Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g2017 | ATGGCGAACAACGACATCGAAATCGGAGGTCGGGGTGCAGCATCGAGGAAGGACTATTTGGACCCGCTGCCGGCGCCGATGATCGACATGGAGGAGTTTACGAAATGGTCGTTTTACAGAGCTATCATTGCTGAATTTGTGGCGACTCTGTTGTTTCTATACGTCGCCGTTTTGACGGTGATCGGAAATAAAAGCCAGATGGACCCGCTGAACGGCGGGAATGTCTGCGGCGGAGTTGGCCCCGTCGGAATCTCGTGGGTCTTCGGCGGAATGATCTTCGTCCTCGTTTACTGCACCGCCGGTATCTCTGGAGGACACATAAATCCAGCAGTGACATTCGGAATGTTTATGGCAAGAAAGATATCGCTGGTCCGCGCCTTGCTCTACATCATAGCTCAGTGCTTGGGGGCGCTGTGCGGCTGCGCCTTGGTCAAGACACTCCAAAGGGATCGCTACAACCACTACGGCGGTGGCGCGAACCAGCTTGTCGATGGTTACAGCCGAGGCACCGGCCTTGCCGTCGAGATTATGGGCACCTTTGTTCTTCTCTACACCGTCTTCTCCGCCACTGATCCTAAACGTAATGCCAGAGACTCCCATGTTCCCGTCTTGGCACCACTCCCCATTGGCTTCGCTGTCTTCATGGTTCACCTCGCTACGATTCCCGTCACCGGCACTGGCATCAACCCGGCTCGAAGCTTCGGTGCCGCCGTCATCATCAATGATCGGAAAGTTTGGAAAGATCATTGGATTTTTTGGGTTGGGCCGCTGATCGGAGCAACCATTGCTGCAATGTATTATCAATATGTTCTTCGAGCCTCCGCCGTGAAAGCAATCGGATCTTTCAGAAGCTCGCCGCCAACTCGCTATTAA | 873 | 53.95 | MANNDIEIGGRGAASRKDYLDPLPAPMIDMEEFTKWSFYRAIIAEFVATLLFLYVAVLTVIGNKSQMDPLNGGNVCGGVGPVGISWVFGGMIFVLVYCTAGISGGHINPAVTFGMFMARKISLVRALLYIIAQCLGALCGCALVKTLQRDRYNHYGGGANQLVDGYSRGTGLAVEIMGTFVLLYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVIINDRKVWKDHWIFWVGPLIGATIAAMYYQYVLRASAVKAIGSFRSSPPTRY | 290 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 33662070 | 33665432 | + | CcPI632755_10g020170.1 | Cco10g2017 | 190975 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g2017 | 290 | CDD | MIP | 40 | 270 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco10g2017 | 290 | SUPERFAMILY | Aquaporin-like | 31 | 272 | IPR023271 | - | |
Cco10g2017 | 290 | PRINTS | Major intrinsic protein family signature | 210 | 232 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco10g2017 | 290 | PRINTS | Major intrinsic protein family signature | 250 | 270 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco10g2017 | 290 | PRINTS | Major intrinsic protein family signature | 88 | 112 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco10g2017 | 290 | PRINTS | Major intrinsic protein family signature | 125 | 144 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco10g2017 | 290 | PRINTS | Major intrinsic protein family signature | 40 | 59 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco10g2017 | 290 | PRINTS | Major intrinsic protein family signature | 174 | 192 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco10g2017 | 290 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 6 | 284 | IPR034294 | GO:0005886(PANTHER)|GO:0015250(PANTHER) | |
Cco10g2017 | 290 | FunFam | Probable aquaporin PIP1-2 | 25 | 286 | - | - | |
Cco10g2017 | 290 | NCBIfam | MIP family channel protein | 44 | 267 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco10g2017 | 290 | Pfam | Major intrinsic protein | 32 | 267 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco10g2017 | 290 | ProSitePatterns | MIP family signature. | 106 | 114 | IPR022357 | - | |
Cco10g2017 | 290 | Gene3D | Glycerol uptake facilitator protein. | 25 | 288 | IPR023271 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g1100 | Cco-Chr4:26426907 | Cco10g2017 | Cco-Chr10:33662070 | 1.80E-112 | dispersed | |
Cco10g1977 | Cco-Chr10:33302486 | Cco10g2017 | Cco-Chr10:33662070 | 2.10E-27 | dispersed | |
Cco10g2017 | Cco-Chr10:33662070 | Cco10g2174 | Cco-Chr10:34890411 | 5.10E-94 | dispersed | |
Cco10g2017 | Cco-Chr10:33662070 | Cco02g2263 | Cco-Chr2:35171958 | 1.40E-120 | wgd | |
Cco10g2017 | Cco-Chr10:33662070 | Cco04g1095 | Cco-Chr4:26391714 | 1.30E-76 | wgd | |
Cco10g2017 | Cco-Chr10:33662070 | Cco05g2361 | Cco-Chr5:32129236 | 9.60E-117 | wgd | |
Cco10g2017 | Cco-Chr10:33662070 | Cco08g0888 | Cco-Chr8:20756617 | 5.60E-117 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g2017 | K09872 | - | csv:101214142 | 551.977 |