Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco10g1994 | ATGTCACAAGATTCTGCGGAGATAAAGACGATTGAGCAGTGGAAATGGTCCGAAATGCAAGGGCTTGAGCTCGTCTCTTCTGATCCTCTTCCTCCCGAGCCATTTATAACCAACAACCCATCAGCTCCAACAGCGAAAAACACAGACCCTGAAGACCTCAGACCCACAGGAGAGGCTCAAGACGGAACTGGCAGAGCCACAAATAGAGAAATGGAGTCTACGAGTGATTCCAAGAAGGAAAACGGCGGTGGCACCAGTGGGGAGAAGCCTGAGGCCGTCACTGCCGTTGGGTTTGGAGAGCTTTTCAGATTCGCCGATGGGTTGGATTACGTTTTGATGGCAATCGGCTCGGTCGGAGCTCTTGTCCACGGTTGTTCTTTGCCTCTGTTTCTTCGATTCTTCGCTGATCTTGTCAACTCTTTTGGGTCTTATGCCAATGATGTGGATAAAATGATGCAGGAGGTTTTGAAGTACGCATTCTACTTTCTCGTGGTTGGAGCTGCGATATGGGCGTCATCCTGGGCAGAGATTTCGTGTTGGATGTGGACCGGCGAGCGGCAGTCCACAAAGATGAGGATCAAGTACCTAGAAGCAGCACTGGACCAGGACATTCAGTATTTTGATACAGAGGTTCGAACATCTGACGTCGTTTTCGCCATCAACACTGATGCAGTGATGGTTCAAGACGCCATTAGTGAGAAGCTGGGCAACTTCATTCACTATATGGCAACTTTTGTGTCCGGCTTCGTCGTGGGTTTCACTGCTGTTTGGCAATTGGCGTTGGTAACTCTTGCGGTGGTTCCTTTGATTGCTGTAATCGGCGGCATCTACACCACCACAATAGCCAAGCTCTCTGCCAAGACCCAGGAAGCTCTTTCAGAAGCTGGGAACATCGTCGAACAGACAATAGTTCAAATTCGAGTGGTTTTTGCATTCGTGGGCGAATCAAGAGCATTACAGAGATACTCCGCCGCATTGAAGATTTCTCAAAAGATAGGTTACAAGAGTGGATTCTCCAAGGGTATGGGACTGGGCGCCACTTACTTTGTTGTTTTCTGCTGTTACGCTCTTCTGCTCTGGTACGGTGGTTATCTTGTCAGACACCACGCCACCAATGGCGGTCTGGCCATTGCCACTATGTTTGCAGTGATGATTGGCGGACTGGCATTGGGGCAATCTGCTCCGAGCATGAGTTCATTCGCTAAGGCTAAAGTTGCAGCTGCTAAAATCTACCGTATAATCGACCATAAGCCTACTCTAAACCGCAACAACGAATCTGGTTTGGAATTAGAATCAGTTTCAGGACTGGTTGAACTGAAGAATGTAGATTTCTCATACCCATCAAGGCCAGATGTAAGAATCCTGAACAATTTCTCCCTAACTGTCCCTGCCGGAAAAACTATAGCTCTGGTCGGTAGCAGTGGCTCTGGCAAGAGCACCGTCGTCTCCCTAATTGAAAGATTCTATGACCCCATTTCAGGAGAAGTTCTACTAGATGGGCGTGACATAAAAACTTTGAAGCTGAGATGGTTAAGGCAGCAGATAGGATTGGTGAGCCAAGAACCTGCTCTTTTTGCTACCACCATCAAGGAGAATATTCTCTTGGGCAGGCCTGATGCAGACCAACTTGAGGTGGAGGAAGCTGCCCGAGTCGCCAATGCTCATTCATTCATTATCAAACTTCCTGAAGGCTATGACACCCAGGTAGGGGAAAGAGGACTGCAGCTTTCTGGAGGGCAGAAGCAGAGGATTGCAATAGCAAGGGCAATGCTTAAAAACCCTGCGATCCTACTCTTAGATGAAGCTACTAGTGCATTAGACTCTGAGTCGGAAAAGCTTGTACAGGAAGCTCTTGATCGTTTTATGATTGGGCGAACCACTCTTGTTATTGCCCATCGACTCTCTACCATTCGCAAGGCTGACCTTGTGGCTGTACTCCAACAAGGAAGTGTTTCTGAAATTGGAACACATGATGAGCTCTTTGCTAAAGGAGAGCTTGGTGTATACGCCAAGCTCATCCGGATGCAGGAGATGGCACATGAAACCGCTCTCAATAATGCCAGAAAGAGTAGTGCAAGGCCTTCAAGTGCCAGGAACTCAGTGAGCTCACCAATCATTGCACGAAATTCTTCCTATGGACGATCACCGTATTCACGTCGGTTGTCTGACTTCTCCACATCTGATTTTAGTCTTTCCCTTGATGCTTCACTTCCCAATTACAGGCTTGAAAAACTTGCCTTCAAGGAGCAAGCCAGTTCCTTTTGGCGTCTCGTGAAAATGAATTCACCTGAATGGCTTTATGCATTACTTGGTTCTATTGGCTCTGTTGTTTGTGGGTTTTTAAGTGCCTTCTTTGCATACGTTCTAAGTGCTGTTCTCAGTGTCTATTACAACCCAGACCATGGTTTCATGAGCAGAGAAATTATTAAGTACTGCTACCTATTAATCGGACTATCATCAGCTGCTCTTCTCTTCAATACAATACAGCATTTCTTCTGGGATATTGTGGGAGAGAACCTCACCAAACGTGTAAGAGAGAAGATGCTGACCGCACTACTGAAAAATGAAATGGCATGGTTTGATCAGGAAGAAAATGAGAGTGCAAAGATTGCTGCAAGGCTGGCCCTCGATGCTAACAATGTCAGATCAGCCATTGGAGACAGGATTTCTGTGATTGTACAGAACACATCACTCATGCTGGTCGCATGCACCGCTGGGTTCGTTTTGCAGTGGCGCCTATCTCTTGTCCTCGTAGCTGTCTTCCCTGTGGTTGTTGCGGCCACAGTTCTACAGAAAATGTTCATGACTGGTTTTTCAGGAGACCTTGAGGCCAACCATGCCAAGGCCACACAACTAGCAGGGGAGGCAATAGCCAATGTAAGAACAGTTGCTGCATTCAACTCGGAGGAGAAGATTGTCAGACTATTTTCGACCAACCTCGAGATCCCACTACGTCGCTGCTTTTGGAAGGGACAGATTGCTGGTAGTGGATTTGGTGTTGCTCAGTTTTCTCTTTATGCTTCCTATGCTCTTGGTCTTTGGTATGCCTCATGGCTTGTAAAGCACGGGCTCTCTGATTTTTCAAAGGCAATCCGTGTTTTCATGGTCCTTATGGTTTCTGCCAATGGTGCAGCTGAAACACTCACTCTAGCTCCTGACTTTATTAAGGGTGGTCGAGCCATGCGTTCAGTCTTTGCACTTCTTGATCGCAAAACTGAAATTGAACCTGATGATCCAGATGCCACCCCGGTCCCAGATAAACTTCGTGGAGAAGTTGAACTTAAACATGTTGACTTTTCCTACCCAACTCGTCCTGATATCCCTGTCTTTAGAGACCTTAGTTTGCGTGCTCGAGCAGGTAAGACTCTTGCTCTTGTTGGCCCTAGCGGGTGTGGCAAGAGCTCTGTTATTGCACTAGTCCAAAGATTCTACGAACCAACATCGGGACGAGTTATGATTGATGGAAAGGATATTCGTAAGTTCAATCTCAAGTCCTTGAGAAAGCACATTGCAATGGTCCCTCAGGAGCCATGCTTATTTGCTGCTTCCATATATGATAATATAGCCTATGGCCATGAATCAGCCACCGAAGCCGAGATCATTGAAGCCGCCACTTCGGCAAATGCCCATAAGTTCATATCTGGGTTGCCAGAAGGATATAAAACTTTTGTTGGGGAGAGAGGAGTTCAACTATCGGGTGGACAGAAACAAAGGATTGCAATTGCCCGTGCGCTGATCAGGAAGGCTGAGCTTATGCTACTAGATGAGGCAACGAGTGCACTCGATGCTGAGTCTGAGCGATCGGTCCAAGAGGCGCTCGACCGAGCTTGTTCGGGAAAAACTACAATTGTAGTTGCTCATCGACTATCAACTATCAGGAATGCTCATGTCATTGCAGTAATTGATGATGGTAAAGTTTCAGAACAGGGATCACATTCACATTTGTTGAAAAATTACCCCGATGGGTGTTACGCCAGGATGATACAATTACAAAGATTCACACACAGCCAAGTCATTGGTATGACTTCAGGTTCAACTTCCTCAGCAAGAACTAGGGAGGATGAGGAGAGAGAGAGCTAG | 4080 | 46.91 | MSQDSAEIKTIEQWKWSEMQGLELVSSDPLPPEPFITNNPSAPTAKNTDPEDLRPTGEAQDGTGRATNREMESTSDSKKENGGGTSGEKPEAVTAVGFGELFRFADGLDYVLMAIGSVGALVHGCSLPLFLRFFADLVNSFGSYANDVDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTKMRIKYLEAALDQDIQYFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPLIAVIGGIYTTTIAKLSAKTQEALSEAGNIVEQTIVQIRVVFAFVGESRALQRYSAALKISQKIGYKSGFSKGMGLGATYFVVFCCYALLLWYGGYLVRHHATNGGLAIATMFAVMIGGLALGQSAPSMSSFAKAKVAAAKIYRIIDHKPTLNRNNESGLELESVSGLVELKNVDFSYPSRPDVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPISGEVLLDGRDIKTLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADQLEVEEAARVANAHSFIIKLPEGYDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFAKGELGVYAKLIRMQEMAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASLPNYRLEKLAFKEQASSFWRLVKMNSPEWLYALLGSIGSVVCGFLSAFFAYVLSAVLSVYYNPDHGFMSREIIKYCYLLIGLSSAALLFNTIQHFFWDIVGENLTKRVREKMLTALLKNEMAWFDQEENESAKIAARLALDANNVRSAIGDRISVIVQNTSLMLVACTAGFVLQWRLSLVLVAVFPVVVAATVLQKMFMTGFSGDLEANHAKATQLAGEAIANVRTVAAFNSEEKIVRLFSTNLEIPLRRCFWKGQIAGSGFGVAQFSLYASYALGLWYASWLVKHGLSDFSKAIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFALLDRKTEIEPDDPDATPVPDKLRGEVELKHVDFSYPTRPDIPVFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPTSGRVMIDGKDIRKFNLKSLRKHIAMVPQEPCLFAASIYDNIAYGHESATEAEIIEAATSANAHKFISGLPEGYKTFVGERGVQLSGGQKQRIAIARALIRKAELMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVSEQGSHSHLLKNYPDGCYARMIQLQRFTHSQVIGMTSGSTSSARTREDEERES | 1359 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 33466359 | 33472346 | + | CcPI632755_10g019940.1 | Cco10g1994 | 190952 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco10g1994 | 1359 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 769 | 1056 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Cco10g1994 | 1359 | SUPERFAMILY | ABC transporter transmembrane region | 756 | 1078 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Cco10g1994 | 1359 | Gene3D | - | 1083 | 1338 | IPR027417 | - | |
| Cco10g1994 | 1359 | FunFam | ABC transporter B family member 1 | 748 | 1057 | - | - | |
| Cco10g1994 | 1359 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 759 | 1074 | - | - | |
| Cco10g1994 | 1359 | FunFam | ABC transporter B family member 1 | 427 | 677 | - | - | |
| Cco10g1994 | 1359 | ProSitePatterns | ABC transporters family signature. | 1231 | 1245 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cco10g1994 | 1359 | CDD | ABC_MTABC3_MDL1_MDL2 | 437 | 676 | - | - | |
| Cco10g1994 | 1359 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 428 | 676 | IPR027417 | - | |
| Cco10g1994 | 1359 | PANTHER | ABC TRANSPORTER B FAMILY | 68 | 701 | IPR039421 | GO:0005887(PANTHER)|GO:0042626(PANTHER) | |
| Cco10g1994 | 1359 | ProSitePatterns | ABC transporters family signature. | 576 | 590 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cco10g1994 | 1359 | SUPERFAMILY | ABC transporter transmembrane region | 101 | 415 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Cco10g1994 | 1359 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1092 | 1328 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cco10g1994 | 1359 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 114 | 402 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Cco10g1994 | 1359 | Gene3D | ABC transporter type 1, transmembrane domain | 160 | 1065 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Cco10g1994 | 1359 | MobiDBLite | consensus disorder prediction | 1339 | 1359 | - | - | |
| Cco10g1994 | 1359 | Pfam | ABC transporter | 1111 | 1259 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cco10g1994 | 1359 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 437 | 673 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cco10g1994 | 1359 | MobiDBLite | consensus disorder prediction | 71 | 85 | - | - | |
| Cco10g1994 | 1359 | FunFam | ABC transporter B family member 19 | 1058 | 1080 | - | - | |
| Cco10g1994 | 1359 | Pfam | ABC transporter transmembrane region | 115 | 386 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Cco10g1994 | 1359 | Pfam | ABC transporter transmembrane region | 771 | 1039 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Cco10g1994 | 1359 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 113 | 400 | - | - | |
| Cco10g1994 | 1359 | Gene3D | - | 435 | 700 | IPR027417 | - | |
| Cco10g1994 | 1359 | MobiDBLite | consensus disorder prediction | 24 | 91 | - | - | |
| Cco10g1994 | 1359 | FunFam | ABC transporter B family member 1 | 100 | 435 | - | - | |
| Cco10g1994 | 1359 | Pfam | ABC transporter | 455 | 604 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cco10g1994 | 1359 | CDD | ABC_MTABC3_MDL1_MDL2 | 1092 | 1331 | - | - | |
| Cco10g1994 | 1359 | SMART | AAA_5 | 464 | 650 | IPR003593 | GO:0016887(InterPro) | |
| Cco10g1994 | 1359 | SMART | AAA_5 | 1119 | 1311 | IPR003593 | GO:0016887(InterPro) | |
| Cco10g1994 | 1359 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1083 | 1331 | IPR027417 | - | |
| Cco10g1994 | 1359 | FunFam | ABC transporter B family member 1 | 1082 | 1332 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco09g2064 | Cco-Chr9:35085103 | Cco10g1994 | Cco-Chr10:33466359 | 3.70E-298 | dispersed | |
| Cco10g1060 | Cco-Chr10:22739516 | Cco10g1994 | Cco-Chr10:33466359 | 6.60E-52 | dispersed | |
| Cco10g1994 | Cco-Chr10:33466359 | Cco10g1786 | Cco-Chr10:31466441 | 2.90E-14 | dispersed | |
| Cco01g0565 | Cco-Chr1:5574126 | Cco10g1994 | Cco-Chr10:33466359 | 7.40E-70 | transposed | |
| Cco01g1755 | Cco-Chr1:30329720 | Cco10g1994 | Cco-Chr10:33466359 | 6.30E-89 | transposed | |
| Cco02g0030 | Cco-Chr2:392371 | Cco10g1994 | Cco-Chr10:33466359 | 1.90E-17 | transposed | |
| Cco04g2200 | Cco-Chr4:35650615 | Cco10g1994 | Cco-Chr10:33466359 | 1.10E-289 | transposed | |
| Cco05g1787 | Cco-Chr5:26532914 | Cco10g1994 | Cco-Chr10:33466359 | 0.00E+00 | transposed | |
| Cco05g2841 | Cco-Chr5:36045288 | Cco10g1994 | Cco-Chr10:33466359 | 2.60E-67 | transposed | |
| Cco09g0118 | Cco-Chr9:1040550 | Cco10g1994 | Cco-Chr10:33466359 | 1.20E-276 | transposed | |
| Cco09g1181 | Cco-Chr9:11672306 | Cco10g1994 | Cco-Chr10:33466359 | 0.00E+00 | transposed | |
| Cco09g2035 | Cco-Chr9:34649838 | Cco10g1994 | Cco-Chr10:33466359 | 0.00E+00 | transposed | |
| Cco09g2214 | Cco-Chr9:36476655 | Cco10g1994 | Cco-Chr10:33466359 | 8.10E-278 | transposed | |
| Cco10g1877 | Cco-Chr10:32373221 | Cco10g1994 | Cco-Chr10:33466359 | 2.30E-57 | transposed | |
| Cco11g1107 | Cco-Chr11:21385259 | Cco10g1994 | Cco-Chr10:33466359 | 2.90E-282 | transposed | |
| Cco11g1372 | Cco-Chr11:26559946 | Cco10g1994 | Cco-Chr10:33466359 | 1.10E-294 | transposed | |
| Cco10g1994 | Cco-Chr10:33466359 | Cco02g2296 | Cco-Chr2:35488427 | 3.00E-07 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco10g1994 | K05658 | - | csv:101220974 | 2454.86 |