Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco10g1942 | ATGGCTTCGTCGAAGGAAATGAAGAAGGAGAGAGCAGAGGCGGCGGCAAGGCTTGCTGCTTCCGATCTCAGAGACGTTAACAGAGAAGAGGAGCAGCAGGCGGCGGCGCCAAAAACCGAGAGAAAAGCCGCGGTGGAGGTCGTGGAGGCGGACCGGTCGACGGTGCAAGATCAGCAGCAGAGGTCCGGCGTGATTGGATCAGTACTGAAGGCAGTGCAGGACACGTACGAACACGCGAAGGAAGCGGTGGTCGGAAAGAGCCACGAAGTGGAGGAGAAAGGCCGAGAAGTAAAGGACACGTCTGCGGAGAAGGCAAGAGAGACGACCGATGCGGCAGGGAGGAAAATGGACGAGTACAGAAGTGCTGCGGCGGAGAAGGCGAGGGAGACGAAGGAAGCTGCTGGAGAGACGGCAGCCTCAGCAAGGGGAAAAATGAGCGAATATGGAGAGAAAACGAGGGATAAAACTGGCGAATATAAGGATTACACGGCGGAGAAGGCAAGGGAGACTAAGGATTCAGCTGCGAGAAAAGCAGGGGAATACAAAGATTACACGGCCGAGAAGACGTCGGAGGCTAAAGGAAAGGCTGGCGAGTACAAGGATTATGCAGCAGAGAAGGCGAAGGAAGCGAAGGACGCTGCAGCAAGAAAAGCAGGGGAATACAAAGATTATACCGCCGAGAAGGCGAGGGAAGCGACAGAATCGGCGAAGGGGAAGGCCGGAGAGTACAAGGATTACGCGGCAGAGAAGGCTAATCAAGCGAAGGAGAAGGCGGTGGAGTATAAGGACTACACGGCGGATAAGGCGAAGGAGACGAAGGATGCGGCAGCGAGAAAAACAGGGGAATACAGAGACTACGCGGCGGAGAAAGCGAGAGAGACGACGGATTACACAGCGGAGAAGGCAAAAGAAGGGAAAGACACGACGGTGAGCAAACTTGGGGAATTGAAAGATTCAGCGGCCGATGCTGCAAAGAGAGCTATGGAATATTTTTCTGGAAAGAAAGAGGAAGCCAAGGAGAAGGCATACGAGACAAAAGAAGTCGCAGAGGAAAAGATGGGGGAATCAGAGGAGGATACAAGGAGGAGGATGGAGGATCTCAGGCTGCAGGGAGAAGGAAGGAGGGGCAGCAGAGAAGAAGCAAAAGTGACACTCGAACGTAATAGGGGCGGTGGTGGCGCGGTGGTAGTAGGTCTGGAGGAGTCACGGCCGGGGGCGTTGGCCTCGACTTTGAAGCAAGCAGACGACATGGCTGGGCAGACGTTCAACGACGTGGGTCGAATGGACGATGAGGAGAATCGGTACAGTAGTTGTTGCTTAGTCTGGACCTTTGGTTCTCTGCTTTATCCAGGTTTCATCAATAACGCGGCAGGAGCTAAGCATCCCCAGCGGCCATGGTTCTCAAGTTCGTCAAATCTTTCATCTCTGTCTCTTATCCTGTTAGATCTGATTGCCATTTTGATTGCATATACTCTGACTGAACTTTGTCGATTCAGTGGTGCCAAGATATACCCAGGGAAAGGCATCAGATTTGTCCGGGGTGATTCTCAGGTGTTTCTCTTTGCCAACTCAAAATGCAAGAGGTACTTCCACAACCGGCTGAAGCCTTCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCATAAGAAGGATATTGCTCAAGAGGCTGTGAAGAAGAGGAGACGTACCACCAGGAAGCCCTACTCTAGGTCCATTGTTGGTGCAACTTTGGAAGTAATCCAGAAAAAGAGAGCTGAAAAGCCAGAAGTGCGTGATGCTGCTAGAGAAGCTGCTCTACGGGAAATTAAGGAAAGGATTAAGAAAACCAAGGACGAGAAGAAAGCCAAGAAGGCAGAAGTGTTGGCCAAGTCACAGAAGGCGCCAGGTAAGGGTAATGTTGCCAAGGGACCTGCATCCAAGGGTCCAAAGCTCGGTGGTGGTGGCGGAAAGCGTTGA | 1959 | 52.53 | MASSKEMKKERAEAAARLAASDLRDVNREEEQQAAAPKTERKAAVEVVEADRSTVQDQQQRSGVIGSVLKAVQDTYEHAKEAVVGKSHEVEEKGREVKDTSAEKARETTDAAGRKMDEYRSAAAEKARETKEAAGETAASARGKMSEYGEKTRDKTGEYKDYTAEKARETKDSAARKAGEYKDYTAEKTSEAKGKAGEYKDYAAEKAKEAKDAAARKAGEYKDYTAEKAREATESAKGKAGEYKDYAAEKANQAKEKAVEYKDYTADKAKETKDAAARKTGEYRDYAAEKARETTDYTAEKAKEGKDTTVSKLGELKDSAADAAKRAMEYFSGKKEEAKEKAYETKEVAEEKMGESEEDTRRRMEDLRLQGEGRRGSREEAKVTLERNRGGGGAVVVGLEESRPGALASTLKQADDMAGQTFNDVGRMDDEENRYSSCCLVWTFGSLLYPGFINNAAGAKHPQRPWFSSSSNLSSLSLILLDLIAILIAYTLTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRTTRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR | 652 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 32976800 | 32982348 | - | CcPI632755_10g019420.1 | Cco10g1942 | 190900 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco10g1942 | 652 | MobiDBLite | consensus disorder prediction | 606 | 652 | - | - | |
| Cco10g1942 | 652 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 494 | 546 | - | - | |
| Cco10g1942 | 652 | MobiDBLite | consensus disorder prediction | 606 | 624 | - | - | |
| Cco10g1942 | 652 | SMART | 4TRASH | 496 | 534 | IPR011017 | - | |
| Cco10g1942 | 652 | FunFam | 60S ribosomal protein L24 | 491 | 552 | - | - | |
| Cco10g1942 | 652 | CDD | Ribosomal_L24e_L24 | 493 | 544 | IPR000988 | - | |
| Cco10g1942 | 652 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
| Cco10g1942 | 652 | MobiDBLite | consensus disorder prediction | 83 | 135 | - | - | |
| Cco10g1942 | 652 | ProSitePatterns | Ribosomal protein L24e signature. | 498 | 515 | IPR023442 | - | |
| Cco10g1942 | 652 | MobiDBLite | consensus disorder prediction | 146 | 177 | - | - | |
| Cco10g1942 | 652 | MobiDBLite | consensus disorder prediction | 83 | 177 | - | - | |
| Cco10g1942 | 652 | Pfam | Ribosomal protein L24e | 493 | 555 | IPR000988 | - | |
| Cco10g1942 | 652 | PANTHER | LATE EMBRYOGENESIS ABUNDANT DOMAIN-CONTAINING PROTEIN / LEA DOMAIN-CONTAINING PROTEIN | 91 | 193 | - | - | |
| Cco10g1942 | 652 | Gene3D | - | 94 | 149 | - | - | |
| Cco10g1942 | 652 | Gene3D | - | 150 | 196 | - | - | |
| Cco10g1942 | 652 | Gene3D | - | 197 | 252 | - | - | |
| Cco10g1942 | 652 | Gene3D | - | 281 | 337 | - | - | |
| Cco10g1942 | 652 | MobiDBLite | consensus disorder prediction | 335 | 362 | - | - | |
| Cco10g1942 | 652 | Gene3D | Ribosomal protein L24e | 492 | 552 | IPR038630 | - | |
| Cco10g1942 | 652 | Coils | Coil | 9 | 29 | - | - | |
| Cco10g1942 | 652 | SUPERFAMILY | Apolipoprotein A-I | 57 | 261 | - | - | |
| Cco10g1942 | 652 | Coils | Coil | 339 | 359 | - | - | |
| Cco10g1942 | 652 | Coils | Coil | 600 | 624 | - | - | |
| Cco10g1942 | 652 | Gene3D | - | 558 | 625 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco10g1942 | Cco-Chr10:32976800 | Cco04g1176 | Cco-Chr4:27168853 | 6.40E-68 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco10g1942 | - | - | - | 0.0 |