Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1818 ATGGCGACTTACCTTCATGGAAGTTCTGATCAATTCCAATCTTCTGATGGTGGCCTTCAAACCCTTGTCTTAATGAATCCAAGCTATGTTCAATTCTCCGACACGCCGCCGCCGCCGCCTCCGTCCCACCCTAATCTCGTCTTCTTCAATTCTCCTTCTACGGCTGCTAATTCCTATACTACACTAACACAAGCGCCCCCGTCTTCTCACACTCAACAATTCGTTGGAATTCCGTTGCAGACGACTGCCGCTTCCCCGACGTCACAAGACCATAATTCGCATCCTTTGAATCCCCACCATGATATCTCTGCCTTGCACGGCTTTGCTCCACGCCTTCACCATAACATTTGGAACCAAATTGACCCATCCACGGCCGCGCGTGAGTCTGCACGTGCTCAGCAGGGCTTGTCCTTGAGCCTTTCTTCGCAGCACCAGCAAGGTTTTGGGTCGAGAGATGTTCAATCTCAGACCCAACAGGCGGCGTCTGGCGAGGAGAACATGCGGATCTCCGGTGGATCGAGTTCTTCGGCTTCTGGTGTCAGTAACGGCGTTGCTGGAATTCAGGGCGTTTTAATTAGCTCCAAATATCTTAAGGCTGCGCAAGAACTTCTAGATGAGGTTGTTAATGTCACCCAAATCGGAATTAAAAGTGAATCATCTCCAAAGAAGGCCACTGGAAATCAATCGAAGATGATCGGAGATGCTCCCGCTGCCACCGGAACTGCAGACGGTTCTTTAGAAGGAGAAACCGACGGTAAACGGGCCGCGGAGCTTACAACCGCCGAGAGACAAGAAATTCAGATGAAGAAAGCAAAGCTTATAAGCATGCTTGACGAGGTGGAGCAAAGGTACAGACAGTACCACCACCAGATGCAGATAGTGATATCCTCATTCGAGCAGGCGGCCGGAGCCGGTTCGGCGAGAACCTACACAGCCCTTGCACTTCAGACGATTTCGAAGCAATTCCGTTGCTTAAAAGACGCAATCACCGGCCAAATCCGAGCGGCGAACAAGAGTTTGGGTGAAGAAGAATGTATCGGAAGAAAAATGGAAGGTTCCCGGTTGAAATTCGTCGATAACCATCTCCGGCAACAACGAGCTCTGCAACAATTGGGCATGATCCAACACAATGCTTGGAGACCTCAGAGAGGCTTACCGGAGAGATCGGTATCGATTCTTCGGGCTTGGCTTTTCGAACACTTCCTCCATCCTTACCCTAAGGATTCAGATAAACACATGCTCGCTAAGCAAACAGGGCTCACCAGAAGCCAGGTTTCGAATTGGTTTATAAACGCGAGAGTTCGACTGTGGAAGCCAATGGTGGAAGAGATGTACATGGAGGAAATCAAAGAGCAAGAACAGAACGGCAGCGGATCGACACCGGCGACGGAAAAAAGCAACGACGATTCAGTTTCGAAATCCATAGCTCCACCACCAGAGACAAAAAGCCCCAATTCAAAACAAGAGGAAAAAAGCCCAAATCCAAACCAAAACGTGCATCCTTCAATCTCAATCTCAAATTCCTCCGGCGGAAATGTTCGAAACCCATCTGGATTTACACTCATCGGAGCCTCATCGGAGCTCGACGGAATCACACAAGGAAGCCCTAAAAAACAGAGAGGCCCAGAAATCCTTCATTCCTCAAACAACAACGTCCCTTTCATAAACATGGACATCAAACCCCGAGAAGAAGAAGAACATCAAAATCACAATCACAATCACAATCCCCATCATAATCATCATCTTCCAATGAAATTCGACGACGAGAGACAAAACAGAGATGGGTATTCATTTCTAGGCCAACCCCATTTCAACATCGGCGGATTCGGCCAATACCCAATCGGCGAAATCGCCAGATTCGACGCCGATCAGTTTACTCCAAGATTCTCCGGCAACAATGGTGTCTCTTTGACTTTAGGCCTTCCCCATTGTGAAAATCTCTCGTTAAACGCAGCTACCCACCAAAGCTTTCTCCCAAACCAGAGCATCCATTTAGGAAGAAGAACAGAAATTGGAAAACCCACTGATTTTTCCGCCATTAACGCCTCTACAGCTCATTCTTCCACTGCTTTTGAGACCATCAACATCCAAAATGGAAAAAGGTTCGCTGCTCAATTACTGCCAGACTTTGTGGCCTAA 2139 48.29 MATYLHGSSDQFQSSDGGLQTLVLMNPSYVQFSDTPPPPPPSHPNLVFFNSPSTAANSYTTLTQAPPSSHTQQFVGIPLQTTAASPTSQDHNSHPLNPHHDISALHGFAPRLHHNIWNQIDPSTAARESARAQQGLSLSLSSQHQQGFGSRDVQSQTQQAASGEENMRISGGSSSSASGVSNGVAGIQGVLISSKYLKAAQELLDEVVNVTQIGIKSESSPKKATGNQSKMIGDAPAATGTADGSLEGETDGKRAAELTTAERQEIQMKKAKLISMLDEVEQRYRQYHHQMQIVISSFEQAAGAGSARTYTALALQTISKQFRCLKDAITGQIRAANKSLGEEECIGRKMEGSRLKFVDNHLRQQRALQQLGMIQHNAWRPQRGLPERSVSILRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEIKEQEQNGSGSTPATEKSNDDSVSKSIAPPPETKSPNSKQEEKSPNPNQNVHPSISISNSSGGNVRNPSGFTLIGASSELDGITQGSPKKQRGPEILHSSNNNVPFINMDIKPREEEEHQNHNHNHNPHHNHHLPMKFDDERQNRDGYSFLGQPHFNIGGFGQYPIGEIARFDADQFTPRFSGNNGVSLTLGLPHCENLSLNAATHQSFLPNQSIHLGRRTEIGKPTDFSAINASTAHSSTAFETINIQNGKRFAAQLLPDFVA 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 31809157 31811582 - CcPI632755_10g018180.1 Cco10g1818 190776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1818 712 Coils Coil 263 283 - -
Cco10g1818 712 MobiDBLite consensus disorder prediction 217 251 - -
Cco10g1818 712 SUPERFAMILY Homeodomain-like 380 446 IPR009057 -
Cco10g1818 712 Pfam Homeobox KN domain 396 435 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco10g1818 712 MobiDBLite consensus disorder prediction 450 553 - -
Cco10g1818 712 ProSiteProfiles 'Homeobox' domain profile. 376 439 IPR001356 GO:0003677(InterPro)
Cco10g1818 712 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 131 480 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cco10g1818 712 SMART prehox3 185 331 IPR006563 -
Cco10g1818 712 FunFam BEL1-like homeodomain protein 9 382 444 - -
Cco10g1818 712 CDD homeodomain 379 440 IPR001356 GO:0003677(InterPro)
Cco10g1818 712 Pfam Associated with HOX 191 330 IPR006563 -
Cco10g1818 712 MobiDBLite consensus disorder prediction 452 533 - -
Cco10g1818 712 SMART HOX_1 379 443 IPR001356 GO:0003677(InterPro)
Cco10g1818 712 MobiDBLite consensus disorder prediction 82 102 - -
Cco10g1818 712 MobiDBLite consensus disorder prediction 124 180 - -
Cco10g1818 712 Gene3D - 374 453 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g1818 Cco-Chr10:31809157 Cco10g2138 Cco-Chr10:34601680 2.50E-49 dispersed
Cco01g0252 Cco-Chr1:2370519 Cco10g1818 Cco-Chr10:31809157 6.40E-67 transposed
Cco04g1384 Cco-Chr4:29223308 Cco10g1818 Cco-Chr10:31809157 3.10E-68 transposed
Cco08g1876 Cco-Chr8:29783625 Cco10g1818 Cco-Chr10:31809157 2.10E-43 transposed
Cco09g0266 Cco-Chr9:2388096 Cco10g1818 Cco-Chr10:31809157 5.70E-72 transposed
Cco11g0420 Cco-Chr11:4344386 Cco10g1818 Cco-Chr10:31809157 5.60E-83 transposed
Cco10g1818 Cco-Chr10:31809157 Cco02g2400 Cco-Chr2:36351654 4.60E-144 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60164 PF07526 POX 9.00E-50 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1818 - - - 0.0