Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1817 ATGGAAGATGAAATCGAAATCCCCCATTATTTCCTCTGCCCCATCTCCCTCCAAATCATGAAAGACCCTGTAACTCTCCCCTCCGGCATAACCTACGACCGCCACTCCATTGAAACTTGGCTCTTCTCCAACAAAAACTCCTCCTGCCCCGTCACCAAACTCCCCATCTCCGACTCCGATTCCGACCTTCTCACCCCTAACCACACCCTCCGCCGTCTAATCCAAGCTTGGTGTACTTTAAACTCCTCCCATGGCGTCGAACGCTTCCCCACTCCCAAACCCCCCATCCATAAATCCCAAATCCTTCACCTCATTTCCTCTGCCAATACTTCCCCTTCTTCCTTAATCTCCTCCATCCGCCGTCTCCGCTCCATATCCGCCGACTCTGAAACTAATCGACGTTGTGTTGAATCCGCCGGAGCGCCAGAGTTTTTAGCCTCTGTTATTGTCGGCACCGACTCCTCTGCCTCTCATGAAGCTGTCTCTACTCTCCATTATCTCCGTCTCTCCGATTCAACATTCAAATCCTTGGCTACCCATTCCGAGTTTCTCGATTCTTTGACGAATTTCATGAAATTACAAGGTACCCATGAATCGTCGAGAGCTTATGCGGTGTTGATTTTGAAATCGATCTTCGAAGTCGCTGACCCACTTCAACTAAGTTTCTTGAAATCCGATTTGTTTGTGCGGATTGTTGAGATTTTGAAGGATCGATCATCGTCTCAGCAGATTCTCAAGGCGGCATTGGGGATTTTGATTGCGGCGTGTCCATGGGGGAGGAACAGAGTGAAGGCAGTGGAGTCAGGTGGGGTTGGGGTTTTGGTTGAGATTTTACTAGCGACGCCGGAAAGGAGGGTATGTGAGATGACGTTGACGGCGATGGATTTACTCTGTGGGTGTGCGGATGGCAGGGCGGCGCTGCTGGCACACGGCGGAGGTATGGCCATTGTTTCGAAGAAGATACTGAGAGTGTCGCAAGTGGGGAGTGAAAAGGCGGTGAGGGTTCTGTATTGGGTGGCGAAATTCTCGGGAAGTCCGGCGGTTTTGATGGAAATGGCGCAATTAGGGATTCTGGCGAAGCTTTGTTTGGTTCTGCAAATTGAAAGTGGAAGCAAGACGAAGGAGAAAGCTAGAGAGATTTTGAAAATGCATGCTCGTGTTTGGAAGAATTCGCCGTGTATTCCTTCTAAATTGGCTTCTTCATATCCTCCAAATTAA 1218 49.51 MEDEIEIPHYFLCPISLQIMKDPVTLPSGITYDRHSIETWLFSNKNSSCPVTKLPISDSDSDLLTPNHTLRRLIQAWCTLNSSHGVERFPTPKPPIHKSQILHLISSANTSPSSLISSIRRLRSISADSETNRRCVESAGAPEFLASVIVGTDSSASHEAVSTLHYLRLSDSTFKSLATHSEFLDSLTNFMKLQGTHESSRAYAVLILKSIFEVADPLQLSFLKSDLFVRIVEILKDRSSSQQILKAALGILIAACPWGRNRVKAVESGGVGVLVEILLATPERRVCEMTLTAMDLLCGCADGRAALLAHGGGMAIVSKKILRVSQVGSEKAVRVLYWVAKFSGSPAVLMEMAQLGILAKLCLVLQIESGSKTKEKAREILKMHARVWKNSPCIPSKLASSYPPN 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 31793055 31794272 - CcPI632755_10g018170.1 Cco10g1817 190775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1817 405 SUPERFAMILY ARM repeat 101 371 IPR016024 -
Cco10g1817 405 SMART Ubox_2 10 77 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco10g1817 405 Pfam U-box domain 7 81 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco10g1817 405 Gene3D - 96 390 IPR011989 -
Cco10g1817 405 PANTHER WDSAM1 PROTEIN 3 400 IPR045185 GO:0061630(InterPro)
Cco10g1817 405 SUPERFAMILY RING/U-box 4 85 - -
Cco10g1817 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
Cco10g1817 405 ProSiteProfiles U-box domain profile. 6 84 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco10g1817 405 FunFam RING-type E3 ubiquitin transferase 1 87 - -
Cco10g1817 405 CDD RING-Ubox_PUB 8 60 IPR045210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1244 Cco-Chr3:24640649 Cco10g1817 Cco-Chr10:31793055 3.50E-72 dispersed
Cco03g1248 Cco-Chr3:24872369 Cco10g1817 Cco-Chr10:31793055 6.50E-79 dispersed
Cco05g0313 Cco-Chr5:2485574 Cco10g1817 Cco-Chr10:31793055 1.40E-52 dispersed
Cco06g0070 Cco-Chr6:648202 Cco10g1817 Cco-Chr10:31793055 1.30E-35 dispersed
Cco08g1086 Cco-Chr8:22635480 Cco10g1817 Cco-Chr10:31793055 9.50E-13 dispersed
Cco10g1817 Cco-Chr10:31793055 Cco11g1436 Cco-Chr11:27123540 5.80E-11 dispersed
Cco04g0773 Cco-Chr4:22890329 Cco10g1817 Cco-Chr10:31793055 1.50E-113 transposed
Cco05g1175 Cco-Chr5:10898338 Cco10g1817 Cco-Chr10:31793055 1.10E-49 transposed
Cco05g1300 Cco-Chr5:13178125 Cco10g1817 Cco-Chr10:31793055 2.00E-43 transposed
Cco07g0210 Cco-Chr7:2135878 Cco10g1817 Cco-Chr10:31793055 3.00E-06 transposed
Cco07g0588 Cco-Chr7:7959886 Cco10g1817 Cco-Chr10:31793055 3.60E-46 transposed
Cco10g1817 Cco-Chr10:31793055 Cco02g2401 Cco-Chr2:36367435 9.00E-97 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1817 - - - 0.0