Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1936 ATGATGATGATGATGATGATGATGATGATGATGGGGAAGGGGAAGGGGAAGGGGAAGGTGGGGGTGAAGATTTTCAGTTCCGCCATAACTTTCTTTTTCACTCTTACCCTTTTGGTCTCTCCTTCTCTTTCTTCAGATGATTCTTCTGCTCTCACTCGCTTCCGTCTTCAAGCTGATTCCCATGGCGGTTTACTAAGAAATTGGACTGGTTCTGATGCTTGTGCTTCTTCATGGCGGGGAGTTCAGTGCTCTTTTAATGGCCGTGTTGTTGCTCTTTCTCTTCCTTCTATGAACTTACGAGGCCCCATTGAGTCTCTAGCGCCGCTCGATCAGCTTCGCCATCTTGACCTCCATGACAACCGTTTGAACGGAACCATTTCGCCGCTTGTTAACTGTACGAATCTTAAACTGTTGTATCTTTCCGGCAATGACTTCTCCGGCGAGATTCCGCCGGAGATCTCGTCTCTCAGGCGACTCCTCCGGCTGGATTTGTCCGATAACAACATCCGCGGTGGAATTCCTGAGGATATTTCTAAATTGTCTAGGCTCCTCACGTTACGTTTGCAGAACAATGTCCTCTCCGGTACGGTGCCTGATCTCTCTGTTTCGCTTGTGAACCTCACTGAACTTAATTTAACCAACAATGAACTGTACGGACGGTTGCCGGACGGGATGTTGAAGAAATTCGGTGAGAAGAGTTTCACTGGAAACGAAGGGGTTTGTGGATCGAGTCCGTTACCGATCTGTTCGGTTACTGGTTCACCGCCGACGTCGGATTCTAGCAGAACGGTACCTTCAAATCCAAGTTCATTGCCGCAAAACCCTATTATTAGTCCGAACAGTAAAGAATCTCGAAGAGGGCTCAGCCCTGGCGTGATTGTCGCGATTGTGATCGCGAATTGCGTTGCATTGCTTGTGATTATCTCGTTCATCGTCGCGTATTACTGCGCTCGTGATCGTGATCGGAGTTCGAGTTCCATGACCGGAAGCGAGAGCGGGAAGAGAAGGAAGAGCGGAAGTAGTTACGGAAGCGAGAAGAAAGTGTACGCCAATGGCGGTGGTGACAGTGATGGCACTAACGCGACAGACAGAAGCAAACTAGTGTTCTTCGATTGGAAGAAGCAATTCGAACTTGAAGATTTGCTGAGAGCGTCGGCGGAGATGCTCGGAAAAGGAAGCTTGGGGACGGTTTACCGTGCGGTTCTTGACGACGGTTGTACGGTGGCGGTGAAGAGGTTGAAAGATGCAAACCCATGTCCGAGGAAGGATTTTGAGCAGTATATGGATGTGATTGGGAAGCTGAAACATCCCAATATTGTGAGATTGAGAGCTTTTTACTATGCTAAAGAAGAAAAGCTTCTGGTTTATGATTATCTTCCTAATGGGAGTCTACATTCTCTTCTCCATGGAAATCGAGGCCCAGGGAGGATTCCATTGGATTGGACGACCAGGATCAGTTTAGTTCTGGGAGCTGCTCGTGGCTTAGCAAGAATCCATGGAGAATACAGTGCTTCAAAGATTCCTCATGGGAATGTCAAATCTTCCAATGTTCTTCTTGACAAAAATGGAGTTGCTTGCATTTCTGATTTTGGGTTATCTTTGCTTCTCAACCCAGTCCATGCCATTGCAAGGTTGGGAGGCTACAAGGCCCCGGAACAAGACGAGACTAAACGTCTCTCTCAAAAAGCAGATGTTTATAGCTTTGGAGTCTTATTGCTCGAAGTCTTAACAGGACGTGCACCGTCGCTCTACCCATCACCTTCGAACCCAAGAAGCGACGACGAAGAGCAGCCAGTGGACCTCCCGAAATGGGTTCGATCCGTGGTGAAGGAAGAGTGGACAGCTGAGGTTTTTGATCCAGAGCTATTAAGGTACAAGAACATAGAGGAGGAGCTTGTGTCTATGCTTCATGTTGGGTTGGCTTGTGTTCTTCCTCAGCCTGAGAAGAGACCAACAATGGCGGAAGTGGCGAAGATGATCGAAGATATTAGGGTCGAGCAATCCCCGCTCGGAGAAGATTACGACGAATCACGCAATTCGCTTTCGCCTTCCCTAGCCACCACAGAAGATGGTATGTAG 2079 48.2 MMMMMMMMMMMGKGKGKGKVGVKIFSSAITFFFTLTLLVSPSLSSDDSSALTRFRLQADSHGGLLRNWTGSDACASSWRGVQCSFNGRVVALSLPSMNLRGPIESLAPLDQLRHLDLHDNRLNGTISPLVNCTNLKLLYLSGNDFSGEIPPEISSLRRLLRLDLSDNNIRGGIPEDISKLSRLLTLRLQNNVLSGTVPDLSVSLVNLTELNLTNNELYGRLPDGMLKKFGEKSFTGNEGVCGSSPLPICSVTGSPPTSDSSRTVPSNPSSLPQNPIISPNSKESRRGLSPGVIVAIVIANCVALLVIISFIVAYYCARDRDRSSSSMTGSESGKRRKSGSSYGSEKKVYANGGGDSDGTNATDRSKLVFFDWKKQFELEDLLRASAEMLGKGSLGTVYRAVLDDGCTVAVKRLKDANPCPRKDFEQYMDVIGKLKHPNIVRLRAFYYAKEEKLLVYDYLPNGSLHSLLHGNRGPGRIPLDWTTRISLVLGAARGLARIHGEYSASKIPHGNVKSSNVLLDKNGVACISDFGLSLLLNPVHAIARLGGYKAPEQDETKRLSQKADVYSFGVLLLEVLTGRAPSLYPSPSNPRSDDEEQPVDLPKWVRSVVKEEWTAEVFDPELLRYKNIEEELVSMLHVGLACVLPQPEKRPTMAEVAKMIEDIRVEQSPLGEDYDESRNSLSPSLATTEDGM 692
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32933408 32935592 + CcPI632755_10g019360.1 Cco10g1936 190894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1936 692 MobiDBLite consensus disorder prediction 674 692 - -
Cco10g1936 692 Gene3D Ribonuclease Inhibitor 162 249 IPR032675 -
Cco10g1936 692 Gene3D Transferase(Phosphotransferase) domain 1 459 681 - -
Cco10g1936 692 MobiDBLite consensus disorder prediction 322 357 - -
Cco10g1936 692 MobiDBLite consensus disorder prediction 322 337 - -
Cco10g1936 692 Gene3D Phosphorylase Kinase; domain 1 356 458 - -
Cco10g1936 692 Pfam Leucine rich repeat N-terminal domain 45 84 IPR013210 -
Cco10g1936 692 ProSiteProfiles Leucine-rich repeat profile. 111 133 IPR001611 GO:0005515(InterPro)
Cco10g1936 692 SUPERFAMILY L domain-like 45 225 - -
Cco10g1936 692 PANTHER OS05G0588300 PROTEIN 30 669 IPR050994 -
Cco10g1936 692 FunFam pollen receptor-like kinase 1 354 458 - -
Cco10g1936 692 MobiDBLite consensus disorder prediction 251 285 - -
Cco10g1936 692 FunFam Nuclear pore complex protein NUP107 44 199 - -
Cco10g1936 692 ProSiteProfiles Protein kinase domain profile. 383 665 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1936 692 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 459 672 - -
Cco10g1936 692 Pfam Leucine Rich repeats (2 copies) 111 146 IPR025875 -
Cco10g1936 692 Gene3D Ribonuclease Inhibitor 46 158 IPR032675 -
Cco10g1936 692 Pfam Protein tyrosine and serine/threonine kinase 387 658 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g1936 692 MobiDBLite consensus disorder prediction 251 286 - -
Cco10g1936 692 SUPERFAMILY Protein kinase-like (PK-like) 387 660 IPR011009 -
Cco10g1936 692 MobiDBLite consensus disorder prediction 667 692 - -
Cco10g1936 692 SMART LRR_typ_2 204 228 IPR003591 -
Cco10g1936 692 SMART LRR_typ_2 156 180 IPR003591 -
Cco10g1936 692 SMART LRR_typ_2 109 133 IPR003591 -
Cco10g1936 692 Pfam Leucine Rich Repeat 159 180 IPR001611 GO:0005515(InterPro)
Cco10g1936 692 Pfam Leucine Rich Repeat 206 224 IPR001611 GO:0005515(InterPro)
Cco10g1936 692 CDD STKc_IRAK 389 663 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1455 Cco-Chr4:29990859 Cco10g1936 Cco-Chr10:32933408 1.40E-70 dispersed
Cco05g2510 Cco-Chr5:33458521 Cco10g1936 Cco-Chr10:32933408 2.30E-63 dispersed
Cco06g1212 Cco-Chr6:21728731 Cco10g1936 Cco-Chr10:32933408 6.50E-92 dispersed
Cco10g1936 Cco-Chr10:32933408 Cco11g0287 Cco-Chr11:2900088 9.40E-94 dispersed
Cco02g2437 Cco-Chr2:36745375 Cco10g1936 Cco-Chr10:32933408 1.70E-08 transposed
Cco10g1936 Cco-Chr10:32933408 Cco11g1783 Cco-Chr11:30552622 4.40E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87175 PF00069 Pkinase 3.30E-33 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1936 - - - 0.0