Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1993 ATGGCGATCACGCTGCGCAAATCTTTCAATTCCCAATCGCAGATTTACACTTCCCGTCGTCCTCCAATCCACTTTCCGACCGACCCCACAATCTCCATTCCCTCATTCCTCTTTCGAAACTCCTCCTCTTTCCCTAACGCCCTCGCCCTCGCCGACTCCGACTCCGGCGAATCCTTAACTTTCCGTCAGCTTCAAATACAAGTCTCCAAGCTCGCCCATGTCTTCATCCAACTCGGGATTCGAAAAAGCGATGTGGTTCTCATATTCGCCCCTAATTCCATTCACTTCCCTGTTTGTTTCTTCGCCATTGTCGCCATTGGAGCCATCGCCACCACTTGTAATCCTGCTTACACTTTCGCGGAACTGTCAAAGCAAGTCGCTAACTGCAACCCCAAGCTCGTAATCACCGTTCCCGAACTCTGGGACACAATAGGTAAACTCAACTTGCCTTCTATAATTCTGGGTTCTAAAATTTCTTCAAAATTTTCCCGTCCCAACATCTGGGGTTACTCCGATTTGATTAAAAAAGCCGGCGATGTGTCCAATTTGCCGGTGAGTGAAGTGGGTCAGAACGATGTAGCGGCTCTTTTGTATTCATCTGGGACGACTGGGATTAGTAAGGGAGTGATTCTAACTCACAGGAACTTCATAACTACCTCTTTAATGGTGACCCAAGATCAGGATCTTCTTGGTGATCCTAGAAACGTGTTTTTATGCTTTCTTCCAATGTTCCATGTGTTTGGTCTCTCTATAATTGTTTACTCGCAGCTTCAAAGAGGAAACACTGTCGTTTCAATGGCGAAGTTTGAGCTAGAAAAGGCTTTGGGGGTGGTGATGAAGTACAGGATCACTCATCTTTATGTTGTTCCACCTGTAATTATAGCTCTCACAAAGCAAAGTGTAGTGAAGAACTACGACTTGTCGTCGTTGAAGCAGATTTTATCTGGGGCAGCGCCTCTTGGGAAGGATGTGATGGAAGAATGCTCCAAGTTTATACCTCAGGCCAGGATCATCCAGGGATATGGCATGACAGAAACTTGTGGAGTTATTTCAGTGGGGAATGTGGGAGTAGAATCTACGCTATCTGGGGCAACTGGATCCCTTGTTTCAGGAGTTGAAGCGCAAGTTTTGAGTACAGAAACACAGAAACGTCTTCCACCCGGTGAAACAGGGGAAATTTGTGTGCGAGGACCAAATATGATGAAAGGATATTTCAACAATCAGGAAGCCACCAGCAAAACCATGGACGATCAGGGATGGGTACATACTGGAGATATAGGGTATTTCAACGAAGAAGGAGAATTGTTTGTTGTGGACAGAATCAAAGAACTTATCAAGTGTTATGGTTTTCAGGTTGCACCGGCAGAGCTTGAAGCATTGCTACTTTCTCACCCTCAAATAACAGATGCCATTGTGATCCCATATCCTGATGATAAAGCCGGTGAGGTCCCTATCGCATTTGTTGTTCGTTCACCCGATAGCTCGATAAAGGAAGAAGATGTTAAAAATTTTATTGCTGGGCAGGTTGCACCATATAAGAGATTAAAAAGAGTAACCTTCACAAGTAGTGTTCCGAAGTCGGTTTCGGGAAAACTTCTAAGAAGGGAGGTCATAGCACAAGTCCGTGCCAAGATGTAA 1638 45.24 MAITLRKSFNSQSQIYTSRRPPIHFPTDPTISIPSFLFRNSSSFPNALALADSDSGESLTFRQLQIQVSKLAHVFIQLGIRKSDVVLIFAPNSIHFPVCFFAIVAIGAIATTCNPAYTFAELSKQVANCNPKLVITVPELWDTIGKLNLPSIILGSKISSKFSRPNIWGYSDLIKKAGDVSNLPVSEVGQNDVAALLYSSGTTGISKGVILTHRNFITTSLMVTQDQDLLGDPRNVFLCFLPMFHVFGLSIIVYSQLQRGNTVVSMAKFELEKALGVVMKYRITHLYVVPPVIIALTKQSVVKNYDLSSLKQILSGAAPLGKDVMEECSKFIPQARIIQGYGMTETCGVISVGNVGVESTLSGATGSLVSGVEAQVLSTETQKRLPPGETGEICVRGPNMMKGYFNNQEATSKTMDDQGWVHTGDIGYFNEEGELFVVDRIKELIKCYGFQVAPAELEALLLSHPQITDAIVIPYPDDKAGEVPIAFVVRSPDSSIKEEDVKNFIAGQVAPYKRLKRVTFTSSVPKSVSGKLLRREVIAQVRAKM 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33441764 33446264 + CcPI632755_10g019930.1 Cco10g1993 190951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1993 545 FunFam Long-chain-fatty-acid--CoA ligase FadD 17 442 - -
Cco10g1993 545 ProSitePatterns Putative AMP-binding domain signature. 196 207 IPR020845 -
Cco10g1993 545 Gene3D - 13 442 IPR042099 -
Cco10g1993 545 Pfam AMP-binding enzyme 39 405 IPR000873 -
Cco10g1993 545 SUPERFAMILY Acetyl-CoA synthetase-like 17 543 - -
Cco10g1993 545 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 537 - GO:0016405(PANTHER)
Cco10g1993 545 Gene3D - 443 544 IPR045851 -
Cco10g1993 545 Pfam AMP-binding enzyme C-terminal domain 456 531 IPR025110 -
Cco10g1993 545 FunFam 4-coumarate--CoA ligase 2 443 544 - -
Cco10g1993 545 CDD 4CL 25 536 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0290 Cco-Chr3:3148328 Cco10g1993 Cco-Chr10:33441764 1.20E-192 dispersed
Cco07g0222 Cco-Chr7:2229190 Cco10g1993 Cco-Chr10:33441764 1.60E-107 dispersed
Cco10g1993 Cco-Chr10:33441764 Cco11g1304 Cco-Chr11:25655547 5.10E-103 dispersed
Cco10g1993 Cco-Chr10:33441764 Cco05g1735 Cco-Chr5:25701367 5.10E-119 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1993 K01904 - csv:101204417 992.645