Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1857 ATGTCCATAAACCACTTCTCTCCTGGCTTCCATCGACCACTCTTCTCTACTCCCCAACTCCCCATCATGCTTAACCCCAAATCCTCCCTCTCCGTCGCCGCCGCCGCCGACCTCCTCCCCATGTTCGAAAAACCCTTAACCCCCAGCGACGTTGGCAAGCTCAACCGTCTCGTCATCCCCAAGCAATACGCCGAAAAATACTTCCCCCTCTCCCCCTCCGCCGCGGTTGCGGCCGCCGGCGACTCTGCCGACAAGGGGTTACTCCTCAGCTTCGAAGATGAGTCCGGCAAGATATGGCGGTTCCGTTACTCTTATTGGAATAGTAGTCAGAGCTATGTGCTGACGAAGGGGTGGAGCCGGTTTGTGAAAGAGAAGCGCCTTGACGCCGGTGATATCGTCGTTTTTGAACGCCACCGCCGTGATGGTGATAGGTTGTTCATTGGGTGGAAGAGGAGGTCGGCGCCGTCTCCGGCGGACACTGCCGTGGCTACCGCGAGTGGCGGTGTTGGCGGCGGTGGAGGTTGGACTAGAATGTTCTGTTCTACAAACCCATATCCTTCTTCTCATCATCATCATCATCATCATCATCTTCCTTCACCGCCATACCAATCTTCTTCTGATTCTCCTCATGCAGAGTCCTCTGTTCAGAGTCAAACAGTGTCGGTTGGGAATTCAAAGATACTGCGGTTGTTCGGAGTGGACTTGGAGTGCCAAACCGACATGTCGGAACCCGAACCACCGTCGACACTCAGTGTCGGGTCAAGCTTAAGTTTATCGGGTCGAGATCCAACCCGCCAAAGCTTCTACACACATTATTCTTCTCCTCTTCCTCATCACATGGATTTCACTTTCTCACAAGATATCAAGCAGACGAAATATCAAGGATAG 888 53.27 MSINHFSPGFHRPLFSTPQLPIMLNPKSSLSVAAAADLLPMFEKPLTPSDVGKLNRLVIPKQYAEKYFPLSPSAAVAAAGDSADKGLLLSFEDESGKIWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDIVVFERHRRDGDRLFIGWKRRSAPSPADTAVATASGGVGGGGGWTRMFCSTNPYPSSHHHHHHHHLPSPPYQSSSDSPHAESSVQSQTVSVGNSKILRLFGVDLECQTDMSEPEPPSTLSVGSSLSLSGRDPTRQSFYTHYSSPLPHHMDFTFSQDIKQTKYQG 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32196066 32199271 + CcPI632755_10g018570.1 Cco10g1857 190815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1857 295 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 38 235 IPR044800 GO:0003700(InterPro)
Cco10g1857 295 MobiDBLite consensus disorder prediction 187 220 - -
Cco10g1857 295 SUPERFAMILY DNA-binding pseudobarrel domain 40 153 IPR015300 -
Cco10g1857 295 ProSiteProfiles B3 DNA-binding domain profile. 42 153 IPR003340 GO:0003677(InterPro)
Cco10g1857 295 SMART B3_2 42 153 IPR003340 GO:0003677(InterPro)
Cco10g1857 295 MobiDBLite consensus disorder prediction 242 267 - -
Cco10g1857 295 MobiDBLite consensus disorder prediction 239 267 - -
Cco10g1857 295 MobiDBLite consensus disorder prediction 199 220 - -
Cco10g1857 295 CDD B3_DNA 40 142 IPR003340 GO:0003677(InterPro)
Cco10g1857 295 Pfam B3 DNA binding domain 42 152 IPR003340 GO:0003677(InterPro)
Cco10g1857 295 Gene3D - 33 161 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0128 Cco-Chr1:1127062 Cco10g1857 Cco-Chr10:32196066 8.10E-39 dispersed
Cco06g1417 Cco-Chr6:24673747 Cco10g1857 Cco-Chr10:32196066 4.90E-25 dispersed
Cco10g1857 Cco-Chr10:32196066 Cco07g0865 Cco-Chr7:20059607 8.20E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60167 PF02362 B3 1.10E-30 CL0405 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1857 K09287 - csv:101214938 469.929