Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g1973 | ATGATAGTTGTCAAACGTTTATCGACCACAAATAATGTTGAAGCAAATGACGAAGTTATAAACAGAGAAAGGGGGGTTTTAGGTTGCCGGAAGGACGAAGAAGCTTTATCAGTCGGAAATCGGGATCCGGTAAAGAAGCAACGCCGAAGTTCGACGGCGATGGATAGAGAGTGGGGGTCGAAGCCGGGAAGTGGAGGAGCGGCCTCGGCACAAAATGAAGCTATCGATCGCAGAGAGCGTCTTCGACGGCTGGCTCTCGAGACCATCGATCTCGCCAAGGATCCCTATTTTATGCGGAATCATCTTGGAAGTTATGAGTGTAAGCTTTGCTTGACTCTGCACAACAATGAGGGTAATTACTTGGCGCACACGCAGGGGAAGCGGCATCAGACTAATTTGGCTAAGAGAGCTGCCCGTGAAGCCAAGGAGGCTCCTGCTCAACCTCAACCCCACAAGCGGAAGGTCTCTGTTCGCAAAACAGTTAAAATTGGAAGGCCTGGTTATCGTGTTACAAAGCAATTTGATTCTGAGACAAAGCAGAGATCTCTCCTTTTTCAGATTGAATATCCTGAAATTGAAGACCTAGCAAAGCCTAGGCATCGTTTTATGTCCTCTTATGAACAGCGTGTGCAACCTTTTGACAAAAGATACCAATATCTTCTGTTTGCAGCTGAACCATATGAGATAATTGCATTCAAGGTTCCAAGCACAGAGATTGACAAATCGACTCCAAAATTCTTCTCACACTGGGATCCGGACTCAAAAATGTTCACGTTGCAATTGTATTTCAAATCCAAGCCACAAGAGGCAAACAAGCCACCACCTGTGCCTGCAGCCAACGGAACAGTGCCATCTGCTGCACCACCAAGGCCATTGCCGCCGCCACCACAAGCTCCACCACCGCCACCACCTCCACCACAGCAAGGAGCACCACCAAGAGTCCCTCCCCCTCCGATGCCTGGGTCCTTGCCACCTCCCCCTTCTGTAATGGCCAATGGTCCTCCTAGGCCAATGCCTCCCGGTGGGGCTCCGCCCATCCCTCCGCCACCTCCAGTTGGTAATAACACAATGGCGAATTTCACTCCTGGTACTCAGATGAATCGACCTCCCATGCCACCTCCCCCACAGGGCTTCCCAGGTCAGGGTATCCGGCAGCCGCCGCCACCACCACCCAATATGGGCTAG | 1185 | 51.14 | MIVVKRLSTTNNVEANDEVINRERGVLGCRKDEEALSVGNRDPVKKQRRSSTAMDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPPPVPAANGTVPSAAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANGPPRPMPPGGAPPIPPPPPVGNNTMANFTPGTQMNRPPMPPPPQGFPGQGIRQPPPPPPNMG | 394 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 33271716 | 33274884 | - | CcPI632755_10g019730.1 | Cco10g1973 | 190931 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g1973 | 394 | PRINTS | Proline rich extensin signature | 289 | 305 | - | - | |
Cco10g1973 | 394 | PRINTS | Proline rich extensin signature | 330 | 355 | - | - | |
Cco10g1973 | 394 | PRINTS | Proline rich extensin signature | 308 | 325 | - | - | |
Cco10g1973 | 394 | PRINTS | Proline rich extensin signature | 268 | 289 | - | - | |
Cco10g1973 | 394 | Gene3D | - | 146 | 272 | - | - | |
Cco10g1973 | 394 | Pfam | Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) | 163 | 257 | IPR031781 | - | |
Cco10g1973 | 394 | MobiDBLite | consensus disorder prediction | 38 | 74 | - | - | |
Cco10g1973 | 394 | Gene3D | Classic Zinc Finger | 99 | 142 | - | - | |
Cco10g1973 | 394 | SMART | ZnF_U1_5 | 102 | 136 | IPR003604 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
Cco10g1973 | 394 | SMART | CactinC_cactus_3 | 142 | 269 | - | - | |
Cco10g1973 | 394 | MobiDBLite | consensus disorder prediction | 366 | 394 | - | - | |
Cco10g1973 | 394 | MobiDBLite | consensus disorder prediction | 270 | 355 | - | - | |
Cco10g1973 | 394 | FunFam | Splicing factor 3a subunit 2 | 147 | 271 | - | - | |
Cco10g1973 | 394 | PANTHER | SPLICING FACTOR 3A SUBUNIT 2 | 54 | 391 | IPR052092 | GO:0000245(PANTHER)|GO:0005686(PANTHER)|GO:0071004(PANTHER)|GO:0071013(PANTHER) | |
Cco10g1973 | 394 | Pfam | Zinc-finger of C2H2 type | 105 | 129 | IPR013087 | - | |
Cco10g1973 | 394 | ProSiteProfiles | Zinc finger matrin-type profile. | 105 | 135 | IPR000690 | GO:0003676(InterPro)|GO:0005634(InterPro)|GO:0008270(InterPro) | |
Cco10g1973 | 394 | MobiDBLite | consensus disorder prediction | 268 | 394 | - | - | |
Cco10g1973 | 394 | MobiDBLite | consensus disorder prediction | 38 | 55 | - | - | |
Cco10g1973 | 394 | SUPERFAMILY | beta-beta-alpha zinc fingers | 101 | 136 | IPR036236 | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g1973 | K12826 | - | csv:101202831 | 469.544 |