Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1945 ATGGAGCTTTTCCTTCTTCTTCCTTCCTACAAACAAAACCCCACGATTTTCCATAAGCCCCTTAATCCCTTCGCCATTATCGGAAAGAGACGGCCATCTCTTTTTCCTTGTCGATGCTCCTTATCGTCTTCCCAAGAAGAATCTTCAGAACAAGCTAAAGAATCGCTGCGGTGTGAGGGAAGAAGGGCATTGATTGGTTCTTTCCTGTCGACGGCTGCTGGCATATATTTCTGCAATGTGGCCGAGGCTGTTAGCACAAGTAGAAGGGCTCTAAGAGGAGCAAAAATACCTGAAAGTGAGTTTACAACTCTCCCAAATGGTCTGAAGTACTATGACTTGAAGGTTGGAGGAGGAACTAAGGCTGTGATTGGATCCCGTGTTGCAACAACCAATGAGCATTCTGATGGAATCCATACTGGTCCTGAGAAAATTACTCTGGTTCACTATGTGGCTAAATGGAGAGGGATCACCTTTATGACAAGTAGACAAGGGCTTGGTGTTGGTGGAGGAACGCCTTATGGATTTGATGTAGGCCAATCAGAAAGAGGAACGGTCCTCAAGGGATTGGATCTAGGTGTTCAAGGCATGAGGGTGGGAGGCCAGAGATTGCTTATAGTTCCTCCTGAGTTAGCTTACGGAAGCAAAGGGGTTCAAGAAATTCCTCCAAATGCAACAATAGAGTTGGATGTGGAATTGCTAGCCATCAAGCAAAGTCCATTTGGGTCTCCAGTAAAGATTGTTGAAGAAGAATGGATGAAAATTTTCGAGGAATTGGAAGCCATTTCTGGAAGCAGCTTGCCTTATGGGAACAACGCATCTAGAAAAACTTCCTTTATTGTGACCATTCAAGAGGAATCCACCAGTCTGTATAAAGCCAAAACATCTTATACAGATTCTTTCTTCCACCTTTTCCATGCTCATAAAACCTGCCCAAGCTGTGGCCTCTTTGAAGTTCCTTATCCTTTGAGTACCAATCCCAACTGTGGTGACTTAGACTATGCACTTCGTTGTGATTCTCATTCACAGAAACTCTACTTCGATGCACTCAATGGAAGTTCATATCCTATCCTCAAAATCAACGCTTCGAGTCAACGTTTGGTGATCCAACCATCTCCATGGGTTGCTGGCTCTTGTATTACTCAAGACATGTTGGTTAGTGAAGGCCTGTGGTTAAACCAATCACTCCCTTTTAACATCACTTCATCAAATACAATTTTTCTCTTGAACTGTTCTCCTCGCCTGCTGGTTTCACCACTCAATTGCACTCCTTCGAGTCTCTGTCACCACTACTTGGCAAGTTCAGGACGAGTCGATGAAAAAAAAGCATTTCAGTGTGCAAGTGTTCTTGACCCTTGTTGTACCTTCATCGCTGGTGGGATGCCCTCAGCTTATAAGATAAGGCTTCATAACTCAGGCTGTAGAGCACTCAGGAGTATCCTCCATCTGGATGTAGAAAAGCCTGCAAATCAATGGGAGGAAGGTTTGGAAATTCAATGGGCTCCTCCACCTGAACCAATCTGTAGAACTCAATCTGATTGCACTGGAGCATCGGATTGTCTTCCTGCGGGTGGTTCAAACAGTCGTTCTCGTTGCCTTTGTAGAAGGAGCTACTACTGGAATCATATTTTTGGAACATGCCTGAGAACAAATAGGAAGAGCATGGTTAGACTGAGCATAAAGCTGTCGGTGTGTCTCGTTTCCTTTTTCATTCTAGCTGCAGTCATAGCTCTAATTACAGTCAGGAAGTCCAGAACTTTCAGTAAACAGGAAAAGCTATGTAAAGAAAGAGAGGATATGTTGAATTTAAGCCATGGCGTTAGACCAGCTAGGATGTTTCATCTGAAAGAGATGAAGAAAGCAACAAATGAATTTTCGAAAGACAGAGTCCTAGGCAGTGGTGGCTTTGGAGAGGTTTATAAAGGTGAACTTCAAGATGGGACTATCGTAGCCGTGAAGTCGGCCAAAGTGGGTAATCTAAAGAGCACCGAACAAATACTCAACGAAGTCGGAATACTATCTCAAGTAAATCATAGGAATCTTGTGAAACTTATAGGTTGCTGTGTAGAAACTGAGCAACCATTGATGATATATGAATACATTTCCAATGGCACCCTCCATGACCATTTACATGGTAAGATTCCTTCTTTCTTGGATTGGAGAAAAAGGCTGAAAATTGCTTCACAAACTGCTGAAGCATTAGCTTATCTGCATTCAGCTGCATATCCTCCCATCTATCATAGAGATGTCAAGTCAACAAATATTCTTTTAGATGATAAATTCAATGCTAAAGTCTCAGATTTTGGACTTTCTAGATTGGCTTTGCCAGGAATAAGCCATGTTTCAACTTGTGCACAGGGTACATTAGGTTACCTAGACCCAGAATACTATCGAAACTACCAATTAACGGATAAAAGTGATGTGTATAGTTTTGGAGTTGTTCTACTCGAGCTTTTAACCTCTCAGAAGGCCATAGATTTCACAAGAGATGAAAATTGTGTCAATCTAGCGATCTATGTGATCCAACAAGTGCAAAATGGTGCATTCATTGACGTCATCGATAAACAGCTTATCAGTGACGATCCATCCAGCAATATACTAATCAGTGTGAAGCACTTCTTGGAGCTCGCACTCGCCTGTTTGAGGGAGAAGAAAGTGGAAAGGCCTTTCATGAAGGATGTACTCCAAGAACTTGAATACATAACTCAGATATTGGACAATCCAGAAACAGTTGCTGAAGAAGGTAAGTCTTAA 2751 42.46 MELFLLLPSYKQNPTIFHKPLNPFAIIGKRRPSLFPCRCSLSSSQEESSEQAKESLRCEGRRALIGSFLSTAAGIYFCNVAEAVSTSRRALRGAKIPESEFTTLPNGLKYYDLKVGGGTKAVIGSRVATTNEHSDGIHTGPEKITLVHYVAKWRGITFMTSRQGLGVGGGTPYGFDVGQSERGTVLKGLDLGVQGMRVGGQRLLIVPPELAYGSKGVQEIPPNATIELDVELLAIKQSPFGSPVKIVEEEWMKIFEELEAISGSSLPYGNNASRKTSFIVTIQEESTSLYKAKTSYTDSFFHLFHAHKTCPSCGLFEVPYPLSTNPNCGDLDYALRCDSHSQKLYFDALNGSSYPILKINASSQRLVIQPSPWVAGSCITQDMLVSEGLWLNQSLPFNITSSNTIFLLNCSPRLLVSPLNCTPSSLCHHYLASSGRVDEKKAFQCASVLDPCCTFIAGGMPSAYKIRLHNSGCRALRSILHLDVEKPANQWEEGLEIQWAPPPEPICRTQSDCTGASDCLPAGGSNSRSRCLCRRSYYWNHIFGTCLRTNRKSMVRLSIKLSVCLVSFFILAAVIALITVRKSRTFSKQEKLCKEREDMLNLSHGVRPARMFHLKEMKKATNEFSKDRVLGSGGFGEVYKGELQDGTIVAVKSAKVGNLKSTEQILNEVGILSQVNHRNLVKLIGCCVETEQPLMIYEYISNGTLHDHLHGKIPSFLDWRKRLKIASQTAEALAYLHSAAYPPIYHRDVKSTNILLDDKFNAKVSDFGLSRLALPGISHVSTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTSQKAIDFTRDENCVNLAIYVIQQVQNGAFIDVIDKQLISDDPSSNILISVKHFLELALACLREKKVERPFMKDVLQELEYITQILDNPETVAEEGKS 916
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33008027 33014541 + CcPI632755_10g019450.1 Cco10g1945 190903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1945 916 Pfam Wall-associated receptor kinase galacturonan-binding 310 368 IPR025287 GO:0030247(InterPro)
Cco10g1945 916 ProSitePatterns Protein kinases ATP-binding region signature. 630 652 IPR017441 GO:0005524(InterPro)
Cco10g1945 916 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 305 901 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Cco10g1945 916 ProSitePatterns Serine/Threonine protein kinases active-site signature. 744 756 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g1945 916 SUPERFAMILY FKBP-like 94 236 - -
Cco10g1945 916 Gene3D Transferase(Phosphotransferase) domain 1 700 912 - -
Cco10g1945 916 Gene3D Phosphorylase Kinase; domain 1 594 699 - -
Cco10g1945 916 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 598 699 - -
Cco10g1945 916 Pfam Protein tyrosine and serine/threonine kinase 626 897 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g1945 916 SMART serkin_6 624 900 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1945 916 FunFam Wall-associated receptor kinase-like 20 700 910 - -
Cco10g1945 916 ProSiteProfiles Protein kinase domain profile. 624 900 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1945 916 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 142 236 IPR001179 GO:0003755(InterPro)
Cco10g1945 916 CDD STKc_IRAK 630 898 - -
Cco10g1945 916 Gene3D - 80 245 IPR046357 GO:0003755(InterPro)
Cco10g1945 916 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 145 233 IPR001179 GO:0003755(InterPro)
Cco10g1945 916 SUPERFAMILY Protein kinase-like (PK-like) 600 901 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1644 Cco-Chr2:29030703 Cco10g1945 Cco-Chr10:33008027 1.80E-32 dispersed
Cco04g0984 Cco-Chr4:25434282 Cco10g1945 Cco-Chr10:33008027 1.40E-149 dispersed
Cco05g0897 Cco-Chr5:7759478 Cco10g1945 Cco-Chr10:33008027 1.60E-12 dispersed
Cco10g1945 Cco-Chr10:33008027 Cco11g0678 Cco-Chr11:7388175 3.10E-161 dispersed
Cco11g0893 Cco-Chr11:11755436 Cco10g1945 Cco-Chr10:33008027 2.10E-79 transposed
Cco11g1943 Cco-Chr11:32035159 Cco10g1945 Cco-Chr10:33008027 1.30E-20 transposed
Cco11g1970 Cco-Chr11:32175938 Cco10g1945 Cco-Chr10:33008027 8.00E-78 transposed
Cco10g1945 Cco-Chr10:33008027 Cco11g1781 Cco-Chr11:30512746 9.30E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87176 PF07714 PK_Tyr_Ser-Thr 2.70E-47 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1945 - - - 0.0