Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1946 ATGGGTACCCATGGCCGAAGCAGTGAGCGGAAGAGAGAGAAGAAATCATCTTCGCGGAGACGCAGCAGAAGAAGGTCCGATGACTCTGAATCTGATTCAGACGACTCAGATAGCCGCGATTCATCTCCTGTGGCTAGCTCCCGGAAGCGCAGGGAAAGACGGGATTGTAGCAGAAGCATCCACCGGAGTAAGCGACGGAGCTCCTCTCGTGGGCGGGATTCCGGTGACGATAGTTCAAATGATAGTTATGACAGTGATGATGGAGGTCGCAAGAAGATTAAGTCTTCGAGGAAAGTTACCGAAGAGGAAATTAGCGAATACTTGGCCAAGAAAGCGCAGAAAAAGGCCTTGCGAGTTGCTAAGAAATTGAAGTCACAGACGGTTTCTGGTTATTCTAACGATTCGAATCCATTTGGCGACTCGAATCTGAATGAAAAATTTGTTTGGCGAAAGAAAATTGAGCGCGATGTTACTCAAGGCGTTCCACTTGATGCCTTCTCAGTGAAGGCTGAGAAAAAAAGACAGAGAGAAAGAATGGCAGAGATTGAAAAGGTGAAGAAAAGAAGGGAGGAAAGGGCTCTTGAAAAAGCACAACATGAGGAAGAAATGGCATTGCTAGCTCGAGAGCGTGCTCGTGCTGAATTTCAGGACTGGGAGAAAAAGGAAGAAGAGTTTCATTTTGATCAAAGCAAAATCAGATCAGAGATAAGAGTTCGTGATGGGCGTTCGAAGCCTATAGATATTCTGTCCAAGCAGCTGAATGGGTCAGATGATTTTGATATAGTAATTAATGAGCCATACACTGTATTCAAGGGCTTGACTGTGAAAGAGATGGAGGAGCTTCGTGATGACATCAAAATGCATCTTGATCTGGACAGGGCGACACCTACACATATTGAGTATTGGGAGGCTCTTCTTGTGGTTTGTGATTGGGAACTAGCTGAAGCTCGAAAGAAGGATGCTTTGGATAGAGCCAGAGTTCGTGGTGAGGAGCCTCCTGCTGAGTTGCTTGCAGAAGAAAGGGGTCTGCATTCTAGCATTGAAACAGATGTCAAAAATCTGCTGGAAGGAAAGACTTATGGTGAATTGGAGGCATTACAATCTCAAATTGAGTCACAGATGCGATCTGGAACAGCAAAGGTGGTTGAGTACTGGGAGGCTGTCCTAAAGCGCCTTCATATATACAAGGCCAAGGCTTGCTTGAAGGAAATTCATACGAAAAAACTGCATGAGCATCTTGTACGTCTTGAGCAACCTTTCGAGGATGTTGAAGAACAGATGGAGCAGGAAATCAAGATGGAAACTGATCATTCTTTACAAGTGAAAGCTGATGATGATGAGCATGATATTGAAGAACCCCAAACATATTCGCCTGATCTCCCCGAGGAAGAAGATAATCAAGAGGCAGGTTCATTTTCACCAGAACTTATGCATGGTGATGAAGATGAAGAGGCTGTTGATCCTGAGGAAGATAGGGCCATACTGGAACGTAAGCGTGTTGCTGTCTTAGAAGAACAGCAGAGACGGATCCAAGAAGCAATGGCAACGAAACCTGCTCCAGTAGAGGATAATTTTGAACTGAAAGCTTCAAAAGCCATGGGAGTCATGGAGGAAGGCGATGCAGTTTTTGGATCTGGTGCTGAAGTGAACCTAGATTCACAGGTTTATTGGTGGCATGATAAATATCGTCCGAGAAAACCAAAATACTTCAATCGGGTTCATACGGGATATGAGTGGAACAAGTACAACCAGACTCACTATGATCATGACAATCCACCGCCAAAGATTGTGCAAGGATATAAGTTTAACATCTTCTATCCAGACCTTGTTGACAAGACAAAAGCTCCAACTTACACCATTGAAAAGGATGGAAACAGCAGCGAGACATGTATCATAAGGTTCCATGCAGGGCCACCATATGAGGATATTGCATTCCGAATTGTAAACAAAGAATGGGAATACTCTCATAAGAAGGGGTTCAAGTGCACATTTGAGCGTGGAATTTTGCACGTATACTTCAACTTTAAACGATATCGTTATCGCAGCCTTCACTTTCAGGCAACTTTGCTCCCAGCTGCCGGGTTTGATGCTCCAACCTTCCTATCTTTTCGTATTCTACCACTGTTTTAG 2130 44.41 MGTHGRSSERKREKKSSSRRRSRRRSDDSESDSDDSDSRDSSPVASSRKRRERRDCSRSIHRSKRRSSSRGRDSGDDSSNDSYDSDDGGRKKIKSSRKVTEEEISEYLAKKAQKKALRVAKKLKSQTVSGYSNDSNPFGDSNLNEKFVWRKKIERDVTQGVPLDAFSVKAEKKRQRERMAEIEKVKKRREERALEKAQHEEEMALLARERARAEFQDWEKKEEEFHFDQSKIRSEIRVRDGRSKPIDILSKQLNGSDDFDIVINEPYTVFKGLTVKEMEELRDDIKMHLDLDRATPTHIEYWEALLVVCDWELAEARKKDALDRARVRGEEPPAELLAEERGLHSSIETDVKNLLEGKTYGELEALQSQIESQMRSGTAKVVEYWEAVLKRLHIYKAKACLKEIHTKKLHEHLVRLEQPFEDVEEQMEQEIKMETDHSLQVKADDDEHDIEEPQTYSPDLPEEEDNQEAGSFSPELMHGDEDEEAVDPEEDRAILERKRVAVLEEQQRRIQEAMATKPAPVEDNFELKASKAMGVMEEGDAVFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGNSSETCIIRFHAGPPYEDIAFRIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRYRSLHFQATLLPAAGFDAPTFLSFRILPLF 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33016569 33021815 - CcPI632755_10g019460.1 Cco10g1946 190904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1946 709 Coils Coil 172 216 - -
Cco10g1946 709 MobiDBLite consensus disorder prediction 442 491 - -
Cco10g1946 709 MobiDBLite consensus disorder prediction 1 102 - -
Cco10g1946 709 MobiDBLite consensus disorder prediction 22 53 - -
Cco10g1946 709 Pfam Cactus-binding C-terminus of cactin protein 558 681 IPR019134 GO:0005515(InterPro)
Cco10g1946 709 PANTHER POLYGLUTAMINE BINDING PROTEIN 1/MARVEL MEMBRANE-ASSOCIATING DOMAIN CONTAINING 3 43 681 - GO:0005681(PANTHER)|GO:0005737(PANTHER)|GO:0045292(PANTHER)
Cco10g1946 709 Pfam Conserved mid region of cactin 208 405 IPR018816 -
Cco10g1946 709 MobiDBLite consensus disorder prediction 54 68 - -
Cco10g1946 709 MobiDBLite consensus disorder prediction 69 102 - -
Cco10g1946 709 SMART CactinC_cactus_3 558 682 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1946 K25058 - csv:101205416 1170.99