGGTGATCCAGAGACGTATTTTCAGGCTCTTCTTTCATTAACCAAAGAGGGAATTGAGAAAGGAAAGGTTGTTGCAGTTGGTGAATGTGGACTAGATTATGACAGGCTTCACTTTTGCCCTGCCGATATTCAAAAGAAATATTTTGAGAAGCAGTTTGAATTAGCACACACAACAAAGCTTCCTATGTTTCTACACATGAGGGCAGCTGCTGAAGATTTTTGTGACATTGTAGAGCGAAATAAGCAAAGGTTTTGTGCTGGAGTTGTTCATTCTTTCACAGATAGTGCAGAAGATCGTGACAAGCTTCTCTCATTCAGTAATTTGTACATAGGGATTAATGGTTGCTCTCTGAAAACTACTGAAAATCTCGATGTTGTGAGGGGTATACCAATCGAGAGACTGATGATTGAGACAGACTCTCCATATTGTGAAATCAAGAATACACATGCTGGGATTAAGTTTGTTAAATCGACCTGGGCTTCTAAGAAGAAAGAGAAGCATGATGAGCAGTGCATAGTGAAAGGAAGGAATGAACCATGTTTAGTTCGGCAAGTTCTTGAGGTCTTGGCTGGATGTAAAGGCATCATGGATATCGATCAGCTTAGTGAAACTTTGTACCACAATACGTGCAGAGTTTTCTTTCCTCAAGACCTGGACTCTGCAGCAGATGCTCTCCTTGCTGGTTCTCATGATCTTGATGAAAAAATTTAG 2106 45.77 MNDLFSSRSFSRDTHVVEMGNASSSPTAVNLDKFFEDVESVKDELKELERLYTNLRDSHEQSKTLHNAKAVKDLRSRMDSDVSLALKKAKLIKVRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLQDSMESFNNLRQQISSEYRETVQRRYYTVTGENPDEKTIDVLISTGESETFLQKAIQEQGRGRILDTISEIQERHDAVKDLERNLKELHQVFLDMAVLVHEQGEKLDDIESQVNRAHSFVRGGTQELTTARVYQKNTRKWTIIAIIIVLLIVMFDESSPTEKLSTEPSHHTARWEVPSPGSDRSEISSILEITLLLRRDRNPAGEHWRPANPLQIRGHLSNQFEPISSKFKSKRIFRALLSLSSTMGTLRMIDIAVNFTDGMFKGIYHGKQYHAADIAAVLSRAWSAGVQRIIVTGGSLEESREALKIAETDGRLFCTVGVHPTRCKEFEESGDPETYFQALLSLTKEGIEKGKVVAVGECGLDYDRLHFCPADIQKKYFEKQFELAHTTKLPMFLHMRAAAEDFCDIVERNKQRFCAGVVHSFTDSAEDRDKLLSFSNLYIGINGCSLKTTENLDVVRGIPIERLMIETDSPYCEIKNTHAGIKFVKSTWASKKKEKHDEQCIVKGRNEPCLVRQVLEVLAGCKGIMDIDQLSETLYHNTCRVFFPQDLDSAADALLAGSHDLDEKI 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 31699964 31707162 - CcPI632755_10g018120.1 Cco10g1812 190770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1812 701 FunFam Putative tatD related deoxyribonuclease 379 685 - -
Cco10g1812 701 MobiDBLite consensus disorder prediction 294 316 - -
Cco10g1812 701 PANTHER TATD FAMILY DEOXYRIBONUCLEASE 372 689 IPR050891 GO:0005829(PANTHER)|GO:0008296(PANTHER)
Cco10g1812 701 SMART SynN_4 26 152 IPR006011 GO:0016020(InterPro)
Cco10g1812 701 ProSitePatterns Syntaxin / epimorphin family signature. 207 246 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cco10g1812 701 CDD TatD_DNAse 384 679 IPR001130 GO:0016788(InterPro)
Cco10g1812 701 Pfam SNARE domain 238 287 IPR000727 -
Cco10g1812 701 SUPERFAMILY Metallo-dependent hydrolases 384 679 IPR032466 -
Cco10g1812 701 SMART tSNARE_6 196 263 IPR000727 -
Cco10g1812 701 Pfam Syntaxin 33 236 IPR006011 GO:0016020(InterPro)
Cco10g1812 701 CDD SynN 31 188 IPR006011 GO:0016020(InterPro)
Cco10g1812 701 Coils Coil 204 224 - -
Cco10g1812 701 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 201 263 IPR000727 -
Cco10g1812 701 FunFam Syntaxin 132 194 287 - -
Cco10g1812 701 Coils Coil 31 65 - -
Cco10g1812 701 ProSitePatterns TatD deoxyribonuclease family signature 3. 590 606 IPR018228 -
Cco10g1812 701 Gene3D - 198 287 - -
Cco10g1812 701 Pfam TatD related DNase 405 678 IPR001130 GO:0016788(InterPro)
Cco10g1812 701 Gene3D - 29 161 - -
Cco10g1812 701 Gene3D - 373 685 - -
Cco10g1812 701 ProSitePatterns TatD deoxyribonuclease family signature 2. 526 536 IPR018228 -
Cco10g1812 701 SUPERFAMILY t-snare proteins 30 256 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cco10g1812 701 CDD SNARE_syntaxin1-like 200 262 - -
Cco10g1812 701 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 28 158 - -
Cco10g1812 701 Coils Coil 126 150 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0763 Cco-Chr4:22778141 Cco10g1812 Cco-Chr10:31699964 1.30E-58 dispersed
Cco10g1337 Cco-Chr10:26334438 Cco10g1812 Cco-Chr10:31699964 4.50E-64 dispersed
Cco03g0560 Cco-Chr3:5724362 Cco10g1812 Cco-Chr10:31699964 4.20E-91 transposed
Cco04g1722 Cco-Chr4:32322285 Cco10g1812 Cco-Chr10:31699964 5.30E-44 transposed
Cco10g1812 Cco-Chr10:31699964 Cco04g1261 Cco-Chr4:27965463 2.00E-112 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1812 K03424 - csv:101209174 640.188