Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1916 ATGGCTTCTTCCTCCAGCCGCCACCCCGTTTACCGAGGTGTTCGCCGCCGCAACACTGGCAAATGGGTCTCCGAAATTCGCGAGCCAAGGAAGCCCAACCGTATTTGGTTAGGAACTTTCCCGACTGCTGAAATGGCCGCCGTCGCTTACGACGTTGCAGCCCTTGCCCTCAAGGGCCAAGATGCCGAGCTTAATTTCCCTAATTCTGCTTCGTCTCTCCCCGTCCCCGCGTCTAGGTCACCGTCTGATATTCAGGCGGCAGCTGCATCGGCCGCCGCTGCGCTTGGAGCGGCTGCGGCGGCCATGGAAGCACGAAATAATAATGGTTCTTGTCGTGGAACTAATTCCGGCGATGTTGTTTATGGAGGAAGATATGGTCAAGATGGATTTGGAAATCAGTTCATGGATGAAGACTTGATTTTTGATATGCCTAATGTTCTAATGAACATGGCGGAAGGAATGCTTCTTAGCCCTCCTCGTTTCAATATCCATTGCGGAGACGATGACGGCGACAACGGCGCTGACCAAAATCTCTGGAATTTTCCCTAA 549 52.64 MASSSSRHPVYRGVRRRNTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKGQDAELNFPNSASSLPVPASRSPSDIQAAAASAAAALGAAAAAMEARNNNGSCRGTNSGDVVYGGRYGQDGFGNQFMDEDLIFDMPNVLMNMAEGMLLSPPRFNIHCGDDDGDNGADQNLWNFP 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32766924 32767472 - CcPI632755_10g019160.1 Cco10g1916 190874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1916 182 CDD AP2 11 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g1916 182 SUPERFAMILY DNA-binding domain 10 69 IPR016177 GO:0003677(InterPro)
Cco10g1916 182 Gene3D AP2/ERF domain 10 69 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g1916 182 SMART rav1_2 10 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g1916 182 Pfam AP2 domain 9 59 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g1916 182 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 5 181 IPR045277 GO:0003700(InterPro)
Cco10g1916 182 ProSiteProfiles AP2/ERF domain profile. 10 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g1916 182 PRINTS Ethylene responsive element binding protein signature 11 22 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g1916 182 PRINTS Ethylene responsive element binding protein signature 33 49 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g1916 182 FunFam Ethylene-responsive transcription factor 2 9 68 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0592 Cco-Chr1:5879444 Cco10g1916 Cco-Chr10:32766924 6.10E-33 dispersed
Cco04g1192 Cco-Chr4:27355880 Cco10g1916 Cco-Chr10:32766924 1.80E-42 dispersed
Cco10g0374 Cco-Chr10:4367754 Cco10g1916 Cco-Chr10:32766924 5.40E-35 dispersed
Cco10g1916 Cco-Chr10:32766924 Cco11g1567 Cco-Chr11:28561775 5.80E-27 dispersed
Cco10g1915 Cco-Chr10:32757745 Cco10g1916 Cco-Chr10:32766924 1.40E-26 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60173 PF00847 AP2 8.70E-13 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1916 - - - 0.0