Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1983 ATGGCCGCCTCAAATTCCACCTCCCCCAACCCCTTCTGGTACCAGTTGCTCTTTGGCCGGTGGTTCTCTATTTTTGCTTCCATTCTCATCATGTCCGTCTCCGGCGCCACCTATATGTTCGGCCTCTACTCCTCCGACATCAAATCCTCCTTAGGCTACGACCAAACCACCGTCAATTTGCTCAGCTTCTTCAAGGACTTAGGCGGCAATGTCGGCGTCATCAGCGGCCTCATCAACGAGGTCGCTCCGGCCTGGATCGTTCTTCTCATCGGCGCCATCATGAACCTTTTCGGCTACACCATGATTTGGCTGGCTGTAACCAATCGGATCCCCAAGCCCCAGATCTGGCATATGTGTCTCTACATTTGTATAGGAGCTAATTCTCAGACCTTTGCTAATACAGGGGCTCTTGTAACCTCCGTCAAAAACTTCCCGGAAAGTCGTGGTAGCGTTTTGGGACTTTTGAAGGGATTCGTCGGCTTAAGCGGCGCTATTTTGTCCCAGCTTTTCCATGCCTTTTATGGCAACAACTCCAAGTCTCTTATCCTCTTAATCGCTTGGCTTCCTGCAGCCGTCTCTGTTACTTTCCTCCGTTTCGTTCGCATCATTAAGGATCTCCGGCAGCCCAACGAGCTCAAAGTTTTTTACCATATCCTTTATATTTCTCTTAGCCTTGCTGGGTCGTTAATGGTTTTGATTATTTTGCAAAATCGTCTCCGATTTCAACAAATACAATACGCGGGAAGTGTCATTGTCGTGATTGTTCTGCTTCTACTGCCTCTAGCCATTGTTTTCAGAGAGGAATTGAGTATTTGGAAGAATAAAACCGGAGGTCCAATTTTACAATTAGAGCTAGCATCACAACAACCACTCCCACCAGTGACTTCGGTGGTGCCACCAGCGCCGCCGAGCCCTCCCTCGGGCTCTTGTTTTAAAAACACGTTTAAACCCCCAAACAGAGGAGAAGATTACACAATTCCACAAGCCATTTTCAGCATCGATATGGTAATTATTTTTATCGCCACAATTTGTGGTGTCGGTGGAACATTGACGGCAATCGACAATTTGGGCCAAATCGGAGAGTCTTTAGGATACCCATCTCACAGTACCACCACATTCATCTCTCTTGTCAGCATATGGAATTACCTCGGCCGTGTAGTCTCCGGATTCGTATCAGAATATTTCTGGAAAAAGTACAAAGTCCCACGTCCTCTATTTCTCTTCGCGACACTTATTTTATCCTGCGTCGGCCATCTTCTAATCGCATTCGGAGTTCCAAATTCGCTGTATTTTTCTTCAATCATAATTGGGTTCTGCTTTGGTGCACAATGGCCGTTGATCTTCGCAATCATATCGGAAATTTTCGGTCTGAAGTACTACGCAACTCTATACAATTTGGGAGGAACGGCGAGTCCGATTGGGGCGTATATTATGAGCGTGAGAGTGGCAGGTCATTTGTACGACAAAGAGGCGCAGCGACAAATGGAGGCGGCGGGACGACAGAGAAAAATAGGAGAGGATTTGATTTGCTTGGGAGTGGAATGTTATAGAAAGGCGTTTCTTATAATCACGGCAGCGACGGTGTTGGGAGGACTTGTTTCGCTGATTTTGGTTGTTCGGACATGGAAGTTTTATAAGGGCGATATTTACAGGAAGTTCAGGGAGGAGGAAGGTGAAGACGTAGACATGAAAATTGCCGCTCCAACAAATAGTGTGTTGACGGCCACAAAATCTGAATCTGTTTAG 1746 46.74 MAASNSTSPNPFWYQLLFGRWFSIFASILIMSVSGATYMFGLYSSDIKSSLGYDQTTVNLLSFFKDLGGNVGVISGLINEVAPAWIVLLIGAIMNLFGYTMIWLAVTNRIPKPQIWHMCLYICIGANSQTFANTGALVTSVKNFPESRGSVLGLLKGFVGLSGAILSQLFHAFYGNNSKSLILLIAWLPAAVSVTFLRFVRIIKDLRQPNELKVFYHILYISLSLAGSLMVLIILQNRLRFQQIQYAGSVIVVIVLLLLPLAIVFREELSIWKNKTGGPILQLELASQQPLPPVTSVVPPAPPSPPSGSCFKNTFKPPNRGEDYTIPQAIFSIDMVIIFIATICGVGGTLTAIDNLGQIGESLGYPSHSTTTFISLVSIWNYLGRVVSGFVSEYFWKKYKVPRPLFLFATLILSCVGHLLIAFGVPNSLYFSSIIIGFCFGAQWPLIFAIISEIFGLKYYATLYNLGGTASPIGAYIMSVRVAGHLYDKEAQRQMEAAGRQRKIGEDLICLGVECYRKAFLIITAATVLGGLVSLILVVRTWKFYKGDIYRKFREEEGEDVDMKIAAPTNSVLTATKSESV 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33350382 33352127 - CcPI632755_10g019830.1 Cco10g1983 190941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1983 581 CDD MFS_Mch1p_like 19 530 - -
Cco10g1983 581 Gene3D MFS general substrate transporter like domains 328 544 IPR036259 -
Cco10g1983 581 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 20 554 - GO:0016020(PANTHER)
Cco10g1983 581 SUPERFAMILY MFS general substrate transporter 23 547 IPR036259 -
Cco10g1983 581 Pfam Nodulin-like 20 265 IPR010658 -
Cco10g1983 581 Pfam Major Facilitator Superfamily 358 537 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1280 Cco-Chr2:24409518 Cco10g1983 Cco-Chr10:33350382 8.10E-85 dispersed
Cco06g1853 Cco-Chr6:28792485 Cco10g1983 Cco-Chr10:33350382 1.20E-26 dispersed
Cco06g1854 Cco-Chr6:28796046 Cco10g1983 Cco-Chr10:33350382 1.40E-83 dispersed
Cco10g1983 Cco-Chr10:33350382 Cco11g0731 Cco-Chr11:8081080 6.90E-82 dispersed
Cco10g1983 Cco-Chr10:33350382 Cco10g1986 Cco-Chr10:33376859 1.40E-199 proximal
Cco10g1983 Cco-Chr10:33350382 Cco10g1987 Cco-Chr10:33378333 1.60E-30 proximal
Cco04g0411 Cco-Chr4:13370629 Cco10g1983 Cco-Chr10:33350382 1.20E-158 transposed
Cco10g1983 Cco-Chr10:33350382 Cco04g1147 Cco-Chr4:26833413 1.30E-208 wgd
Cco10g1983 Cco-Chr10:33350382 Cco05g2390 Cco-Chr5:32381704 3.80E-205 wgd
Cco10g1983 Cco-Chr10:33350382 Cco08g0923 Cco-Chr8:21147416 1.10E-193 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1983 - - - 0.0