Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g1817 | ATGGAAGATGAAATCGAAATCCCCCATTATTTCCTCTGCCCCATCTCCCTCCAAATCATGAAAGACCCTGTAACTCTCCCCTCCGGCATAACCTACGACCGCCACTCCATTGAAACTTGGCTCTTCTCCAACAAAAACTCCTCCTGCCCCGTCACCAAACTCCCCATCTCCGACTCCGATTCCGACCTTCTCACCCCTAACCACACCCTCCGCCGTCTAATCCAAGCTTGGTGTACTTTAAACTCCTCCCATGGCGTCGAACGCTTCCCCACTCCCAAACCCCCCATCCATAAATCCCAAATCCTTCACCTCATTTCCTCTGCCAATACTTCCCCTTCTTCCTTAATCTCCTCCATCCGCCGTCTCCGCTCCATATCCGCCGACTCTGAAACTAATCGACGTTGTGTTGAATCCGCCGGAGCGCCAGAGTTTTTAGCCTCTGTTATTGTCGGCACCGACTCCTCTGCCTCTCATGAAGCTGTCTCTACTCTCCATTATCTCCGTCTCTCCGATTCAACATTCAAATCCTTGGCTACCCATTCCGAGTTTCTCGATTCTTTGACGAATTTCATGAAATTACAAGGTACCCATGAATCGTCGAGAGCTTATGCGGTGTTGATTTTGAAATCGATCTTCGAAGTCGCTGACCCACTTCAACTAAGTTTCTTGAAATCCGATTTGTTTGTGCGGATTGTTGAGATTTTGAAGGATCGATCATCGTCTCAGCAGATTCTCAAGGCGGCATTGGGGATTTTGATTGCGGCGTGTCCATGGGGGAGGAACAGAGTGAAGGCAGTGGAGTCAGGTGGGGTTGGGGTTTTGGTTGAGATTTTACTAGCGACGCCGGAAAGGAGGGTATGTGAGATGACGTTGACGGCGATGGATTTACTCTGTGGGTGTGCGGATGGCAGGGCGGCGCTGCTGGCACACGGCGGAGGTATGGCCATTGTTTCGAAGAAGATACTGAGAGTGTCGCAAGTGGGGAGTGAAAAGGCGGTGAGGGTTCTGTATTGGGTGGCGAAATTCTCGGGAAGTCCGGCGGTTTTGATGGAAATGGCGCAATTAGGGATTCTGGCGAAGCTTTGTTTGGTTCTGCAAATTGAAAGTGGAAGCAAGACGAAGGAGAAAGCTAGAGAGATTTTGAAAATGCATGCTCGTGTTTGGAAGAATTCGCCGTGTATTCCTTCTAAATTGGCTTCTTCATATCCTCCAAATTAA | 1218 | 49.51 | MEDEIEIPHYFLCPISLQIMKDPVTLPSGITYDRHSIETWLFSNKNSSCPVTKLPISDSDSDLLTPNHTLRRLIQAWCTLNSSHGVERFPTPKPPIHKSQILHLISSANTSPSSLISSIRRLRSISADSETNRRCVESAGAPEFLASVIVGTDSSASHEAVSTLHYLRLSDSTFKSLATHSEFLDSLTNFMKLQGTHESSRAYAVLILKSIFEVADPLQLSFLKSDLFVRIVEILKDRSSSQQILKAALGILIAACPWGRNRVKAVESGGVGVLVEILLATPERRVCEMTLTAMDLLCGCADGRAALLAHGGGMAIVSKKILRVSQVGSEKAVRVLYWVAKFSGSPAVLMEMAQLGILAKLCLVLQIESGSKTKEKAREILKMHARVWKNSPCIPSKLASSYPPN | 405 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 31793055 | 31794272 | - | CcPI632755_10g018170.1 | Cco10g1817 | 190775 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g1817 | 405 | SUPERFAMILY | ARM repeat | 101 | 371 | IPR016024 | - | |
Cco10g1817 | 405 | SMART | Ubox_2 | 10 | 77 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cco10g1817 | 405 | Pfam | U-box domain | 7 | 81 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cco10g1817 | 405 | Gene3D | - | 96 | 390 | IPR011989 | - | |
Cco10g1817 | 405 | PANTHER | WDSAM1 PROTEIN | 3 | 400 | IPR045185 | GO:0061630(InterPro) | |
Cco10g1817 | 405 | SUPERFAMILY | RING/U-box | 4 | 85 | - | - | |
Cco10g1817 | 405 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 88 | IPR013083 | - | |
Cco10g1817 | 405 | ProSiteProfiles | U-box domain profile. | 6 | 84 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cco10g1817 | 405 | FunFam | RING-type E3 ubiquitin transferase | 1 | 87 | - | - | |
Cco10g1817 | 405 | CDD | RING-Ubox_PUB | 8 | 60 | IPR045210 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco03g1244 | Cco-Chr3:24640649 | Cco10g1817 | Cco-Chr10:31793055 | 3.50E-72 | dispersed | |
Cco03g1248 | Cco-Chr3:24872369 | Cco10g1817 | Cco-Chr10:31793055 | 6.50E-79 | dispersed | |
Cco05g0313 | Cco-Chr5:2485574 | Cco10g1817 | Cco-Chr10:31793055 | 1.40E-52 | dispersed | |
Cco06g0070 | Cco-Chr6:648202 | Cco10g1817 | Cco-Chr10:31793055 | 1.30E-35 | dispersed | |
Cco08g1086 | Cco-Chr8:22635480 | Cco10g1817 | Cco-Chr10:31793055 | 9.50E-13 | dispersed | |
Cco10g1817 | Cco-Chr10:31793055 | Cco11g1436 | Cco-Chr11:27123540 | 5.80E-11 | dispersed | |
Cco04g0773 | Cco-Chr4:22890329 | Cco10g1817 | Cco-Chr10:31793055 | 1.50E-113 | transposed | |
Cco05g1175 | Cco-Chr5:10898338 | Cco10g1817 | Cco-Chr10:31793055 | 1.10E-49 | transposed | |
Cco05g1300 | Cco-Chr5:13178125 | Cco10g1817 | Cco-Chr10:31793055 | 2.00E-43 | transposed | |
Cco07g0210 | Cco-Chr7:2135878 | Cco10g1817 | Cco-Chr10:31793055 | 3.00E-06 | transposed | |
Cco07g0588 | Cco-Chr7:7959886 | Cco10g1817 | Cco-Chr10:31793055 | 3.60E-46 | transposed | |
Cco10g1817 | Cco-Chr10:31793055 | Cco02g2401 | Cco-Chr2:36367435 | 9.00E-97 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g1817 | - | - | - | 0.0 |