Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1925 ATGGAAATGCCCGGCAGGAGGTTGAACTATACGCTTCTCAGTCAAATTCCAGACGACCAATACAGTGGCGGTGTTGCCGGAGCTTCGACAACGTTTAAAGAAACATCATCGGGAGAGGGGAAGAACGACAGGAGGAAGTTGGAAAGAGGATTGGATTGGGAAGCTGCTGGTGATCACAGGGCGGGCCAGCAGCAGCAGGTTAATTGGATCGGCAATATGTATTCGGCGTTTGGTTTGCAGAGGCAGTCCAGTGGAAGCAGCTTTGGAGAGAGCTCGATATCCGGGGAATACTATGCACCGACACCATCTACTACGGTGGCTAATGAGACGGATGGGTTTGGTTGTACGCACGATGATGTGCTTAGAATTGGAGGCGATTCGAGAGCACAGATGGCCGAGATGGCCGCTGGGGCTGGAGGATCTTCTGCTAAGACTTGGGCGCAACAGACGGAGGAGAGTTATCAACTGCAGTTGGCATTGGCGCTTCGGCTTTCATCTGTGGCCACTTGTGCTGATGATCCTAATTTCTTAAATCCATTTCAGGATGATTCAGCTTTAAGGAGGTCGATGAGCTCTGTTGAGGCTGTGTCACATCGATTTTGGGTGAATGGCTGTCTATCGTACTTTGACAAAGTTCCTGATGGGTTTTATCTAATCCATGGAATGGATCCATATGTGTGGACTGTGTGCACCAGCCTGCCTGACAATGATCGCATGCCATCAATTGAATCTCTAAAGTCTGTTGATCCCAGTACAGATTCGTCAATTGAAGTTGTTCTGATTGATCGGCGCACTGATCCCAACTTAAAAGACCTCCAAAATTGGGTCCAAGGCATTTCTTGCAGCTCTATAACTACAGAAGAGGTTGTAGATCAGCTTGCAAAACTTGTCTGTAGGAGTTTGGGTGGCTCAGTTTCTGGAGAAGATGCGTTGGTGTCCATCTGGAGGGAGTGCAGTGATAACTTGAAGGAGACCTTAGGCTCAGTGGTTATTCCTCTTGGTGGACTCTCTGTAGGACTCTGCCGGCATCGTGCTCTTCTTTTCAAAGTGTTAGCTGACACAATTGATTTACCCTGTCGTGTAGCCAAGGGCTGTAAATATTGCTCATGCCATGATTCTTCTTCTTGTCTAGTTCAGTTTGGGCTTGACAAGGAGTATCTGGTTGACTTAATTGGCAATCCTGGTTGCTTATATGAGCCTGATTCTTTACTCAATGGTCCATCCTCCATTTTGATCTCCTCGCCATTGCGATTTCCACGACTAAAGCCAGTAGAGCCTGCCATTGATTTCAGGTCACTGGCTAAACAGTACTTTTCAGATTGCCAGTTGCTCAATGTTGTTTTCGATGAAGCTTCCTCATGTAATCACTCAGAAATTACTGTGGATGGAGAAGATGGCGCACTCCCATTGTATTTAAAGCAGTTTGATAGGAAGTTCACAAACAGAAGCAACCAAATGCTTGTCACTGGTGATAGTGATGAAAAATCCATTTTACTGCATGCAAAAACTTCGCAGCCTAACTCCCAAGACAGGGATTTCCAACTGTATAAACCACGTGATAATTCTCATAATTTTATACAACCAACTGTCCAGGTTGAGGATTCAATCCCACTGAAGTACGGTCCACATATTAATCGTGGAAGTGTGCAGTCACTTTTGGATATGTCCCAGCCAAGGATGGATTCTACTATGGACTTAAGGTTTGCACCGGGAGGTCAGCTAATACCAAGCACTCGGAGTAAAACACTTCCCCTTGGTGCGGAGGATTTGGACATTCCATGGAGTGATCTTGTTTTAAAAGAAAGAATTGGAGCAGGTTCCTTCGGAACTGTGCATCGTGCTGATTGGCATGGATCGGAAGTTGCTGTGAAGATCCTCACAGAACAAGACTTCCATCCTGAACGCGTTAATGAGTTTCTGAGAGAGGTTGCTATCATGAAATCCTTACGACATCCTAATATTGTACTGTTTATGGGTGCGGTGACCAAGCCACCAAACCTATCCATTGTCACGGAATATCTATCGAGAGGTAGCTTGTATAGGCTTTTGCATAAGTCAGGTGTCAAAGACATAGATGAAACCCGTCGGATAAATATGGCTTTTGATGTGGCAAAGGGAATGAACTATCTCCACAGACGTGATCCTCCAATTGTTCATCGTGATTTAAAATCACCTAATCTTTTAGTTGACAAGAAGTATACAGTAAAGGTTTGTGATTTTGGTCTCTCCCGTTTAAAGGCACGCACATTTCTTTCGTCCAAATCCGCTGCTGGAACACCTGAATGGATGGCGCCAGAAGTACTACGTGATGAACCCTCAAATGAAAAGTCAGATGTTTACAGTTTTGGAGTGATCTTGTGGGAGTTGGCAACTTTGCAACAGCCATGGTGTAATCTAAACCCAGCTCAGGTTGTTGCAGCTGTTGGATTCAAGGGCAAAAGGCTTGACATCCCACGCGATGTAAATCCCAAATTGGCTTCCTTAATAGTGGCTTGCTGGGCCGATGAGCCGTGGAAACGTCCATCTTTTTCCACCATAATGGAAACCTTGAAGCCAATGACTAAACAAGCACCACCTCAACAAGGCCCGGTCCAAAGCGGTCGCTTTCAGACCAAAAGGACCGGTCCACTAAAACCGTACGGACAAAAAGATGTAAAATCCGAGTGGTTGTGGCCAGTTTCCCCCAACCACAATAACGGCCTTCCGAAACACCGCAGCTTCTGCGAAAACGATCTGATCAACGAAGGTCGGTTCTTCTTTCAATATTTGCCATTGCTTCCCTTCAATTTGTGGAGAATCCAAAGCCCTAAACTTTTTGGCAGTGTCTTAATGGGGTCCCGGCACGAGCAACGACACCACTGTAGAGCTACTACTCGATTCACAGTCACTGTCTCCACCGCCTTTGAATTTCTTTCCCCAGATTTTTATCCGACACCTTGTCGGCGGAAACTTCTGTTTTGCGCCCTTATATATACTCTGCTCCATTTACAGAAATTCATAATGAAACCCATTGAGGAGGGTGATTCGGTTTCTCCTATCGAGGTATCTTCTTCTTCTGCTCAATCGGAGTTTGATGCTGCTGGGTTTTCTTCAGACCCTGAATTGATGTTATTGCCCTTTTCGCGGCCATTAATGGGTTCTGAATCGTTTTCTCCTTGTGGGTCTTTTCTTGAGGATACAGCAGCAGGGCTTTCGATGGTGAGTATTGGTTTTTCTTCATCTCCATCTACCGGAGACTTTTTGGCTGAAAACCCAATGCCATCTTCTTCTGCACACCACATGTTCGACGTAATGCATGAACCAGATAAAGGAGCTTTGGATCCATTTGTGGTGCCATCTATGGGGAGTGATGTGCCTCGACCGCTGGAATCCCTTCATGGCCAGTTTGTTCCGCCATTTCTGTGGAAGACTTTCGACATTGTTGACGATCCTGCGCTTGATCCGATTGTATCTTGGGGTTCAGCGGGGCAGAGCTTTGTGGTTTGGGATCCCGTGGAGTTTTCTAGAGTGATTCTTCCTTCTAATTTCAAGCACAACAACTTCTCCAGTTTTGTCAGACAGCTAAACACTTATGGGTTCCGCAAGATTGATACGGACAAGTGGGAGTTTGCGAATGAAGCTTTCCAACGAGGGAAAAAGCACTTATTAAAGAACATTCAGAGGCGCAAATCACCTCATTCTCAGCAGATTGGAAGTTTGATAGGGCCATCTAGTGGAGGAGGGAAGTCTGGAATAGAAGATGAGATTGGAAGGTTAAAGAAAGAGAGGAGGATGTTAATGCAGGAGGTTGTTGAATTGCAGCAGCAGCAGAAGGGGACTGCTCAGCAGGTGACTACGGTGAACCGACGTCTCCAGTCAGCAGAGCAGAGGCAGAAGCAGATGATTTCTTTCTTGGCGAAGTTGCTTCGGAATCCAGAATTCTTATTTCGCTTGCAGAAAAAGAAGGAACAGAAAGATATCGATTCCCTAAGGACGAAACGGAAATTTGTTAAGCAGCATAAACATGAAGCAGATGGTTTTACACCGCCCATGGAAGGGCAGATTGTAAGATACCAATCTGATTGGGAAAGTCTCGCCAGATCTTCAACAGCACTGGATTTGAATCCAGGCCTGCCTGAAGGAACTTTTGCTTACCTTCTGGAGGGAGTATTTGGAGAATTGGGATCAATTCCAGAGAGTATGCCTAATTTTCAATTTAAGAATGTTTCATCAAGCGATGTAATTGCGTCCAAGGAATTAGCATTCCATCATGGAATTGTAAACCCAACAGAGGAGCTGAGGAGGGTAGAGGCTTCAAACATGTCAATGGAGGATCAACATTTCAAGGGAAAGTCTATTGAGAGTCCCCCAGAATCCAATCCTGACTATTTTCTCTCTTTAACAGAGGATATTCTACCGTCCTCACATCAGGAAACTGAAAGTGTCATTAAACCAGAAGAAATTTGGAACGCATATTTGAATGTTGATGCTGGTTCATCCGGTTCAAGCAACGAGTTGTGGAGTAATCCAGTCGGCTTCGAGGATCCATTTTTGCAAGTCTCTAGCCGACTGTCAACAATCTGGGATTTGGGCTCCCAGCAGGCTGGAGACTCGGGCACAGATAAGTGGTCAGCTTCTGGTTTCCCATTCGATGATCCAGATAGTCAAGTTTATCCCAAAAATGCAGAAGACTCGGATAATAAATAA 4686 45.48 MEMPGRRLNYTLLSQIPDDQYSGGVAGASTTFKETSSGEGKNDRRKLERGLDWEAAGDHRAGQQQQVNWIGNMYSAFGLQRQSSGSSFGESSISGEYYAPTPSTTVANETDGFGCTHDDVLRIGGDSRAQMAEMAAGAGGSSAKTWAQQTEESYQLQLALALRLSSVATCADDPNFLNPFQDDSALRRSMSSVEAVSHRFWVNGCLSYFDKVPDGFYLIHGMDPYVWTVCTSLPDNDRMPSIESLKSVDPSTDSSIEVVLIDRRTDPNLKDLQNWVQGISCSSITTEEVVDQLAKLVCRSLGGSVSGEDALVSIWRECSDNLKETLGSVVIPLGGLSVGLCRHRALLFKVLADTIDLPCRVAKGCKYCSCHDSSSCLVQFGLDKEYLVDLIGNPGCLYEPDSLLNGPSSILISSPLRFPRLKPVEPAIDFRSLAKQYFSDCQLLNVVFDEASSCNHSEITVDGEDGALPLYLKQFDRKFTNRSNQMLVTGDSDEKSILLHAKTSQPNSQDRDFQLYKPRDNSHNFIQPTVQVEDSIPLKYGPHINRGSVQSLLDMSQPRMDSTMDLRFAPGGQLIPSTRSKTLPLGAEDLDIPWSDLVLKERIGAGSFGTVHRADWHGSEVAVKILTEQDFHPERVNEFLREVAIMKSLRHPNIVLFMGAVTKPPNLSIVTEYLSRGSLYRLLHKSGVKDIDETRRINMAFDVAKGMNYLHRRDPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKARTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWCNLNPAQVVAAVGFKGKRLDIPRDVNPKLASLIVACWADEPWKRPSFSTIMETLKPMTKQAPPQQGPVQSGRFQTKRTGPLKPYGQKDVKSEWLWPVSPNHNNGLPKHRSFCENDLINEGRFFFQYLPLLPFNLWRIQSPKLFGSVLMGSRHEQRHHCRATTRFTVTVSTAFEFLSPDFYPTPCRRKLLFCALIYTLLHLQKFIMKPIEEGDSVSPIEVSSSSAQSEFDAAGFSSDPELMLLPFSRPLMGSESFSPCGSFLEDTAAGLSMVSIGFSSSPSTGDFLAENPMPSSSAHHMFDVMHEPDKGALDPFVVPSMGSDVPRPLESLHGQFVPPFLWKTFDIVDDPALDPIVSWGSAGQSFVVWDPVEFSRVILPSNFKHNNFSSFVRQLNTYGFRKIDTDKWEFANEAFQRGKKHLLKNIQRRKSPHSQQIGSLIGPSSGGGKSGIEDEIGRLKKERRMLMQEVVELQQQQKGTAQQVTTVNRRLQSAEQRQKQMISFLAKLLRNPEFLFRLQKKKEQKDIDSLRTKRKFVKQHKHEADGFTPPMEGQIVRYQSDWESLARSSTALDLNPGLPEGTFAYLLEGVFGELGSIPESMPNFQFKNVSSSDVIASKELAFHHGIVNPTEELRRVEASNMSMEDQHFKGKSIESPPESNPDYFLSLTEDILPSSHQETESVIKPEEIWNAYLNVDAGSSGSSNELWSNPVGFEDPFLQVSSRLSTIWDLGSQQAGDSGTDKWSASGFPFDDPDSQVYPKNAEDSDNK 1561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32842805 32858765 - CcPI632755_10g019250.1 Cco10g1925 190883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1925 1561 MobiDBLite consensus disorder prediction 1524 1561 - -
Cco10g1925 1561 SMART serkin_6 597 854 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1925 1561 Coils Coil 1242 1269 - -
Cco10g1925 1561 SUPERFAMILY Winged helix DNA-binding domain 1129 1222 IPR036390 -
Cco10g1925 1561 SUPERFAMILY Protein kinase-like (PK-like) 579 850 IPR011009 -
Cco10g1925 1561 PRINTS Heat shock factor (HSF) domain signature 1133 1156 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g1925 1561 PRINTS Heat shock factor (HSF) domain signature 1184 1196 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g1925 1561 PRINTS Heat shock factor (HSF) domain signature 1171 1183 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g1925 1561 FunFam Serine/threonine-protein kinase CTR1 676 860 - -
Cco10g1925 1561 ProSitePatterns HSF-type DNA-binding domain signature. 1172 1196 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g1925 1561 CDD STKc_MAP3K-like 603 850 - -
Cco10g1925 1561 FunFam Serine/threonine-protein kinase isoform 1 587 675 - -
Cco10g1925 1561 Gene3D Transferase(Phosphotransferase) domain 1 676 862 - -
Cco10g1925 1561 Pfam HSF-type DNA-binding 1133 1222 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g1925 1561 Gene3D Phosphorylase Kinase; domain 1 590 675 - -
Cco10g1925 1561 PRINTS Tyrosine kinase catalytic domain signature 711 729 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g1925 1561 PRINTS Tyrosine kinase catalytic domain signature 777 799 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g1925 1561 PRINTS Tyrosine kinase catalytic domain signature 821 843 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g1925 1561 PRINTS Tyrosine kinase catalytic domain signature 671 684 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g1925 1561 ProSiteProfiles Protein kinase domain profile. 597 854 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1925 1561 Pfam Protein tyrosine and serine/threonine kinase 598 850 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g1925 1561 MobiDBLite consensus disorder prediction 1225 1246 - -
Cco10g1925 1561 Pfam Ethylene-responsive protein kinase Le-CTR1 193 397 - -
Cco10g1925 1561 ProSitePatterns Serine/Threonine protein kinases active-site signature. 717 729 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g1925 1561 MobiDBLite consensus disorder prediction 854 877 - -
Cco10g1925 1561 MobiDBLite consensus disorder prediction 854 872 - -
Cco10g1925 1561 ProSitePatterns Protein kinases ATP-binding region signature. 603 624 IPR017441 GO:0005524(InterPro)
Cco10g1925 1561 Gene3D - 1126 1223 IPR036388 -
Cco10g1925 1561 PANTHER SERINE-THREONINE PROTEIN KINASE 147 853 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cco10g1925 1561 SMART hsfneu3 1129 1222 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g1925 1561 FunFam Heat stress transcription factor B-4 1125 1223 - -
Cco10g1925 1561 MobiDBLite consensus disorder prediction 19 46 - -
Cco10g1925 1561 MobiDBLite consensus disorder prediction 19 36 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0570 Cco-Chr5:4630701 Cco10g1925 Cco-Chr10:32842805 1.20E-49 dispersed
Cco05g2022 Cco-Chr5:29324219 Cco10g1925 Cco-Chr10:32842805 1.50E-113 dispersed
Cco06g0455 Cco-Chr6:5014812 Cco10g1925 Cco-Chr10:32842805 5.00E-91 dispersed
Cco06g0947 Cco-Chr6:12564847 Cco10g1925 Cco-Chr10:32842805 1.90E-40 dispersed
Cco10g0148 Cco-Chr10:1415915 Cco10g1925 Cco-Chr10:32842805 6.00E-53 dispersed
Cco10g1566 Cco-Chr10:28871412 Cco10g1925 Cco-Chr10:32842805 1.70E-29 dispersed
Cco10g1925 Cco-Chr10:32842805 Cco11g1147 Cco-Chr11:22402226 2.10E-45 dispersed
Cco02g1907 Cco-Chr2:31947509 Cco10g1925 Cco-Chr10:32842805 4.60E-71 transposed
Cco11g1512 Cco-Chr11:27937166 Cco10g1925 Cco-Chr10:32842805 7.40E-175 transposed
Cco10g1925 Cco-Chr10:32842805 Cco04g1190 Cco-Chr4:27334546 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60175 PF07714 PK_Tyr_Ser-Thr 4.20E-70 CL0016 Cco TF
87174 PF07714 PK_Tyr_Ser-Thr 4.20E-70 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1925 K14510 - csv:101208452 1638.24