Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1977 ATGCCGTTTCAGAGGATAGTTATCGCCGTCGGCCGGCCGGAGGAGGCCACCCACCCCGCCGCCCTGAAGGCCGCCTTGGCCGAGTTCATTTCCACTCTTATCTTCGTTTTCGCCGGCCAAGGTTCCGGTCTGGCTTTCTCTAAGCTCACCCATAATTCTCCCACCAGCCCTGCCGGCCTCATCAGCGCTTCCTTAGCTCATGGCTTTGCCCTTTTCGTCGGTGTCTCCACCGCCGCCAACATCTCCGGCGGCCACCTCAACCCTGCCGTCACTTTCGGCGCCTTGGTCGGCGGTAACATCACTCTCCTCCGCGGGATTCTTTACTGGATCGCCCAGCTCCTCGGCGCTGTCGTCGCTAACTTGTTGCTCAAGTTCGTCATCGTCGACGTGGCTATTACGGGATTCTTGCCTACAGCAGGAGTGGGAGTATGGGAAGCATTTGTATTCGAGATCGCAATGACATTCGGATTAGTCTACACAGTATACGCCACCGCCATTGATCCCAAGAGAGGTGAGTTGGGAGTAATAGCACCCATTGCCATCGGATTAATTGTGGCGGCCAACATTCTGGTGGGTGGCCCATTCACGGGAGCCTCCATGAACCCAGCAGTGGCCTTCGGACCTGCCCTGGTGTCTTGGTCTTGGGGTGACCATTGGATCTACTGGGCTGGCCCACTCATCGGCGGCGGCTTAGCCGGCATTGTGTATGAGCTCTTCTTCATTGGGTTCACCCACGAGCCCTTGCCCGCTGCAGAGTACTGA 762 57.87 MPFQRIVIAVGRPEEATHPAALKAALAEFISTLIFVFAGQGSGLAFSKLTHNSPTSPAGLISASLAHGFALFVGVSTAANISGGHLNPAVTFGALVGGNITLLRGILYWIAQLLGAVVANLLLKFVIVDVAITGFLPTAGVGVWEAFVFEIAMTFGLVYTVYATAIDPKRGELGVIAPIAIGLIVAANILVGGPFTGASMNPAVAFGPALVSWSWGDHWIYWAGPLIGGGLAGIVYELFFIGFTHEPLPAAEY 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33302486 33304537 + CcPI632755_10g019770.1 Cco10g1977 190935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1977 253 CDD MIP 23 239 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco10g1977 253 PRINTS Major intrinsic protein family signature 149 167 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco10g1977 253 PRINTS Major intrinsic protein family signature 67 91 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco10g1977 253 PRINTS Major intrinsic protein family signature 104 123 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco10g1977 253 PRINTS Major intrinsic protein family signature 182 204 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco10g1977 253 PRINTS Major intrinsic protein family signature 219 239 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco10g1977 253 PRINTS Major intrinsic protein family signature 23 42 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco10g1977 253 SUPERFAMILY Aquaporin-like 15 248 IPR023271 -
Cco10g1977 253 FunFam Probable aquaporin TIP1-1 6 253 - -
Cco10g1977 253 PANTHER AQUAPORIN-8 5 246 IPR034294 GO:0006833(PANTHER)|GO:0009705(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Cco10g1977 253 Pfam Major intrinsic protein 16 236 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco10g1977 253 Gene3D Glycerol uptake facilitator protein. 6 248 IPR023271 -
Cco10g1977 253 NCBIfam MIP family channel protein 27 236 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco10g1977 253 ProSitePatterns MIP family signature. 85 93 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1605 Cco-Chr1:28740662 Cco10g1977 Cco-Chr10:33302486 4.50E-74 dispersed
Cco09g0180 Cco-Chr9:1649469 Cco10g1977 Cco-Chr10:33302486 4.00E-71 dispersed
Cco09g2212 Cco-Chr9:36467524 Cco10g1977 Cco-Chr10:33302486 3.80E-85 dispersed
Cco10g1977 Cco-Chr10:33302486 Cco10g2017 Cco-Chr10:33662070 2.10E-27 dispersed
Cco10g1977 Cco-Chr10:33302486 Cco04g1150 Cco-Chr4:26865090 5.80E-102 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1977 K09873 - csv:101222386 460.299