Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1866 ATGTGGGCAAGCGCCGAAGGAGGGCCGCCGGAGGTAACTCTGGAGACTTCCATGGGTTCTTTCACCGTCGAGCTTTACTTCAAACACGCACCGAGAACATGTAGAAACTTCATTGAGCTTTCCCGGCGAGGTTATTATGACAATGTCAAATTCCACCGGATTATTAAGGATTTTATAGTGCAAGGTGGAGATCCCACAGGAACTGGACGGGGTGGGGAATCTATTTATGGCAAGAAGTTTGAGGATGAAATAAAACCAGAGTTGAAGCACACTGGAGCAGGTATTCTATCAATGGCAAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATCACTCTTGCTCCTTGCCCATCCTTAGATGGAAAGCACTCTATCTTTGGAAGAGTTTGTAGGGGAATGGAAATAATCAAAAGGCTTGGCAGTGTACAAACTGATAACAATGATAGACCCATCCATGATGTGAAAATACTACGGGCATCAGTTAAAGACTAA 495 44.24 MWASAEGGPPEVTLETSMGSFTVELYFKHAPRTCRNFIELSRRGYYDNVKFHRIIKDFIVQGGDPTGTGRGGESIYGKKFEDEIKPELKHTGAGILSMANAGPDTNGSQFFITLAPCPSLDGKHSIFGRVCRGMEIIKRLGSVQTDNNDRPIHDVKILRASVKD 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32255126 32258846 + CcPI632755_10g018660.1 Cco10g1866 190824

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1866 164 FunFam Peptidyl-prolyl cis-trans isomerase 2 164 - -
Cco10g1866 164 SUPERFAMILY Cyclophilin-like 11 162 IPR029000 -
Cco10g1866 164 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 46 63 IPR020892 GO:0003755(InterPro)|GO:0006457(InterPro)
Cco10g1866 164 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 9 159 IPR044666 GO:0000413(PANTHER)|GO:0003755(PANTHER)|GO:0071013(PANTHER)
Cco10g1866 164 PIRSF Peptidylpro_ismrse 3 164 IPR024936 GO:0003755(InterPro)
Cco10g1866 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 25 40 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco10g1866 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 109 121 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco10g1866 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 51 63 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco10g1866 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 137 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco10g1866 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 94 109 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco10g1866 164 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 12 162 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco10g1866 164 Gene3D - 3 164 IPR029000 -
Cco10g1866 164 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 15 162 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1866 K12733 - - csv:101222111 335.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1378 Cco-Chr1:24532479 Cco10g1866 Cco-Chr10:32255126 8.00E-44 dispersed
Cco05g0251 Cco-Chr5:1981795 Cco10g1866 Cco-Chr10:32255126 1.30E-41 dispersed
Cco05g2043 Cco-Chr5:29498297 Cco10g1866 Cco-Chr10:32255126 1.20E-38 dispersed
Cco09g0713 Cco-Chr9:6493163 Cco10g1866 Cco-Chr10:32255126 5.10E-29 dispersed
Cco09g1961 Cco-Chr9:33632575 Cco10g1866 Cco-Chr10:32255126 1.30E-30 dispersed
Cco10g1866 Cco-Chr10:32255126 Cco04g1512 Cco-Chr4:30551298 4.00E-43 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g950 . . . . Bpe04g01516 . Bma04g01568 . Cmo06g00493 . . . . . . . Cpe08g00998 . . . . . . . . . . . . . . Cone3ag0170 . . . . . . Cme04g02374 . Blo09g00488 Bda03g01656 . . . . . Sed02g0502 . . Cma06g00492 Cma14g00328 Car06g00431 Car14g00298 Cpe03g00282 . Bhi11g02339 Tan08g1697 Cmetu05g0569 Lac10g2836 Hepe05g0401 . . Cla10g01783 Cam10g1838 Cec10g1892 Cco10g1866 Clacu10g1853 Cmu10g2603 Cre10g1992 Lsi03g01872 Csa03g03444 Chy04g01907 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco10g1534 . 1 1041 U-box Gene Family AT5G15400 76.1 0.0e+00 1579.3
Cco02g1344 . 296 940 U-box Gene Family AT2G23140 66.2 1.4e-123 440.7
Cco08g1897 . 1 780 U-box Gene Family AT1G24330 59.8 1.3e-245 846.3
Cco11g1436 . 1 755 U-box Gene Family AT1G24330 58.2 1.0e-229 793.5
Cco08g1897 . 1 779 U-box Gene Family AT1G67530 59.8 2.8e-243 838.6
Cco11g1436 . 1 756 U-box Gene Family AT1G67530 57.3 2.3e-226 782.3
Cco04g2025 . 1 362 U-box Gene Family AT4G21350 61.8 7.0e-120 427.6
Cco07g0211 . 135 455 U-box Gene Family AT3G07360 54.6 5.2e-79 291.6
Cco07g0680 . 265 452 U-box Gene Family AT1G71020 70.9 8.3e-73 271.6
Cco01g0639 . 1067 1266 U-box Gene Family AT1G71020 55.4 1.5e-53 207.6
Cco03g0164 . 276 445 U-box Gene Family AT1G71020 57.8 9.2e-48 188.3
Cco05g2381 . 249 414 U-box Gene Family AT1G71020 58.0 4.6e-47 186.0
Cco02g2163 . 255 425 U-box Gene Family AT1G71020 57.6 1.7e-46 184.1
Cco07g0680 . 16 656 U-box Gene Family AT1G23030 56.6 2.8e-110 396.4
Cco01g0639 . 853 1456 U-box Gene Family AT1G23030 51.9 3.3e-82 303.1
Cco03g0164 . 111 650 U-box Gene Family AT2G28830 59.7 2.3e-101 366.7
Cco02g2163 . 93 635 U-box Gene Family AT2G28830 50.6 8.2e-99 358.2
Cco03g0164 . 19 688 U-box Gene Family AT3G46510 67.8 1.9e-168 589.7
Cco02g2163 . 3 638 U-box Gene Family AT3G46510 66.4 2.0e-157 553.1
Cco05g2381 . 16 623 U-box Gene Family AT3G46510 58.8 3.9e-121 432.6
Cco05g2381 . 12 625 U-box Gene Family AT3G54850 68.5 6.7e-163 571.2
Cco02g2163 . 13 628 U-box Gene Family AT3G54850 57.1 5.7e-114 408.7
Cco02g1080 . 92 644 U-box Gene Family AT5G42340 64.0 9.5e-128 454.5
Cco04g0823 . 9 669 U-box Gene Family AT5G01830 57.4 1.5e-197 686.4
Cco03g0707 . 1 714 U-box Gene Family AT1G29340 67.9 7.2e-246 847.0
Cco05g1300 . 27 405 U-box Gene Family AT5G37490 51.8 7.2e-100 361.3
Cco04g0773 . 4 422 U-box Gene Family AT3G52450 51.9 6.9e-119 424.5
Cco10g1817 . 1 403 U-box Gene Family AT3G52450 50.5 2.3e-114 409.5
Cco10g1817 . 1 403 U-box Gene Family AT2G35930 55.1 1.0e-119 427.2
Cco04g0773 . 4 422 U-box Gene Family AT2G35930 50.8 1.2e-115 413.7
Cco05g1175 . 9 424 U-box Gene Family AT3G19380 64.4 2.0e-147 519.2
Cco05g1175 . 1 424 U-box Gene Family AT1G49780 64.6 6.0e-152 534.3
Cco04g1311 . 1 407 U-box Gene Family AT5G64660 53.7 2.1e-120 429.5
Cco04g1311 . 1 407 U-box Gene Family AT5G09800 50.6 5.4e-105 378.3
Cco08g1844 . 1 454 U-box Gene Family AT3G49810 63.2 1.8e-154 542.7
Cco05g2930 . 1 454 U-box Gene Family AT3G49810 62.8 5.8e-153 537.7
Cco08g1844 . 1 454 U-box Gene Family AT5G65920 64.3 3.0e-154 542.0
Cco05g2930 . 1 454 U-box Gene Family AT5G65920 61.5 8.0e-147 517.3
Cco05g0188 . 1 872 U-box Gene Family AT2G45910 52.9 3.0e-235 812.0
Cco01g0483 . 68 847 U-box Gene Family AT4G25160 50.4 1.9e-213 739.6
Cco09g2079 . 1 551 U-box Gene Family AT5G40140 53.9 3.3e-94 342.8
Cco01g1435 . 29 498 U-box Gene Family AT5G40140 51.9 4.0e-55 213.0
Cco08g1083 . 1 516 U-box Gene Family AT1G76390 64.3 3.3e-175 612.5
Cco08g1086 . 26 312 U-box Gene Family AT1G76390 55.6 2.1e-84 310.8
Cco08g1083 . 1 516 U-box Gene Family AT1G20780 63.8 3.2e-178 622.5
Cco08g1086 . 35 312 U-box Gene Family AT1G20780 57.7 3.3e-90 330.1
Cco08g1897 . 1 782 U-box Gene Family AT1G27910 62.8 6.4e-269 923.7
Cco11g1436 . 1 767 U-box Gene Family AT1G27910 62.3 1.5e-262 902.5
Cco04g1512 . 1 592 U-box Gene Family AT5G67530 74.2 2.9e-261 897.9
Cco05g0251 . 657 814 U-box Gene Family AT5G67530 52.5 3.1e-45 180.3
Cco10g1866 . 12 162 U-box Gene Family AT5G67530 50.3 9.4e-42 168.7
Cco04g1594 . 48 845 U-box Gene Family AT5G65500 50.1 5.9e-209 724.5
Cco05g0459 . 1 517 U-box Gene Family AT1G04510 74.4 4.0e-222 767.7
Cco05g0459 . 1 486 U-box Gene Family AT2G33340 73.6 3.6e-209 724.5
Cco07g0210 . 10 278 U-box Gene Family AT3G07370 66.9 2.9e-102 368.6
Cco10g1534 . 1 1041 U-box Gene Family AT5G15400 76.1 0.0e+00 1579.3
Cco02g1344 . 296 940 U-box Gene Family AT2G23140 66.2 1.4e-123 440.7
Cco08g1897 . 1 780 U-box Gene Family AT1G24330 59.8 1.3e-245 846.3
Cco11g1436 . 1 755 U-box Gene Family AT1G24330 58.2 1.0e-229 793.5
Cco08g1897 . 1 779 U-box Gene Family AT1G67530 59.8 2.8e-243 838.6
Cco11g1436 . 1 756 U-box Gene Family AT1G67530 57.3 2.3e-226 782.3
Cco04g2025 . 1 362 U-box Gene Family AT4G21350 61.8 7.0e-120 427.6
Cco07g0211 . 135 455 U-box Gene Family AT3G07360 54.6 5.2e-79 291.6
Cco07g0680 . 265 452 U-box Gene Family AT1G71020 70.9 8.3e-73 271.6
Cco01g0639 . 1067 1266 U-box Gene Family AT1G71020 55.4 1.5e-53 207.6
Cco03g0164 . 276 445 U-box Gene Family AT1G71020 57.8 9.2e-48 188.3
Cco05g2381 . 249 414 U-box Gene Family AT1G71020 58.0 4.6e-47 186.0
Cco02g2163 . 255 425 U-box Gene Family AT1G71020 57.6 1.7e-46 184.1
Cco07g0680 . 16 656 U-box Gene Family AT1G23030 56.6 2.8e-110 396.4
Cco01g0639 . 853 1456 U-box Gene Family AT1G23030 51.9 3.3e-82 303.1
Cco03g0164 . 111 650 U-box Gene Family AT2G28830 59.7 2.3e-101 366.7
Cco02g2163 . 93 635 U-box Gene Family AT2G28830 50.6 8.2e-99 358.2
Cco03g0164 . 19 688 U-box Gene Family AT3G46510 67.8 1.9e-168 589.7
Cco02g2163 . 3 638 U-box Gene Family AT3G46510 66.4 2.0e-157 553.1
Cco05g2381 . 16 623 U-box Gene Family AT3G46510 58.8 3.9e-121 432.6
Cco05g2381 . 12 625 U-box Gene Family AT3G54850 68.5 6.7e-163 571.2
Cco02g2163 . 13 628 U-box Gene Family AT3G54850 57.1 5.7e-114 408.7
Cco02g1080 . 92 644 U-box Gene Family AT5G42340 64.0 9.5e-128 454.5
Cco04g0823 . 9 669 U-box Gene Family AT5G01830 57.4 1.5e-197 686.4
Cco03g0707 . 1 714 U-box Gene Family AT1G29340 67.9 7.2e-246 847.0
Cco05g1300 . 27 405 U-box Gene Family AT5G37490 51.8 7.2e-100 361.3
Cco04g0773 . 4 422 U-box Gene Family AT3G52450 51.9 6.9e-119 424.5
Cco10g1817 . 1 403 U-box Gene Family AT3G52450 50.5 2.3e-114 409.5
Cco10g1817 . 1 403 U-box Gene Family AT2G35930 55.1 1.0e-119 427.2
Cco04g0773 . 4 422 U-box Gene Family AT2G35930 50.8 1.2e-115 413.7
Cco05g1175 . 9 424 U-box Gene Family AT3G19380 64.4 2.0e-147 519.2
Cco05g1175 . 1 424 U-box Gene Family AT1G49780 64.6 6.0e-152 534.3
Cco04g1311 . 1 407 U-box Gene Family AT5G64660 53.7 2.1e-120 429.5
Cco04g1311 . 1 407 U-box Gene Family AT5G09800 50.6 5.4e-105 378.3
Cco08g1844 . 1 454 U-box Gene Family AT3G49810 63.2 1.8e-154 542.7
Cco05g2930 . 1 454 U-box Gene Family AT3G49810 62.8 5.8e-153 537.7
Cco08g1844 . 1 454 U-box Gene Family AT5G65920 64.3 3.0e-154 542.0
Cco05g2930 . 1 454 U-box Gene Family AT5G65920 61.5 8.0e-147 517.3
Cco05g0188 . 1 872 U-box Gene Family AT2G45910 52.9 3.0e-235 812.0
Cco01g0483 . 68 847 U-box Gene Family AT4G25160 50.4 1.9e-213 739.6
Cco09g2079 . 1 551 U-box Gene Family AT5G40140 53.9 3.3e-94 342.8
Cco01g1435 . 29 498 U-box Gene Family AT5G40140 51.9 4.0e-55 213.0
Cco08g1083 . 1 516 U-box Gene Family AT1G76390 64.3 3.3e-175 612.5
Cco08g1086 . 26 312 U-box Gene Family AT1G76390 55.6 2.1e-84 310.8
Cco08g1083 . 1 516 U-box Gene Family AT1G20780 63.8 3.2e-178 622.5
Cco08g1086 . 35 312 U-box Gene Family AT1G20780 57.7 3.3e-90 330.1
Cco08g1897 . 1 782 U-box Gene Family AT1G27910 62.8 6.4e-269 923.7
Cco11g1436 . 1 767 U-box Gene Family AT1G27910 62.3 1.5e-262 902.5
Cco04g1512 . 1 592 U-box Gene Family AT5G67530 74.2 2.9e-261 897.9
Cco05g0251 . 657 814 U-box Gene Family AT5G67530 52.5 3.1e-45 180.3
Cco10g1866 . 12 162 U-box Gene Family AT5G67530 50.3 9.4e-42 168.7
Cco04g1594 . 48 845 U-box Gene Family AT5G65500 50.1 5.9e-209 724.5
Cco05g0459 . 1 517 U-box Gene Family AT1G04510 74.4 4.0e-222 767.7
Cco05g0459 . 1 486 U-box Gene Family AT2G33340 73.6 3.6e-209 724.5
Cco07g0210 . 10 278 U-box Gene Family AT3G07370 66.9 2.9e-102 368.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008421 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 35