Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1947 ATGCGGGCCTTCTCTTCCTTGATCTTGGCCTTAGCATTCGCCGTTCTGCCGGCGACGGTGGTTTACTGTGGCTTTCCCGTCCCACTTCTCTCTCTGCACAGGGCCTTCCCTTCTTCTCTCCCTGTCCAACTCGAAACCCTCAGAGCTCGGGACCGACTCAGGCATGCCAGAATCTTGCAAGGTGTTGTCGACTTCTCAGTCGAAGGTTCTTCCGATCCATTACTCGTCGGGCTGTACTTTACCAAAGTCAAATTGGGCACTCCCCCGATGGAATTTACGGTACAGATCGACACTGGAAGTGATATATTGTGGGTTAACTGCAATTCCTGCAATGGCTGCCCCAGATCAAGTGGACTTGGAATTCAACTAAATTTCTTTGATGCTTCTAGCTCATCAAGTTCTTCACTCGTCTCCTGTTCTGACCCAATATGCAATTCTGCATTCCAAACGACTGCAACACAGTGTTTAACTCAGAGTAATCAATGCAGTTACACCTTTCAGTATGGCGATGGAAGTGGAACATCAGGTTATTATGTATCTGAGTCCATGTACTTTGACATGGTCATGGGACATTCTATGATTGCTAACTCTTCAGCTAGTGTTGTTTTTGGTTGTAGCACCTATCAGTCTGGAGACTTGACTAAATCAGACCATGCAATAGATGGCATTTTTGGATTTGGCCCCGGGGATTTGTCTGTCATATCACAGTTGTCAGCCCGAGGGATAACCCCTAAAGTATTTTCCCATTGTTTAAAGGGAGAAGGAAATGGTGGTGGTATATTGGTTCTTGGTGAGGTTTTGGAGCCAGGCATTGTGTATAGCCCACTTGTGCCCTCTCAGCCTCACTATAACTTATATCTGCAAAGCATCGCTGTCAATGGTCAGACACTGCCAATTGATCCGTCTGTGTTTGCAACATCAGTAAATCGAGGAACTATTGTAGACTCTGGGACAACATTGGCTTACCTTGTTGAAGAAGCTTATACTCCATTTGTCAGTGCTATAACTGCTGCTGTTTCCCAATCTGTAACTCCTACTATTTCAAAGGGCAACCAGTGTTATCTAGTATCCACTAGTGTAGGCGAGATATTTCCTCTGGTTAGCTTAAACTTTGCGGGCAGTGCATCTATGGTGTTAAAACCCGAAGAGTATCTTATGCATCTTGGCTTTTATGATGGTGCTGCATTGTGGTGCATTGGTTTTCAGAAAGTTCAGGAAGGAGTAACGATCTTAGGAGATCTTGTTATGAAAGATAAGATATTTGTATATGATTTGGCTCGCCAGCGAATCGGGTGGGCAAACTATGATTGTTCTCAAGCTGTAAATGTATCAGTCACATCTGGGAAGAACGAGTTCGTCAATGCAGGGCAGTTGAGCGTGAGCGGCTCAACCCGAGATAAGCTCCTTCAATCACTATCTATGGTAGCATTAGCAATGTGTTTGAGCGATTTCCTTTTCGCAATGGCGGCAGTTTCTCAGACGACGGTTCATGCCTCTCCGGCTTCCCTCTACGTTGGCGACCTTCATCCTGATGTCACTGATGGCCAGCTCTTTGATGCTTTCTCTGGATTCAAGAGCCTCGCCTCTGTTCGTATCTGTAGAGATTCCTCCACTGGGCGCTCTCTCTCTTATGGCTATGTCAATTTCATTTCTCCTCAAGATGCAACCAATGCCATGGAGGTAATGAATCACAGTATGCTGAATGGAAGAGCGATTCGAGTCATGTGGTCACGTCGCGATGCTGATGCAAGAAAAAGTGGAATTGGAAACGTGTTTGTTAAGAACTTGAGCGATTCAATCAATAGTTTAGGACTTCAAGAGCTATTTAAGAAATTTGGAAATGTTCTGTCCAGCAAAGTTGCCACATTCGATGATGGGAAGAGCAAAGGATATGGCTTTGTTCAATTTGAGTCGGAGGATTCTGCAAATGCTGCCATAGAGTCAATGAATGGTTTTACCATTGGTGATAAGCAGATATATGTTGGAAAGTTTGTCAGGAAGAGTGATCGAGTTTTGGCCAATGCTGATGTTAAATATACCAATTTGTATGTGAAAAATCTTGACCCAGAGATTGGGGAAGAGCATTTGCAGGAGAAGTTCTCTGAGTTTGGAAAGATTTCCAGCATGATTATTTCACGGGATGAGAATGGGGTGTCAAGGGGTTTTGGCTTTATAAACTTTGACAACTCTGATGATGCCAAACGGGCTTTGGAAACGCTAAATGGATCGCAACTTGGTTCTAAGGTTATCTACATTGCGAGGGCACAAAAGAAGACCGAACGTGAGGAAGTATTACGTCGACATTATGAAGAGAAATGTAAGGAGCAAGTGTTAAAATGCAAGGGATCAAATGTGTATGTGAAGAACATTGATGATGATGTTACTGATGACGAACTAAGAGAACGTTTTACTCAGTTTGGCACCATCACTTCATCAAAACTTATGCGAGATGACAAGGGAATAAACAAAGGGTTTGGATTTGTCTGCTTCTCCAATCCTGAGGAAGCTAAAAGAGCCGTGAACACTTTGCAAGGATGTATGTTTCACGGGAAGCCACTCTATTTGGCCATAGCACAAAGAAAAGAGGATAGACAAATGCAATTAAAGCTTCAGTTTGCACAACGGCTGGCAGGGATTCCTGGACCGTCAACTACAATTTTTCCTGGTGGATACCCACCTTATTACTACCCAGCACCAGGTGTTGTTCCACCAGTACCATCTCGTCCAGGTCTGATGTTTCCGCCTTTAGGAATGAGGCCTGGGTGGAGAGCTAATACTTATACATCTCCTGCAAGACCTGGCTTTCAACCTTCACCTGTACCTATTATTCCAAATGCTTCGAGGCAACCCAGGCAAAACAGAGGCAAAATGAATGGACCAATGCTTTCTCATCAAAATGGAGTCCAAGCCGTCTCTTATATGCAAAATTCACAAGATGCCAATCAATCAGTTGTTACTACAAAATCATCCGGCAATCAACAGTGGACTGGACAGGTTAAGTATGTCCCAAATGCTCGGCCATGCGAAACAAACAAAGCTTCTGGCCCCGCCTCAGCTGCTGCTTTTAATTCTGTTGGAGATGTCTCTCAGGGATCACAAATACTGAGCAGCATGCTTGCTTCCTCTCCCCCAGACCAACAGAAACAGATCCTTGGGGAGCATCTTTACCCCTTAGTCCAAAAACGCAAGCCGGACCTTGCTGCAAAAATTACCGGTATGCTTCTGGAGATGGACAACTCGGAGTTGCTGCTCCTGTTAGAGTCACCTGAATCTCTGGCTGCCAAGGTTGAAGAAGCAGTGCAGGGTCAGGATGGAATGCTTGTTTGGAACTTGGATTTGTCGAATGCTGTTTTCTAA 3357 44.65 MRAFSSLILALAFAVLPATVVYCGFPVPLLSLHRAFPSSLPVQLETLRARDRLRHARILQGVVDFSVEGSSDPLLVGLYFTKVKLGTPPMEFTVQIDTGSDILWVNCNSCNGCPRSSGLGIQLNFFDASSSSSSSLVSCSDPICNSAFQTTATQCLTQSNQCSYTFQYGDGSGTSGYYVSESMYFDMVMGHSMIANSSASVVFGCSTYQSGDLTKSDHAIDGIFGFGPGDLSVISQLSARGITPKVFSHCLKGEGNGGGILVLGEVLEPGIVYSPLVPSQPHYNLYLQSIAVNGQTLPIDPSVFATSVNRGTIVDSGTTLAYLVEEAYTPFVSAITAAVSQSVTPTISKGNQCYLVSTSVGEIFPLVSLNFAGSASMVLKPEEYLMHLGFYDGAALWCIGFQKVQEGVTILGDLVMKDKIFVYDLARQRIGWANYDCSQAVNVSVTSGKNEFVNAGQLSVSGSTRDKLLQSLSMVALAMCLSDFLFAMAAVSQTTVHASPASLYVGDLHPDVTDGQLFDAFSGFKSLASVRICRDSSTGRSLSYGYVNFISPQDATNAMEVMNHSMLNGRAIRVMWSRRDADARKSGIGNVFVKNLSDSINSLGLQELFKKFGNVLSSKVATFDDGKSKGYGFVQFESEDSANAAIESMNGFTIGDKQIYVGKFVRKSDRVLANADVKYTNLYVKNLDPEIGEEHLQEKFSEFGKISSMIISRDENGVSRGFGFINFDNSDDAKRALETLNGSQLGSKVIYIARAQKKTEREEVLRRHYEEKCKEQVLKCKGSNVYVKNIDDDVTDDELRERFTQFGTITSSKLMRDDKGINKGFGFVCFSNPEEAKRAVNTLQGCMFHGKPLYLAIAQRKEDRQMQLKLQFAQRLAGIPGPSTTIFPGGYPPYYYPAPGVVPPVPSRPGLMFPPLGMRPGWRANTYTSPARPGFQPSPVPIIPNASRQPRQNRGKMNGPMLSHQNGVQAVSYMQNSQDANQSVVTTKSSGNQQWTGQVKYVPNARPCETNKASGPASAAAFNSVGDVSQGSQILSSMLASSPPDQQKQILGEHLYPLVQKRKPDLAAKITGMLLEMDNSELLLLLESPESLAAKVEEAVQGQDGMLVWNLDLSNAVF 1118
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33026718 33038034 - CcPI632755_10g019470.1 Cco10g1947 190905
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0719 Cco-Chr8:18769855 Cco10g1947 Cco-Chr10:33026718 3.60E-35 dispersed
Cco08g0857 Cco-Chr8:20441841 Cco10g1947 Cco-Chr10:33026718 1.00E-121 dispersed
Cco10g1947 Cco-Chr10:33026718 Cco11g1698 Cco-Chr11:29796306 6.30E-31 dispersed
Cco03g0203 Cco-Chr3:2107869 Cco10g1947 Cco-Chr10:33026718 7.10E-09 transposed
Cco03g1182 Cco-Chr3:22896158 Cco10g1947 Cco-Chr10:33026718 2.60E-91 transposed
Cco10g1184 Cco-Chr10:24473883 Cco10g1947 Cco-Chr10:33026718 2.00E-14 transposed
Cco11g0973 Cco-Chr11:15543936 Cco10g1947 Cco-Chr10:33026718 1.20E-87 transposed
Cco10g1947 Cco-Chr10:33026718 Cco02g2327 Cco-Chr2:35701570 1.10E-168 wgd
Cco10g1947 Cco-Chr10:33026718 Cco04g1163 Cco-Chr4:27055488 2.40E-163 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1947 K13126 - csv:101203793 1106.28