Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1943 ATGTCGAAGCATAAATTTTCTCAACTACTGGACCTCCGGCGCCGGAGATATTGCCGGTGCTTATCGTCTTCCGTCGTCAAAGTGACAGGTGCCTTATGGCGTAACTCTGAACAAGATCACTCATCAAGGAAACAAGCTTGCGACGGATTTTTCATCATCGGCATCAGAGCAGGAATCTTTATATCAAAGCACTCGTCGTTGACGAGAGGCGAATGTGGATTTGAGCTCTGTTCCAACAATTGTCAGACGTCCATGGACAAAGCTTCCAAGCATCAGGTATCATTGAGGGGAGCGAGTGCAAAAGAAATTACGAGGGATGCTCTTGTTCAGAAGGTTATCCAGGAGAGAGAGCTACGTCAATATGCAAGAAAAGCGGCAGCTGCGTCTCTCTTTATTCAGAGAGTTTGGAGGCGCTTCAGAGCGACTAAGATAGCTGCTTTGCAGCTTCAAGAAGAATGGGAGGAGTTGGTGAATAATCATTCTGGTGCACGGGGTGGCACATTCATTTCCTATAATATTTTGAGACCATTTCTCTTCTTTATCTCGTCATTTCTGAAACGACCTCAAAATATCAAGACCAAAGATATAGCCTGTATGAAGAATTGCTTTAAAATCTTGTTTGAAAGCATAAATTCTACTGAATCAAAGAACAACTTTTGCTCTTTGGCCACTGGTACATCTGAAGGAAGAAGAATATGGACTTACCAATCAAGGAAGCTTATTTCTGTATGCTTATTTATTCTTGTGCATTTTGACAAGATGCAAGTGAAGGAGCAAGAAATTGTTGTTACGACCTCTATGGCCATGCGCCTTATAGTTGTCTTAACTGATCATCATGGGTGGAAGAGTGTTAATGAGAACAGTCGTGCTGTTGCTGATGCAGCCGTGAAGGATTTAGTTCATTATTTGGGAACTTTTGAAAGTGGTCTTTACGTATCAGTCAGGCAATACATGTATAAATTAAGTGTCCTCCAGTCTACGCAGACCAACAGTACCATCCAGGCAAATGATTTATTAGTCACTTCTGTGAGTGCAATAACTTTAGCATTACGACCATTTCATTTAATGAATTTTGATACGATTGGTACTACTTCGTGGGAAGGGCATCATGTTGCTGAACAGTTTTGCTTGTATCTACTGACAATTCCCGGGCTTGTTCAAAATCTGCCACAAGTTCTTGTGCCAGCTGTCAAGCATCAATCTATCTTGCTACCATGCTTCTGGACTCTATTGGCCAAGAAAGAGACAATTTTGTTGGGGATGTCGGACATGGATCAGTTATCAGTTGAATGTGGCTCTAAGGTTGTTCCGGCAGTTGGATGGGCTCTTGCTAACATTATATGTTTAGTAGCTGGGAGTGAAACTAAAGCAAGGGATTCCGGTTGGTTCAGTCAGAGTTTAGACTATGTGTTGTATGTTCGTGTGGTTGTCACTTTGGCAGAAAGCTTTTTGGCTTTGAATGGGGATTTAGGATGTGGTAAAAAGGAGAACCAAGATATCCAGAGCGACAATGTAACTTCATATGAACCCTCTGATGCAGCTGTTCTCAAGAATGAAATGTCATCTATGTCCTTAAGCACATCCTTCATCGATATGTTTAGGCCTATTTGTGAACAGAGGCATCTCACAGATCTTTTGAAAATGGTAAATACAAATGTTTATTCTGAAAGTAGCACTGCACAATCAAATAATATGGAATGTATGAAAAGCTTGAAACTGCTTGATATATCATACTTCTACATGTACATGCTCAGAATATTTTCATTATTGAATCCGTCGGTCGGATCCTTACCTATTCTTAATATGTTATCTTTTACTCCTGGATTTCTTGTTGATCTGTGGGGAGTGTTAGAAAGTTCCTTTTTCCCCAATGTTGCTGATGAAGCCGATGATCACTTTCCTGGCTCAAGTAAGATATCGAGTAAAAGAAAAGATGAAGTTTTTGGCAAAAAGCAAAACCAAGTCAGTAAGGATGGAAGTAGTAGGTGGGTAACTGTCTTCCATAAATTCACGAGCAAGTCACAACCGGGTAGTGATCATATGGACACAATTGAAGTTCAATCTAGTTCAAGACAGGGGGATGACAACTTATGCGATTTATGGGACATAAAATCTTTGAGTTGTGGTCCACAAGGTATTTCAAAAGATTTGTCATGTCTGCTCTATCTTTTCAGTGCCACTTATGCTCATCTGCTGTTAGTTCTAGATGACATAGAGTTCTATGAAAAACAGGTTCCATTCAGGCTGGGGCAGCAAAGGAAACTTGCATCAACGCTTAACACGCTTGTGTATAATGGCTTGTCCCATGGTACTGGTCAGCAAAACACATCCCTTATGGAATCTGCAATCAGGTGCTTGCACCTGCTGTATGAGAGGGATTGCAGACATCAGTTTTGTCCTCCTACCCTGTGGCTTTCACCTGCTAGAACAAGTAGACCACCTGTTGCAGTTGCTGCAAGAACTCACGAAGCTTTATCAGCTAACTTACGGGCAGATGATACTTTAACAGTTCCAAGTGTAGGATCAATTATTACTACCACACCACATGTGTTCCCATTTGAGGAAAGAGTTGAAATGTTTAGAGAGTTTGTCAAGATGGACAAAGTCTCCCGAAAAATGGCAGGTGAAGTTGGTGGACCTGGGTCACGATCATTTGAAATTGTAGTTCGTCGTAGCCATGTTGTTGAAGATGGGTTCAGACAGTTAAATTCTCTCGGGTCAAGGCTGAAATCAGCTATCCATGTTTCTTTTGTTAGTGAATGTGGCCTTCCTGAGGCTGGCCAAGACTGTGGTGGATTATCCAAAGAGTTTTTGACTGATATAGCCAAAGCAGCATTTTCACCTGAATATGGACTATTCTCTCAAACCTCTACTCCAGACAGGCATCTTATCCCTAATGCATCTGCACGATATCTCGACAATGGTATCCAGATGATCGAGTTTCTTGGTAGAGTTGTTGGGAAGGCTCTCTATGAAGGAATATTGCTTGACTACTCATTTTCGCATACTTTTGTCCACAAGCTTTTAGGCCGGTATAGCTTCCTTGATGAGCTATCAACACTTGATCCTGAGCTCTACAAGAATCTCATGTATGTCAAGTCTTATGAGGGTGATGTCAAAGAACTCTCGCTGGATTTCACTGTAACCGAAGAATCATTTGGCAAACGACATGTTATTGAGCTTAAACATGGTGGCAAGGATATTTCTGTTACAAATGAGAATAAGATGCAGTATGTTCACACCATCGCTGATTATAAACTTAATCGACAGATATTGCCTTTTTCAAACGCGTTTTATAGGGGTTTAACTGATCTTATATCACCATCTTGGTTGAAGTTATTTAATGCAAGTGAATTCAATCAGTTGCTTTCAGGTGGAAAACATGATATTGATGTTGATGATTTGAGGAAGAATACACGATATACAGGTGGTTACACAGAGGGCAGCCGAACAGTTAGTATTTTCTGGGAGGTTATGAAAGGATTTGAACCAAAAGATCGTTGTTTGCTTCTTAAATTTGTCACCAGTTGTTCTCGAGCTCCATTACTTGGATTCAAATACCTGCAACCAGCTTTTACCATCCATAAGGTTTCGTGTGACGTACCTATATGGGCTTCAATAGGAGGACAGGATGTCGAGCGGCTTCCAACTGCTTCCACTTGCTATAATACTCTCAAGGATTTGAACTTTCTTAATGTAACTGAGATCAGCCTGGCAGCTGATTGGTCCAAAGCTACATCTAATTATTCACAGTCGGTGCATAATGTGATTGGTAATCCTTCTTATTTACGAGTCTGTGGCACATTAAAGGCGGCTGTTCTTTGA 3825 41.05 MSKHKFSQLLDLRRRRYCRCLSSSVVKVTGALWRNSEQDHSSRKQACDGFFIIGIRAGIFISKHSSLTRGECGFELCSNNCQTSMDKASKHQVSLRGASAKEITRDALVQKVIQERELRQYARKAAAASLFIQRVWRRFRATKIAALQLQEEWEELVNNHSGARGGTFISYNILRPFLFFISSFLKRPQNIKTKDIACMKNCFKILFESINSTESKNNFCSLATGTSEGRRIWTYQSRKLISVCLFILVHFDKMQVKEQEIVVTTSMAMRLIVVLTDHHGWKSVNENSRAVADAAVKDLVHYLGTFESGLYVSVRQYMYKLSVLQSTQTNSTIQANDLLVTSVSAITLALRPFHLMNFDTIGTTSWEGHHVAEQFCLYLLTIPGLVQNLPQVLVPAVKHQSILLPCFWTLLAKKETILLGMSDMDQLSVECGSKVVPAVGWALANIICLVAGSETKARDSGWFSQSLDYVLYVRVVVTLAESFLALNGDLGCGKKENQDIQSDNVTSYEPSDAAVLKNEMSSMSLSTSFIDMFRPICEQRHLTDLLKMVNTNVYSESSTAQSNNMECMKSLKLLDISYFYMYMLRIFSLLNPSVGSLPILNMLSFTPGFLVDLWGVLESSFFPNVADEADDHFPGSSKISSKRKDEVFGKKQNQVSKDGSSRWVTVFHKFTSKSQPGSDHMDTIEVQSSSRQGDDNLCDLWDIKSLSCGPQGISKDLSCLLYLFSATYAHLLLVLDDIEFYEKQVPFRLGQQRKLASTLNTLVYNGLSHGTGQQNTSLMESAIRCLHLLYERDCRHQFCPPTLWLSPARTSRPPVAVAARTHEALSANLRADDTLTVPSVGSIITTTPHVFPFEERVEMFREFVKMDKVSRKMAGEVGGPGSRSFEIVVRRSHVVEDGFRQLNSLGSRLKSAIHVSFVSECGLPEAGQDCGGLSKEFLTDIAKAAFSPEYGLFSQTSTPDRHLIPNASARYLDNGIQMIEFLGRVVGKALYEGILLDYSFSHTFVHKLLGRYSFLDELSTLDPELYKNLMYVKSYEGDVKELSLDFTVTEESFGKRHVIELKHGGKDISVTNENKMQYVHTIADYKLNRQILPFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGKHDIDVDDLRKNTRYTGGYTEGSRTVSIFWEVMKGFEPKDRCLLLKFVTSCSRAPLLGFKYLQPAFTIHKVSCDVPIWASIGGQDVERLPTASTCYNTLKDLNFLNVTEISLAADWSKATSNYSQSVHNVIGNPSYLRVCGTLKAAVL 1274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32986393 33003812 + CcPI632755_10g019430.1 Cco10g1943 190901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1943 1274 FunFam Putative Ubiquitin-protein ligase E3C 1011 1090 - -
Cco10g1943 1274 Gene3D Hect, E3 ligase catalytic domains 887 1125 - -
Cco10g1943 1274 ProSiteProfiles HECT domain profile. 909 1226 IPR000569 GO:0004842(InterPro)
Cco10g1943 1274 Gene3D Hect, E3 ligase catalytic domain 1128 1232 - -
Cco10g1943 1274 CDD HECTc 885 1226 IPR000569 GO:0004842(InterPro)
Cco10g1943 1274 Gene3D Hect, E3 ligase catalytic domain 1011 1090 - -
Cco10g1943 1274 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 86 1226 IPR044611 GO:0000209(InterPro)|GO:0000209(PANTHER)|GO:0006511(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)
Cco10g1943 1274 SMART hect_3 903 1252 IPR000569 GO:0004842(InterPro)
Cco10g1943 1274 Pfam HECT-domain (ubiquitin-transferase) 940 1226 IPR000569 GO:0004842(InterPro)
Cco10g1943 1274 SUPERFAMILY Hect, E3 ligase catalytic domain 884 1226 IPR035983 GO:0004842(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0436 Cco-Chr6:4792647 Cco10g1943 Cco-Chr10:32986393 8.50E-83 dispersed
Cco10g0427 Cco-Chr10:5027543 Cco10g1943 Cco-Chr10:32986393 3.10E-50 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1943 K10588 - csv:101205886 2074.67