Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1923 ATGGAAATGGAGAGCTCGCGGAGACCTTTCGATCGAACCAGGGAACCGGGTTTGAAGAAGCCGCGACTGGCCGATGAGGCTGAACGCGGTGGGAACATCAATGGCCGGCCGTTTCCGCAGAGACCAGTTGTTTCCGGGAACAATATTGTGCAACCACCCAGATTTCGAGCAAGTGATAGGGATTCGGGAAGCAGTGATTCTGGTCGAGGGGGGTATCAACCTCAGCCACCGCAGCATCAGGAGCTTGTGAGCCAGTACAGGACCGCCCTTGCGGAGCTGACTTTCAATTCCAAACCAATCATCACGAATTTGACCATAATCGCGGGTGAAAATCTTCAGGCTGCGAAGGCGATCTCTGCCACCGTTTACGCCAACATTCTCGAGGTTCCTAGTGAGCAGAAGCTACCATCACTTTATCTATTGGACAGTATTGTAAAGAATATTGGAAGAGATTATATAAAATACTTTGCAGCAAGACTACCGGAGGTATTCTGCAAAGCTTATAGGCAGGTTGACCCTTCTGTACATCCAAGTATGAGACATCTGTTTGGCACCTGGAAAGGAGTGTTTCCTCCTCAAACTCTGCAGATTATTGAGAAAGAACTTGGGTTCGTGCCTAGCGGTAGTTCTTCTTCTGGGGCCATAACCTCCAAGCCAGATTTGCAGGCACAACGTCCAACTCCCCATAGTATCCATGTAAATCCCAAGTATATAGAGAGGCAGCGGCTTCAGCAGTCAGGCAGGGTGAAAGGAATGACTAGTGATGCTACTGGTGTGACAACAAATGTAAGTCAGGATGTAGCCCAAGCCAAAATTAATACTGGACGTCCATGGGCAGATGCTCCAATTAAAGTGCTTGACATTCAGCGTCCCCTTAGAGATGCACCAAATGATATGGCACAAGAGAAGAGCATCACGGCTGGATTTGCAGACTACGAATATGGTTCTGATCTTTCAAGGACATCAGGTGTTGGAAGAAGGGTCGTTGATGAAGGGCGAGACAAACCTTGGTCTTCAGCTGGAAACAATTTGGCTGAGAAACTATCTGGTCAAAGAAATGGGTTCAACATCAAGCTTGGATATGAAAATTACCCTGCACCCAAGTCTGCAAACACTGGTTCACGTCTACTGCCCGTGCAAAATTTTTCAAGCAGCAGCAGCAACAGAGTATTGTCTACTAACTGGAAGAACTCTGAGGAAGAGGAGTTTATGTGGGGTGAAATGAACTCTATGTTGACAGGTCATGGTGCACCTGCTATCGCCGGTAGCACTGGAAAAGATCAATGGACTCCTGAGGATTCGGATAATTCGGGTATGGACAATAAGCCATTAAGTGTACGGGATACTGGGGCAAGTGTTGATAGAGAAGCTTCCAGTGATTCACAATCATCTGAGCAAAGAGAACTGGGGGATTCTGGACAACAAAGGTGTACGTGGCAACTGCAAGAGGCAATATCTCTGGATGGGCTAAGAGGCGGGGTTCCTAGAAAGAATTCAGGTCAGTCAGGAGGTTATAGTGCTACTCTTACTGCACTGTCAGGTGCTAACTCTTCATCTAATATTGGGGCTTCAGGACATGGGTTTATTAATAAGGGAGGTTCAGGGCCCCTTGGGACTGTAAGCCATCAAAGATTTCCATCACGAAGTGTTGCATTCCCATCTGGACAACCACCCTTGCACCAACGCCCCCCTTCACCATTGTTAGTGGATCATGTTCCTCATCAAATACATGACCATAAAACAACTTCATTTTCTAATCTTGATCCACGTAAAAGGCATATGCAGGATGCTGCCCTTGGCCTGCATCCCAGCGTTCGACCAGATAATCTTCAAAAGCCCCTGCCTCATGACCTACAAGCTCCAGCTTCATCCATACCTGCGTCTCAACCTAGGCACCAGTTCTCTTTATCTGAGTCACTAAAACCTGATGTTACACAGTCAGAACTTTCTAGTCAGCATGCAGTATCAATTCCGGGCACCGATATTGGACCATCCTCATCAGCTGGGACAGTTCCAGATCATTTACCTGCAGAAATTTTGGGAGAGCCAAGCACTAGTAGTTTGTTGGCTGCTGTAATGAAGAGTGGACTTTTCTCCAACCATTCAATAACCAGCAGCATGCAGCAGAATATCGGCTTCCAAGATGTGGGAAATATGAAACCTCGCTCAAGCATTAAACCTCCTCTACCAAGCCGGTCTTCTCCTGCCCATACATTCGCAGAGCCAAAGATTCAGGGAGAATCCCCAGTAGGTCCTCCATCACTTGAAAGCCCATCAACTATGGTTAAGTTGTCTCGAACTAAGGTAGAAGAACCATCGTTGCCATCTGATCCACTCCCACCTTCATCTCCTATGAACAGTGCATCCACTGAAACTTCAAATGTGGTAAATGATGCTTCTAGTCCAATTTCTAACCTTTTGAGCTCATTGGTTGCAAAGGGCCTTATATCAGCTTCAAAAGGAGAATTAACAAATAGTGTGACATCCCAGATGCCTTCACAGCATGAAAATTTGAAGTCAGGTGATGCTGTGACTAGTTCTGTACCAGTTCCTTCCATCCCTGTTTCCTCTGCCAGTCACTCATCTATGAGACTTGAATCACCTTCAAAAGCTGCTGCTAGGAGCTCTAGTCCACCTCCATCTGCCACAACTGAAATAAAGAACCTCGTAGGTTTTGAGTTTAGTTCACATGTTATTCGCAAATTTCATCCATCTGTGATCAGTGGACTCTTTGATGATATTCCATACCAATGTAAGATCTGTGGTCTTAGACTGAAATGTGAAGAACAGTTGGAAACTCACTCACGGTGGCACACATTAAGAGCTGAGGCAAACAATTCTAGTAGCGCACCAAGAAGATGGTATCCAAGTTCAAGTGATTGGATTTCTGGAAATGCGAGACTTCTACTTGATGCTGCAACTTCTCTGGACGAGTTCAACATGATGGAAGGAGATAATGAGCCAATGGTTCCTGCAGATGAAGATCAATTTGCCTGTGTTATATGTGGTGAACTTTTTGAAGATTTTTATAGTCAAGAGTTGGGTAATTGGATGTTCAAAGGAGCAATGTATATCACCATCCCATCAGTGGGTAGCGAGGTAGGAAGCACAAATGAACAAGTTGCCAGAGGACCCATTGTGCACACGAATTGTTTGACTGAAAGTTCAGTATATGACGTGGGAGTGGCAACTGATAGTAAGATGGAAATGGATGTATGA 3219 45.76 MEMESSRRPFDRTREPGLKKPRLADEAERGGNINGRPFPQRPVVSGNNIVQPPRFRASDRDSGSSDSGRGGYQPQPPQHQELVSQYRTALAELTFNSKPIITNLTIIAGENLQAAKAISATVYANILEVPSEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPSVHPSMRHLFGTWKGVFPPQTLQIIEKELGFVPSGSSSSGAITSKPDLQAQRPTPHSIHVNPKYIERQRLQQSGRVKGMTSDATGVTTNVSQDVAQAKINTGRPWADAPIKVLDIQRPLRDAPNDMAQEKSITAGFADYEYGSDLSRTSGVGRRVVDEGRDKPWSSAGNNLAEKLSGQRNGFNIKLGYENYPAPKSANTGSRLLPVQNFSSSSSNRVLSTNWKNSEEEEFMWGEMNSMLTGHGAPAIAGSTGKDQWTPEDSDNSGMDNKPLSVRDTGASVDREASSDSQSSEQRELGDSGQQRCTWQLQEAISLDGLRGGVPRKNSGQSGGYSATLTALSGANSSSNIGASGHGFINKGGSGPLGTVSHQRFPSRSVAFPSGQPPLHQRPPSPLLVDHVPHQIHDHKTTSFSNLDPRKRHMQDAALGLHPSVRPDNLQKPLPHDLQAPASSIPASQPRHQFSLSESLKPDVTQSELSSQHAVSIPGTDIGPSSSAGTVPDHLPAEILGEPSTSSLLAAVMKSGLFSNHSITSSMQQNIGFQDVGNMKPRSSIKPPLPSRSSPAHTFAEPKIQGESPVGPPSLESPSTMVKLSRTKVEEPSLPSDPLPPSSPMNSASTETSNVVNDASSPISNLLSSLVAKGLISASKGELTNSVTSQMPSQHENLKSGDAVTSSVPVPSIPVSSASHSSMRLESPSKAAARSSSPPPSATTEIKNLVGFEFSSHVIRKFHPSVISGLFDDIPYQCKICGLRLKCEEQLETHSRWHTLRAEANNSSSAPRRWYPSSSDWISGNARLLLDAATSLDEFNMMEGDNEPMVPADEDQFACVICGELFEDFYSQELGNWMFKGAMYITIPSVGSEVGSTNEQVARGPIVHTNCLTESSVYDVGVATDSKMEMDV 1072
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32829427 32835895 - CcPI632755_10g019230.1 Cco10g1923 190881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1923 1072 CDD CID_Pcf11 83 195 IPR047415 -
Cco10g1923 1072 MobiDBLite consensus disorder prediction 414 475 - -
Cco10g1923 1072 MobiDBLite consensus disorder prediction 455 475 - -
Cco10g1923 1072 MobiDBLite consensus disorder prediction 783 797 - -
Cco10g1923 1072 Pfam CID domain 88 196 IPR006569 -
Cco10g1923 1072 MobiDBLite consensus disorder prediction 1 29 - -
Cco10g1923 1072 FunFam polyadenylation and cleavage factor homolog 4 75 203 - -
Cco10g1923 1072 ProSiteProfiles Zinc finger C2H2 type domain profile. 916 943 IPR013087 -
Cco10g1923 1072 MobiDBLite consensus disorder prediction 714 797 - -
Cco10g1923 1072 MobiDBLite consensus disorder prediction 622 640 - -
Cco10g1923 1072 MobiDBLite consensus disorder prediction 602 640 - -
Cco10g1923 1072 SMART 558neu5 81 203 IPR006569 -
Cco10g1923 1072 MobiDBLite consensus disorder prediction 1 78 - -
Cco10g1923 1072 MobiDBLite consensus disorder prediction 427 443 - -
Cco10g1923 1072 ProSitePatterns Zinc finger C2H2 type domain signature. 918 938 IPR013087 -
Cco10g1923 1072 Gene3D - 73 203 IPR008942 -
Cco10g1923 1072 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 59 1069 IPR045154 GO:0000993(PANTHER)|GO:0000993(InterPro)|GO:0003729(InterPro)|GO:0003729(PANTHER)|GO:0005737(PANTHER)|GO:0005849(PANTHER)|GO:0006369(PANTHER)|GO:0006369(InterPro)|GO:0006378(PANTHER)|GO:0031124(InterPro)
Cco10g1923 1072 MobiDBLite consensus disorder prediction 824 882 - -
Cco10g1923 1072 ProSiteProfiles CID domain profile. 78 206 IPR006569 -
Cco10g1923 1072 MobiDBLite consensus disorder prediction 752 766 - -
Cco10g1923 1072 SUPERFAMILY ENTH/VHS domain 78 203 IPR008942 -
Cco10g1923 1072 MobiDBLite consensus disorder prediction 64 78 - -
Cco10g1923 1072 MobiDBLite consensus disorder prediction 209 229 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0294 Cco-Chr3:3190752 Cco10g1923 Cco-Chr10:32829427 5.40E-74 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1923 K14400 - csv:101223169 1858.96