Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1903 ATGGAGCTTCAACCTCAACCACAACCACAACCATCCATTGGAACTACCTGCAAGAAAGGGAAGAAGAAACCACCGGCTCGGGAGAAGAAGGACCCGGAGAAAAGAGCTAAGAAGAAGAAACCAGGGGCTACTCCTTCAGTCCTCGAACATCAACCTACTGGTCGTTTAGATGATGGCCCCAAGGTTAAGGTTTCAGAGTTTGATCGTTGTGTTGAAAACCATTTTAGAGCCATGGATACAATTGTCGAGCTCTGTTGTGAGGCAGAGGATGGCGATGGCGGCATTGACGAAACTGACATTCAGCGCTTTTCATCATCCACAATTTTCTTGAGGGAATGGAGGTTCTACAATTATGAACCGAAAACTATCAAGTTTGCTGGCGATTTAAGAGGCCTCGAGGTTAAGGATGCTGAGATCACGATAAACTTACCACAGTTCTCTTCTGCAGCTGTTCTAAAGAATGGAGCACCGCCTGCAGCCACTACATCTCTGGACTTCCGAAACTTTGCTATGCATGTTGGTGGGCCTGTTTGGGCCTTAGATTGGTGTCCTCAAGTTCATGAAAGGACCGACTCCCTTATCAAATGTGAGTTTATTGCTGTTTCTGCTCATCCCCCTGGTTCTTCTTATCACAAGATGGGTATCCCGCTCACTGGAAGAGGTATGGTGCAAATATGGTGTTTAGTGCATGGCACTGAAAGCTATGAACCGACCAATGTAGGAGAGCCACCTTCAGACTTATCATCTCAACCAAAAAGGCCTAGAGGAAGACCACCTGGGCGCAAGAAAAATGGGGTGTCGGCTTTGCCATCTCAACCAAAGAGGCCTAGAGGAAGACCTAAAAAGAAACAAGAAGAATCCAGTGATAAGAAGGGTGACAGTTACCAACTTGTTCAGGCCTTGTCTATTGAAAACCCAGTTGGTTCATCCAACTTGCTTGAGATTGATGGTGCCCCCAAAAATTCTGAAAATTTTGCATTACTGGAAAACAGTGTTGAAAGAGAGAGGAGTACCTTACAAGAAGTTTCTACATGCAATTCTGAAGATGAAGTTCCTGCTCAGAAGAGAAGAGTGAGAAGAAAAGTTGAGCCTAGGAATCAAGTTGATGACGTGGGAGTGTTATCACTTACAGAGAATCGAGAAGATGGATCCAATGCTATCAATCTTGAGGCAAATGAGAATGTTATTGGTGAAAATTCTGGGGAAGAAAATCTAATATGTAAGAACATTTCAGAGAATGCTGTCTTAGACACTAGTTCAATTGAATTTTCTATTCCCGAGAGCGTTGCTTTGCCAAGAGTCGTACTGTGTTTAGCTCACAATGGAAAGGTAGCATGGGATTTGAAATGGAAACCAACTAATGCGTGTACTGACAATTGCAAGCACCGAATGGGCTACCTTGCTGTCTTGCTGGGCAATGGATCTCTAGAAGTCTGGGAGGTTCCTTTTCCTCATGCAGTGAAGGCCATCTATCCTAAATTCAATGGGGAGGGTACAGACCCTCGCTTTGTGAAGTTGAAGCCTGTTTTCAGATGCTCGATGTTGAGAACTGCGAATACACAGAGCATCCCTCTGACAGTGGAATGGTCACAAACACCTCCTTATGATTATCTGCTCGTTGGATGTCATGATGGAACGGTTGCATTGTGGAAGTTTTCTGCAAATAGTACCTGTGAAGATACGAGGCCTTTACTTCGTTTTAGTGCAGATACAGTTCCAATAAGAGCGGTTGCATGGGCACCAAGTGAAAGCGGTCCTGAAAGTGCAAATGTGATACTTACTGCTGGCCATGGAGGTTTAAAATTTTGGGACCTAAGAGATCCTTTCCGTCCCTTGTGGGACCTTCATCCAGCACCGAGGATCATATATAGTCTGGATTGGCTTCCTAATCCTAGATGCGTTTTTTTATCCTTTGATGATGGAACATTGAGACTTCTCAGTTTGTTAAAGGCTGCATATGATGTTCCAGTAACTGGTCAACCCTTTACAGCGATAAAACAAAAAGGGCTACACACTTACTTTTGTTCATCATATGCCATTTGGAGTATTCAAGTGTCAAGGCAGACAGGCATGGTTGCGTACTGCGGTGCTGATGGAGCTGTTGTCCGTTTCCAGCTTACTACAAAAGCAGCAGACAAAGAGAATTCACGCCATCGCACCCCACATTATGTATGCGAATACTTAACCGAGGAGGGATCAATTATTACACTCCACTCTCCAGCATCAAATATTCCATTCTCTTTGAAGAAGCTGCCCAACAAATCTGAACACCCATTGTCCATGCGAGCTATTTTATCTGATTCAATGCAGTCAAATGATGGAAATCATAAAACTGCCGCAGCTCCAGCATTGGAAACTGAATCAGCCCTTTGCTCGGATGTTGATGTCGTCGTTGAATCTGGATGCGAGGAAACACTGATGTCCATCAAGAAGAAAAACCAAACTCAATCAAAGTGCAAGAAGAAGGGAGTTGAGAACCAAGAATTTGAATGCAGCGATGAGCTTAATGATGATGCACAGACGGATGCTAATGTGGTGCCTGGTTCCGGGGATGTCTTTGAAAATCTCCCTCCCAAATCAGTTGCAATGCATAGAGTGAGATGGAACATGAACATAGGGAGTGAAAGATGGTTGTGCTACGGTGGAGCAGCTGGAGTTCTACGTTGTCAGGAGATTGTGCTGTCTGCCCTCGATATGAATTATGAGACCAGAGAAGCCATTTCAAATTGCAATAATTGTTATCGCCATCGAGCCATGGTGCCTTCATTCTTGGGGGCTAAGGCGTATGTCGTGTACATGGGAGCATTACCAAAATTGGAGAGCCATGAAGTTCTAGCAGATCATCATCATAACCTCCTTGCTAATGCTGTTGGAGATAAGGAATTGGCAAGAAAAGCCAAGATTTATAGCTATGGAAGTAGCTTCAATGGATTTGCTGCAAGGCTCTTGCCCCATGAAGCCAACAAACTAGCAAAGGAAAAAAGTGTGGTGTCGGTATTTCGGAGCAAGACGAGGAAACTGCATACAACAAGATCATGGGACTTTTTGGGGCTGTCGGAGGCGGCGAGCCGGCAGAACGCCGCCGCAGAATCCGACATAATAGTGGGATTGTTGGATTCGGGGATATGGATGGAGGGTCCAAGTTTTAAAGATGATGGCTATGGCGAAATTCCGTCTAAGTGGAAAGGCAAGTGTGTCACTGGCCACAACTTCACTGCCTGTAACAGGAAAGTGATCGGCGCGAGGTTCTTCAACCTTGAAAAAATAGACGACACCATCAACCAAAGCCCCGCCGACGAGATCGGTCACGGCTCCCACACCGCCTCCACAGTCGCCGGATCCGCCGTGTACGGCGCCAGTCTCTACGGCATCGCCGGAGGCATAGCGCGCGGCGGCGTCCCGGCGGCGAGAATCGCGATGTACAAAGTGTGCTGGATCTTAGGGTGCAGCGACATGGACCTGCTGGCCGGATTCGACGACGCAATCGCGGATGGAGTTGACATCATATCGGTGTCGATCGGCGGCGACTCGACGGAATTCTTCGAGGATCCGATCGCGATCGGGTCGTTTCACGCAATGGAGAAAGGGATATTGACGAGTTGCTCGGCCGGAAATAGCGGGCCGGATTTAAAGACGGTGGAGAACACGGCGCCGTGGATAATGACGGTGGCGGCTTCTACGATTGATAGGGATTTCAGTACCATCGTCAAATTGGGTAACAACAAGAAGTTCTCTGGAGTATCAGTGAACACATTTTCTCCAAAGAAGCAAATGTACCCTTTAATCTCCGGATCAAATGCAGCATTACCAAATCATACCTCTGTTGATCCAAGGTGGTGTGATTATGGGAGTCTCGATGAGAAACAAGTGAAAGGAAAAATAGTGTATTGTTTGGGATCAGTATACCAAGAATACACCATTTCTGAGCTTGGGGGCACAGGTGTAATTTCCAATCTTATGGGCACTACTGAAATTGCCATTACCTCTCCTATTCCTTCCACTCATCTTTCCTCTCTCAACTCTAACTATGTTAGTGCCTACATTAACTCCACCAAAAACCCTCAAGCTGTCATTTACAAAACTACCGCAAAGAAGGTTGATGCTCCCTTTTCGGCTTACTTTTCTTCTAGAGGTCCTCAAACAATAGCTCCCCCTATTCTTAAGCCGGACATTGCAGCACCTGGGATTAACATTTTAGCTGCGTTCTCAAAATTGGCTTCAATTCCGAGCGACAGACATTCCCTTTTCAACCTTCTTTCTGGCACTTCTATGGCTTGTCCCCAAGCTGCCGCCATCAAGTCCGCCCTTATCACCACCGCGCCATTAAAGATCGGAGATAATTTGGACGCGACCGGCGGCGGCGCCGGCCAAATTAATCCGACCAAAGCGGTGCATCCAGGCCGCATTTACGACCTCTCTCGCACCTCTTACCTCTCTTTTCTTTGCTCCAACAAACGCTACTCCGGCACCGCCCTTGCCATCCTCACCGGAAACACCTCTTTTAACTGCTCTGCGGTCCCGCTAGCCACCGGCTACGACGCCCTCAACTACCCTTCCATGTACGTGCCCCTCGACTACGACGCCACCTCTGTTTCCGCCGTCTTCCACCGGACAGTCACCCACGTCGGATTCGGCCCATCGACGTACAAGGCAAAGGTCAAATCGCCGGCGGGTTTGTCGGTGAGAGTGTTGCCGGAGACTCTGAAATTCGATCGGGCGTACGAAAACAATCGTTTAAGGTGGTGGTGGAAGGGGCAGCGCCCGCTGTGGGGGAGGCTCCGTTGA 4785 47.38 MELQPQPQPQPSIGTTCKKGKKKPPAREKKDPEKRAKKKKPGATPSVLEHQPTGRLDDGPKVKVSEFDRCVENHFRAMDTIVELCCEAEDGDGGIDETDIQRFSSSTIFLREWRFYNYEPKTIKFAGDLRGLEVKDAEITINLPQFSSAAVLKNGAPPAATTSLDFRNFAMHVGGPVWALDWCPQVHERTDSLIKCEFIAVSAHPPGSSYHKMGIPLTGRGMVQIWCLVHGTESYEPTNVGEPPSDLSSQPKRPRGRPPGRKKNGVSALPSQPKRPRGRPKKKQEESSDKKGDSYQLVQALSIENPVGSSNLLEIDGAPKNSENFALLENSVERERSTLQEVSTCNSEDEVPAQKRRVRRKVEPRNQVDDVGVLSLTENREDGSNAINLEANENVIGENSGEENLICKNISENAVLDTSSIEFSIPESVALPRVVLCLAHNGKVAWDLKWKPTNACTDNCKHRMGYLAVLLGNGSLEVWEVPFPHAVKAIYPKFNGEGTDPRFVKLKPVFRCSMLRTANTQSIPLTVEWSQTPPYDYLLVGCHDGTVALWKFSANSTCEDTRPLLRFSADTVPIRAVAWAPSESGPESANVILTAGHGGLKFWDLRDPFRPLWDLHPAPRIIYSLDWLPNPRCVFLSFDDGTLRLLSLLKAAYDVPVTGQPFTAIKQKGLHTYFCSSYAIWSIQVSRQTGMVAYCGADGAVVRFQLTTKAADKENSRHRTPHYVCEYLTEEGSIITLHSPASNIPFSLKKLPNKSEHPLSMRAILSDSMQSNDGNHKTAAAPALETESALCSDVDVVVESGCEETLMSIKKKNQTQSKCKKKGVENQEFECSDELNDDAQTDANVVPGSGDVFENLPPKSVAMHRVRWNMNIGSERWLCYGGAAGVLRCQEIVLSALDMNYETREAISNCNNCYRHRAMVPSFLGAKAYVVYMGALPKLESHEVLADHHHNLLANAVGDKELARKAKIYSYGSSFNGFAARLLPHEANKLAKEKSVVSVFRSKTRKLHTTRSWDFLGLSEAASRQNAAAESDIIVGLLDSGIWMEGPSFKDDGYGEIPSKWKGKCVTGHNFTACNRKVIGARFFNLEKIDDTINQSPADEIGHGSHTASTVAGSAVYGASLYGIAGGIARGGVPAARIAMYKVCWILGCSDMDLLAGFDDAIADGVDIISVSIGGDSTEFFEDPIAIGSFHAMEKGILTSCSAGNSGPDLKTVENTAPWIMTVAASTIDRDFSTIVKLGNNKKFSGVSVNTFSPKKQMYPLISGSNAALPNHTSVDPRWCDYGSLDEKQVKGKIVYCLGSVYQEYTISELGGTGVISNLMGTTEIAITSPIPSTHLSSLNSNYVSAYINSTKNPQAVIYKTTAKKVDAPFSAYFSSRGPQTIAPPILKPDIAAPGINILAAFSKLASIPSDRHSLFNLLSGTSMACPQAAAIKSALITTAPLKIGDNLDATGGGAGQINPTKAVHPGRIYDLSRTSYLSFLCSNKRYSGTALAILTGNTSFNCSAVPLATGYDALNYPSMYVPLDYDATSVSAVFHRTVTHVGFGPSTYKAKVKSPAGLSVRVLPETLKFDRAYENNRLRWWWKGQRPLWGRLR 1594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32583886 32597708 + CcPI632755_10g019030.1 Cco10g1903 190861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1903 1594 Pfam Subtilase family 1031 1433 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Cco10g1903 1594 SUPERFAMILY Subtilisin-like 1007 1467 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Cco10g1903 1594 MobiDBLite consensus disorder prediction 26 44 - -
Cco10g1903 1594 ProSiteProfiles Serine proteases, subtilase domain profile. 1012 1476 - -
Cco10g1903 1594 CDD PA_subtilisin_like 1236 1358 - -
Cco10g1903 1594 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 924 1008 IPR037045 -
Cco10g1903 1594 PANTHER RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR COMPLEX SUBUNIT 21 893 IPR052416 GO:0000127(PANTHER)|GO:0006383(PANTHER)
Cco10g1903 1594 MobiDBLite consensus disorder prediction 1 61 - -
Cco10g1903 1594 ProSitePatterns Serine proteases, subtilase family, serine active site. 1421 1431 IPR023828 -
Cco10g1903 1594 Pfam Fibronectin type-III domain 1515 1577 IPR041469 -
Cco10g1903 1594 MobiDBLite consensus disorder prediction 1 15 - -
Cco10g1903 1594 Gene3D Peptidase S8/S53 domain 1032 1477 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Cco10g1903 1594 CDD Peptidases_S8_3 1006 1440 IPR034197 -
Cco10g1903 1594 Gene3D - 1229 1364 - -
Cco10g1903 1594 Gene3D - 375 742 IPR015943 GO:0005515(InterPro)
Cco10g1903 1594 PRINTS Subtilisin serine protease family (S8) signature 1030 1049 IPR015500 -
Cco10g1903 1594 PRINTS Subtilisin serine protease family (S8) signature 1099 1112 IPR015500 -
Cco10g1903 1594 PRINTS Subtilisin serine protease family (S8) signature 1420 1436 IPR015500 -
Cco10g1903 1594 SMART WD40_4 511 551 IPR001680 GO:0005515(InterPro)
Cco10g1903 1594 SMART WD40_4 608 647 IPR001680 GO:0005515(InterPro)
Cco10g1903 1594 SMART WD40_4 431 480 IPR001680 GO:0005515(InterPro)
Cco10g1903 1594 SMART WD40_4 666 705 IPR001680 GO:0005515(InterPro)
Cco10g1903 1594 SMART WD40_4 560 604 IPR001680 GO:0005515(InterPro)
Cco10g1903 1594 Gene3D - 1481 1586 - -
Cco10g1903 1594 Pfam Peptidase inhibitor I9 929 1008 IPR010259 -
Cco10g1903 1594 SUPERFAMILY WD40 repeat-like 465 723 IPR036322 GO:0005515(InterPro)
Cco10g1903 1594 MobiDBLite consensus disorder prediction 237 294 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0709 Cco-Chr7:12792063 Cco10g1903 Cco-Chr10:32583886 2.50E-145 dispersed
Cco07g0711 Cco-Chr7:13051037 Cco10g1903 Cco-Chr10:32583886 2.40E-143 dispersed
Cco10g0399 Cco-Chr10:4707476 Cco10g1903 Cco-Chr10:32583886 6.30E-57 dispersed
Cco10g0400 Cco-Chr10:4718153 Cco10g1903 Cco-Chr10:32583886 3.20E-98 dispersed
Cco10g1903 Cco-Chr10:32583886 Cco11g1214 Cco-Chr11:24120027 1.00E-47 dispersed
Cco10g1903 Cco-Chr10:32583886 Cco04g1202 Cco-Chr4:27448513 3.80E-199 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1903 - - - 0.0