Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1973 ATGATAGTTGTCAAACGTTTATCGACCACAAATAATGTTGAAGCAAATGACGAAGTTATAAACAGAGAAAGGGGGGTTTTAGGTTGCCGGAAGGACGAAGAAGCTTTATCAGTCGGAAATCGGGATCCGGTAAAGAAGCAACGCCGAAGTTCGACGGCGATGGATAGAGAGTGGGGGTCGAAGCCGGGAAGTGGAGGAGCGGCCTCGGCACAAAATGAAGCTATCGATCGCAGAGAGCGTCTTCGACGGCTGGCTCTCGAGACCATCGATCTCGCCAAGGATCCCTATTTTATGCGGAATCATCTTGGAAGTTATGAGTGTAAGCTTTGCTTGACTCTGCACAACAATGAGGGTAATTACTTGGCGCACACGCAGGGGAAGCGGCATCAGACTAATTTGGCTAAGAGAGCTGCCCGTGAAGCCAAGGAGGCTCCTGCTCAACCTCAACCCCACAAGCGGAAGGTCTCTGTTCGCAAAACAGTTAAAATTGGAAGGCCTGGTTATCGTGTTACAAAGCAATTTGATTCTGAGACAAAGCAGAGATCTCTCCTTTTTCAGATTGAATATCCTGAAATTGAAGACCTAGCAAAGCCTAGGCATCGTTTTATGTCCTCTTATGAACAGCGTGTGCAACCTTTTGACAAAAGATACCAATATCTTCTGTTTGCAGCTGAACCATATGAGATAATTGCATTCAAGGTTCCAAGCACAGAGATTGACAAATCGACTCCAAAATTCTTCTCACACTGGGATCCGGACTCAAAAATGTTCACGTTGCAATTGTATTTCAAATCCAAGCCACAAGAGGCAAACAAGCCACCACCTGTGCCTGCAGCCAACGGAACAGTGCCATCTGCTGCACCACCAAGGCCATTGCCGCCGCCACCACAAGCTCCACCACCGCCACCACCTCCACCACAGCAAGGAGCACCACCAAGAGTCCCTCCCCCTCCGATGCCTGGGTCCTTGCCACCTCCCCCTTCTGTAATGGCCAATGGTCCTCCTAGGCCAATGCCTCCCGGTGGGGCTCCGCCCATCCCTCCGCCACCTCCAGTTGGTAATAACACAATGGCGAATTTCACTCCTGGTACTCAGATGAATCGACCTCCCATGCCACCTCCCCCACAGGGCTTCCCAGGTCAGGGTATCCGGCAGCCGCCGCCACCACCACCCAATATGGGCTAG 1185 51.14 MIVVKRLSTTNNVEANDEVINRERGVLGCRKDEEALSVGNRDPVKKQRRSSTAMDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPPPVPAANGTVPSAAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANGPPRPMPPGGAPPIPPPPPVGNNTMANFTPGTQMNRPPMPPPPQGFPGQGIRQPPPPPPNMG 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33271716 33274884 - CcPI632755_10g019730.1 Cco10g1973 190931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1973 394 PRINTS Proline rich extensin signature 289 305 - -
Cco10g1973 394 PRINTS Proline rich extensin signature 330 355 - -
Cco10g1973 394 PRINTS Proline rich extensin signature 308 325 - -
Cco10g1973 394 PRINTS Proline rich extensin signature 268 289 - -
Cco10g1973 394 Gene3D - 146 272 - -
Cco10g1973 394 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 163 257 IPR031781 -
Cco10g1973 394 MobiDBLite consensus disorder prediction 38 74 - -
Cco10g1973 394 Gene3D Classic Zinc Finger 99 142 - -
Cco10g1973 394 SMART ZnF_U1_5 102 136 IPR003604 GO:0003676(InterPro)|GO:0008270(InterPro)
Cco10g1973 394 SMART CactinC_cactus_3 142 269 - -
Cco10g1973 394 MobiDBLite consensus disorder prediction 366 394 - -
Cco10g1973 394 MobiDBLite consensus disorder prediction 270 355 - -
Cco10g1973 394 FunFam Splicing factor 3a subunit 2 147 271 - -
Cco10g1973 394 PANTHER SPLICING FACTOR 3A SUBUNIT 2 54 391 IPR052092 GO:0000245(PANTHER)|GO:0005686(PANTHER)|GO:0071004(PANTHER)|GO:0071013(PANTHER)
Cco10g1973 394 Pfam Zinc-finger of C2H2 type 105 129 IPR013087 -
Cco10g1973 394 ProSiteProfiles Zinc finger matrin-type profile. 105 135 IPR000690 GO:0003676(InterPro)|GO:0005634(InterPro)|GO:0008270(InterPro)
Cco10g1973 394 MobiDBLite consensus disorder prediction 268 394 - -
Cco10g1973 394 MobiDBLite consensus disorder prediction 38 55 - -
Cco10g1973 394 SUPERFAMILY beta-beta-alpha zinc fingers 101 136 IPR036236 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1973 K12826 - csv:101202831 469.544