Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1917 ATGGAAATGGATGATCAATATGCCCTCTCCGATCTCCGCCACCTCATCACTACTGCCCCATCTCGCTCTCATTTCCCTTCTTCTTCCTCAATTCCCCACCATGATCTCTCCTCCTCCACGGCCGCTGCCGCCGCCTTCCGCCACCACCATAATCCCTACGACCTCATCATGATGATGCCACGTGACACTCCGCTACCCGACTTTCGCTCCGATTCCGCCACCACACCACCCGCCATCGTCTCCGCTCAGCCAGGTCCCTCAGCTTTCGAGCTCGAAACCGCCTCCATCGCCGCCGACTGCGCCACCGCTCGATGGCCTCGCCAAGAAACTCTTACTCTCTTGGATATCAGATCTCGACTTGATTCTAAGTTCAAGGAAGCCAACCAAAAAGGACCCCTTTGGGATGAAGTTTCTAGAATCATGGCTGAGGAACACAATTATCAAAGAAGTGGAAAAAAATGCAGAGAAAAGTTTGAGAATTTATATAAATATTACAAAAAAACAAAGGAAGGCAAAGCTGGAAGACAAGATGGTAAGAACTACAGATTCTTTAGGCAGTTGGAAGCTCTCTATGGTGAAACAAGCAATTCCCCTTCACTTCCAGATTCCCATTTTGTTGGAGACACCAACCTTAGATTCCAACAGAACGGGACTAACAACCCGACTGCGGCACCTCCGATGAGCCACGAAGCTCACCAGAAGCATTACTGCGATAGCCTCAGCCTCTCGAACACGTCAGAGTTCGAAACCTCGGCCTCGTCAGATGGAAACGACGACCCCAGCTCGGTTGGCATTATGGACAACGATTCAATGGAGAAGAGGAGGAAGAAGCGAGGCGGGAAATGCTGGAAGGCGAAAATCAAACAGTTCATCAACTCGCAAATGCGGAAGCTAATTGATAAACAAGAGGCTTGGTTGGAGAAGCTCATGAAAACTCTTGAACAAAAGGAAAAGGAGAGAATGATACGCGAGGAGGAATGGAGGAGACAAGAAGTGTCAAGAATGGACAGGGAGAGAAGCTTTTGGGCAAAGGAGAGAGCATGGATAGAATCTAGAGATGCTGCATTAATGGATGCATTACAAAGGCTAACAGGACGAGAATCGAGAGATAATCAATACAACTCCTCACCCGACCTCGGATTAATCGTAGCCGAGCGTCATAGAAATAATAATGAGAACCAAAACGAGGACGGGAGCGAAATACTAAACAACAACACAGCTAGAGAATTAGTAGCAGACAACAATAATTACCAAAGGAAAATAATAGACAATCAAGGCAACAAGAAACGCAAGGAGAATTCAACATCAACAGCCACCGCCTACAATCTTTACTTCCAACAAACAGATTCCACCCTTTACAGTCGTGGCGGTGGCGGTGGCGGACCGTACGGCAGTGCCACCAACATCAAAGAACAAAGTCCAAACAGTTCAAACGTGGGCGGTGGCGGCGGCGGCGTGGTGCAAGATAATTGCTTTCGCTTCTTGATGGGTGAAGGAGATCAATCTCAATCTGGTTTATGGGAAAATTTTGGTCTTAAACTCAACAATGGAAGTGACCAAACTTGA 1566 47.7 MEMDDQYALSDLRHLITTAPSRSHFPSSSSIPHHDLSSSTAAAAAFRHHHNPYDLIMMMPRDTPLPDFRSDSATTPPAIVSAQPGPSAFELETASIAADCATARWPRQETLTLLDIRSRLDSKFKEANQKGPLWDEVSRIMAEEHNYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKNYRFFRQLEALYGETSNSPSLPDSHFVGDTNLRFQQNGTNNPTAAPPMSHEAHQKHYCDSLSLSNTSEFETSASSDGNDDPSSVGIMDNDSMEKRRKKRGGKCWKAKIKQFINSQMRKLIDKQEAWLEKLMKTLEQKEKERMIREEEWRRQEVSRMDRERSFWAKERAWIESRDAALMDALQRLTGRESRDNQYNSSPDLGLIVAERHRNNNENQNEDGSEILNNNTARELVADNNNYQRKIIDNQGNKKRKENSTSTATAYNLYFQQTDSTLYSRGGGGGGPYGSATNIKEQSPNSSNVGGGGGGVVQDNCFRFLMGEGDQSQSGLWENFGLKLNNGSDQT 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32784669 32787460 + CcPI632755_10g019170.1 Cco10g1917 190875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1917 521 Coils Coil 299 326 - -
Cco10g1917 521 CDD GT1 104 169 - -
Cco10g1917 521 MobiDBLite consensus disorder prediction 247 280 - -
Cco10g1917 521 PANTHER FI21293P1 92 434 - -
Cco10g1917 521 MobiDBLite consensus disorder prediction 211 226 - -
Cco10g1917 521 MobiDBLite consensus disorder prediction 453 482 - -
Cco10g1917 521 FunFam trihelix transcription factor PTL-like 105 167 - -
Cco10g1917 521 MobiDBLite consensus disorder prediction 247 264 - -
Cco10g1917 521 Pfam Myb/SANT-like DNA-binding domain 104 190 IPR044822 -
Cco10g1917 521 MobiDBLite consensus disorder prediction 466 482 - -
Cco10g1917 521 Gene3D - 105 167 - -
Cco10g1917 521 MobiDBLite consensus disorder prediction 211 232 - -
Cco10g1917 521 ProSiteProfiles Myb-like domain profile. 104 162 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2423 Cco-Chr5:32751963 Cco10g1917 Cco-Chr10:32784669 3.60E-53 dispersed
Cco08g0454 Cco-Chr8:11275473 Cco10g1917 Cco-Chr10:32784669 1.20E-34 dispersed
Cco08g0457 Cco-Chr8:11466074 Cco10g1917 Cco-Chr10:32784669 3.70E-21 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60174 PF13837 Myb_DNA-bind_4 2.40E-19 CL0123 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1917 - - - 0.0