Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1912 ATGGACTTTGATCTGAAGCAATGTAGAACACAGAGGGAGTCAGAGGAGCAACAACATTCTGCAAAGATTTCTAAGTTGTTTGTTGAACAGACCCATCATCTTTCTTCTTCTTCCACTTCTGTTCTTCCTTTGTTTGTACCTGCTGATTCCAACAACAACTCCAAAACTTCCAACATCTTGTCAGCATTTCAAGATTCAACTTCTTCTACGTTACCCAGGATGCTGGGTTATTTCAGTGTGGCTCAAAGGCAAGAACTTGAACTTCAAGCTCTCATTTTCCGGTATATGTTGGCCGGCGCCGCCGTCCCGCCGGAGCTTCTCCACTCTATTAAGAAAAGCCTTATCTCTTCCTCTTCTACTACTTTCTATCTTCATCATCCTCTTCAACATTTCCCTCACTATCCCACTTCTTTGTTGCAAGCAGGGTATTGGGGCAGAGCCGCCCTGGATCCGGAGCCTGGTCGGTGCCGGAGAACCGACGGCAAAAAATGGCGTTGCTCAAGAGATGTCGTCGCCGGCCAGAAATACTGTGAGCGCCATATGCACCGTGGCCGTAACCGTTCAAGAAAGCCTGTGGAAACTACCACAACTAACCCCTCCACCACCGCCGCCGCTGCTGGCGGCGGTGGCGGCGGTTGTTCTCTCAGTTCCAACTCCAACCGTGTTATTGGTGGCGGTGGTGGTCGGCCTTTTTTGACTGTGGAAAGTGGAAATTATTTCTCTACGTGTGGACAAACCCCATCCGTTGATCTTCTCCATCTCAATCAAGGTTCTTGTTCTAATTCCTTATCAGAGAACAAGAAATTCTATGAATCCCACAAAGAGCCTTCCGCCGGAGATGCTAAATCCGACGGCCACATTTTAAGGCATTTTTTCGACGATTGGCCGCGGTCCGAAAATGGTGGTTGTGGGGTTGACAACAGTGTCAACCAACGAATGAACTCCACGTCTGCTTCTGCAACATCCCTTTCGATTTCGATGCCTGGGAACCCTCCGTCATCGTCTTCTGACGTGTCGTTGAAATTGTCGACAGGAGGAAGTTCTGATCAAGGCAGTGACCACCATATCCACCAAAATGGCAACGTTGACCGAGAACAGGTGCAGTTGAATTGGGCTGCAGGATGGGCCGCCACGCAGATGGCGTCAATGGGCGGACCGCTGGCTGAAGCGCTGCGCTCCGCCAACAACAACTCGTTGCCAACGAGTGTGCTGCATCAGTTGCAAAGAACAACCAACTCGGAAGCTAGCTTTATTAGCACTTGA 1263 49.8 MDFDLKQCRTQRESEEQQHSAKISKLFVEQTHHLSSSSTSVLPLFVPADSNNNSKTSNILSAFQDSTSSTLPRMLGYFSVAQRQELELQALIFRYMLAGAAVPPELLHSIKKSLISSSSTTFYLHHPLQHFPHYPTSLLQAGYWGRAALDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVETTTTNPSTTAAAAGGGGGGCSLSSNSNRVIGGGGGRPFLTVESGNYFSTCGQTPSVDLLHLNQGSCSNSLSENKKFYESHKEPSAGDAKSDGHILRHFFDDWPRSENGGCGVDNSVNQRMNSTSASATSLSISMPGNPPSSSSDVSLKLSTGGSSDQGSDHHIHQNGNVDREQVQLNWAAGWAATQMASMGGPLAEALRSANNNSLPTSVLHQLQRTTNSEASFIST 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32711410 32713364 - CcPI632755_10g019120.1 Cco10g1912 190870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1912 420 MobiDBLite consensus disorder prediction 303 355 - -
Cco10g1912 420 SMART QLQ_2 76 112 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco10g1912 420 PANTHER GROWTH-REGULATING FACTOR 5 47 334 IPR031137 GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro)
Cco10g1912 420 ProSiteProfiles WRC domain profile. 150 194 IPR014977 -
Cco10g1912 420 MobiDBLite consensus disorder prediction 299 358 - -
Cco10g1912 420 ProSiteProfiles QLQ domain profile. 77 112 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco10g1912 420 Pfam WRC 151 193 IPR014977 -
Cco10g1912 420 Pfam QLQ 78 110 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco10g1912 420 MobiDBLite consensus disorder prediction 181 212 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g1912 Cco-Chr10:32711410 Cco11g0170 Cco-Chr11:1722325 2.10E-27 dispersed
Cco10g1912 Cco-Chr10:32711410 Cco07g1484 Cco-Chr7:28990710 3.40E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60171 PF08879 WRC 2.70E-22 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1912 - - - 0.0