Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1986 ATGGCCGCCTCAAATCCCACCTCCGGCTACCCATTCTGGCACCAGTTGTTCTTTGAGCGGTGGTTCTCTGTCTTTGCTTCCTTTCTCATCATGTCCGTCTCCGGCGCCAGCTTCATGTTTGCCCTTTACTCCTCCGACATCAAATCCTCATTAGGCTACGACCAAACCACCCTCAATTTACTCAGCTTCTTCAAGGACTTAGGCAGCAATGTCGACATCATCAGCGGCCTCATCAACGAGGTCGCTCCGGCCTGGGTGGTTCTTCTAATCGGCGCCGTCATGAACCTTTTTGGCTACACCATGATTTGGCTGGCCGTAACCAATCGGATCCCCAAGCCCCAAATGTGGCATATGTATCTTTACATTTGCATCGGAGCTAATTCTCAGACCTTTCCAAATCAGGGACTCTTCCGCGCCATCTCTGTTATTTTCCTCCGTTTCATTCGCATCATTAAGGATCTCCGGCAGCCCAACGAGCTCAAAGTTTTTTACCATATCCTTTATATTTCTCTCGGCCTTGCAGGGACTTTAATGATTTTAATTATTTTGCAAAATCATCTTCGATTTCAACAAATACAATATGTTGGAAGTGTCATTGTTGTGATTGTTCTGCTTTTACTACCTCTAGCCATCGTTTTCAGAGAGGAACATAGTGTTTGGAAGAGTAAAATCAAAAACCCAATTTCACAATTGGAGTTAGCGTCCCAACAACCGCCGCCGTCATTGATTTCAGGGATGCCACCGAGCCCTTCGTCGGGCTCCTGCTTTAAAAATACGTTTAAACCCCCAAGTAGAGGAGAGGACTACACGATTCCACAAGCAATATTTAGCGTCGATATGATAATTCTTTTTATCACCACAATCTGTGACATCGGTGGAACATTGACGGCGATGGACAATTTGGGCCAAATCGGGGAGTCTTTGGGGTATCCATCTCACAGTACCACCATATTCATCTCTCTAGTGAGCATATGGAATTACCTAGGTCGTGTAGTCTCCGGATTCTTATCGGATTACTTCTGGAAAAAGTACAAACTCCCACGTCCTTTGTTGGTCTTCGCGACGCTTATTCTGTCCTGCGTGGGTCATCTTCTAATCGCATTTGGAGTTCCGAATTCATTGTATTTTTCTTCAATCATATTCGGGTTATGCTTTGGCGCGCAGTGGCCCTTGATCTTAGCAATCATATCGGAAATATTTGGGTTGAAGTACTATGCAACTCTGTGCAATTTGGGAGGAGCGGCAAGCCCGATCGGGGCGTATATTATGAAAGTGAGAGTTGCAGGTCATTTGTAG 1296 45.68 MAASNPTSGYPFWHQLFFERWFSVFASFLIMSVSGASFMFALYSSDIKSSLGYDQTTLNLLSFFKDLGSNVDIISGLINEVAPAWVVLLIGAVMNLFGYTMIWLAVTNRIPKPQMWHMYLYICIGANSQTFPNQGLFRAISVIFLRFIRIIKDLRQPNELKVFYHILYISLGLAGTLMILIILQNHLRFQQIQYVGSVIVVIVLLLLPLAIVFREEHSVWKSKIKNPISQLELASQQPPPSLISGMPPSPSSGSCFKNTFKPPSRGEDYTIPQAIFSVDMIILFITTICDIGGTLTAMDNLGQIGESLGYPSHSTTIFISLVSIWNYLGRVVSGFLSDYFWKKYKLPRPLLVFATLILSCVGHLLIAFGVPNSLYFSSIIFGLCFGAQWPLILAIISEIFGLKYYATLCNLGGAASPIGAYIMKVRVAGHL 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33376859 33378311 + CcPI632755_10g019860.1 Cco10g1986 190944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1986 431 SUPERFAMILY MFS general substrate transporter 20 421 IPR036259 -
Cco10g1986 431 Pfam Nodulin-like 20 135 IPR010658 -
Cco10g1986 431 Pfam Nodulin-like 139 213 IPR010658 -
Cco10g1986 431 Gene3D MFS general substrate transporter like domains 274 427 IPR036259 -
Cco10g1986 431 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 137 431 - GO:0016020(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2390 Cco-Chr5:32381704 Cco10g1986 Cco-Chr10:33376859 2.60E-137 dispersed
Cco08g0923 Cco-Chr8:21147416 Cco10g1986 Cco-Chr10:33376859 7.10E-130 dispersed
Cco10g1986 Cco-Chr10:33376859 Cco11g0731 Cco-Chr11:8081080 5.90E-46 dispersed
Cco10g1983 Cco-Chr10:33350382 Cco10g1986 Cco-Chr10:33376859 1.40E-199 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1986 - - - 0.0