Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g1857 | ATGTCCATAAACCACTTCTCTCCTGGCTTCCATCGACCACTCTTCTCTACTCCCCAACTCCCCATCATGCTTAACCCCAAATCCTCCCTCTCCGTCGCCGCCGCCGCCGACCTCCTCCCCATGTTCGAAAAACCCTTAACCCCCAGCGACGTTGGCAAGCTCAACCGTCTCGTCATCCCCAAGCAATACGCCGAAAAATACTTCCCCCTCTCCCCCTCCGCCGCGGTTGCGGCCGCCGGCGACTCTGCCGACAAGGGGTTACTCCTCAGCTTCGAAGATGAGTCCGGCAAGATATGGCGGTTCCGTTACTCTTATTGGAATAGTAGTCAGAGCTATGTGCTGACGAAGGGGTGGAGCCGGTTTGTGAAAGAGAAGCGCCTTGACGCCGGTGATATCGTCGTTTTTGAACGCCACCGCCGTGATGGTGATAGGTTGTTCATTGGGTGGAAGAGGAGGTCGGCGCCGTCTCCGGCGGACACTGCCGTGGCTACCGCGAGTGGCGGTGTTGGCGGCGGTGGAGGTTGGACTAGAATGTTCTGTTCTACAAACCCATATCCTTCTTCTCATCATCATCATCATCATCATCATCTTCCTTCACCGCCATACCAATCTTCTTCTGATTCTCCTCATGCAGAGTCCTCTGTTCAGAGTCAAACAGTGTCGGTTGGGAATTCAAAGATACTGCGGTTGTTCGGAGTGGACTTGGAGTGCCAAACCGACATGTCGGAACCCGAACCACCGTCGACACTCAGTGTCGGGTCAAGCTTAAGTTTATCGGGTCGAGATCCAACCCGCCAAAGCTTCTACACACATTATTCTTCTCCTCTTCCTCATCACATGGATTTCACTTTCTCACAAGATATCAAGCAGACGAAATATCAAGGATAG | 888 | 53.27 | MSINHFSPGFHRPLFSTPQLPIMLNPKSSLSVAAAADLLPMFEKPLTPSDVGKLNRLVIPKQYAEKYFPLSPSAAVAAAGDSADKGLLLSFEDESGKIWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDIVVFERHRRDGDRLFIGWKRRSAPSPADTAVATASGGVGGGGGWTRMFCSTNPYPSSHHHHHHHHLPSPPYQSSSDSPHAESSVQSQTVSVGNSKILRLFGVDLECQTDMSEPEPPSTLSVGSSLSLSGRDPTRQSFYTHYSSPLPHHMDFTFSQDIKQTKYQG | 295 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 32196066 | 32199271 | + | CcPI632755_10g018570.1 | Cco10g1857 | 190815 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g1857 | 295 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 38 | 235 | IPR044800 | GO:0003700(InterPro) | |
Cco10g1857 | 295 | MobiDBLite | consensus disorder prediction | 187 | 220 | - | - | |
Cco10g1857 | 295 | SUPERFAMILY | DNA-binding pseudobarrel domain | 40 | 153 | IPR015300 | - | |
Cco10g1857 | 295 | ProSiteProfiles | B3 DNA-binding domain profile. | 42 | 153 | IPR003340 | GO:0003677(InterPro) | |
Cco10g1857 | 295 | SMART | B3_2 | 42 | 153 | IPR003340 | GO:0003677(InterPro) | |
Cco10g1857 | 295 | MobiDBLite | consensus disorder prediction | 242 | 267 | - | - | |
Cco10g1857 | 295 | MobiDBLite | consensus disorder prediction | 239 | 267 | - | - | |
Cco10g1857 | 295 | MobiDBLite | consensus disorder prediction | 199 | 220 | - | - | |
Cco10g1857 | 295 | CDD | B3_DNA | 40 | 142 | IPR003340 | GO:0003677(InterPro) | |
Cco10g1857 | 295 | Pfam | B3 DNA binding domain | 42 | 152 | IPR003340 | GO:0003677(InterPro) | |
Cco10g1857 | 295 | Gene3D | - | 33 | 161 | IPR015300 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g0128 | Cco-Chr1:1127062 | Cco10g1857 | Cco-Chr10:32196066 | 8.10E-39 | dispersed | |
Cco06g1417 | Cco-Chr6:24673747 | Cco10g1857 | Cco-Chr10:32196066 | 4.90E-25 | dispersed | |
Cco10g1857 | Cco-Chr10:32196066 | Cco07g0865 | Cco-Chr7:20059607 | 8.20E-39 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60167 | PF02362 | B3 | 1.10E-30 | CL0405 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g1857 | K09287 | - | csv:101214938 | 469.929 |