Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g2030 ATGTCAAGTAATCCCTTTTCTCTTCTCTCTTCTACTACCACTGCAGCCTTTGCTCACCAGCACGATGATGCTAACCCTAACCCTAACCCTAAACCCAAACCCTCTGCTGCCGCAAAGAAGAAGAGAAACCTCCCCGGAACCCCAGATCCTGATGCGGAGGTTATTGCTTTGTCGCCAAAATCGCTCATGGCAACGAATAGATTCATATGCGAAATTTGTAACAAGGGGTTTCAGAGAGACCAAAATCTGCAACTTCATCGACGAGGGCATAACCTACCATGGAAGTTGAGACAACGGACAAACAAGGAGCCAATCAAGAAGAAGGTGTATATTTGCCCAGAGAAGACGTGCGTACACCACGATCCGTCACGAGCCCTCGGCGACCTCACTGGAATAAAGAAACATTTCAGCCGGAAACACGGCGAGAAGAAGTGGAAATGTGACAAATGTTCTAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAAACTTGTGGGACTAGAGAATATAAGTGTGATTGTGGAACCCTTTTTTCCAGGAAAGATAGCTTCATAACTCACAGAGCATTTTGTGATGCATTAGCTGAAGAAAGTGCAAGAATCACAACAGTTTCAGCGACAAATATTCTCAATAATCTTAGAAATGATTCAAATATTCTTCTTCATCAACAAGATCAATCTTTGATTGATCATCATACAAATAATAATCTTCCATCTCTTGGAGATATTTCTGGGCTTTCCCAATTCAGTCATTCAGATCATTTCTTGAGAGATTTTGAAGATCATCAACAGAAGAACAGATCTCCATTATCACTTTGGTTGAACCAAGCTTCAGCTGAAACTGCAATCAACAACAACAACAATAATATTTCCAACTTTTTTGGAGCTTCTTCTTCTTCTTCCAATCTTTTTGGATCGATCACCGAAAACGGGCTTTCGATGTTGCCGGTGATTGAGAAGGAAGATGCTGAGAATAAGGGAAGTAATAATTTGTCAAAAGCTACGTCGTCGTCCGCAGCGGCACTGTTGTCGGGTCAGTCTTCTCAGTCTGTGGTTTCGTCTTCTCCGATGTCGGCGACCGCCCTTCTACAAAAAGCGGCTCTTATGGGCTCAACTAGAAGCAGCAATAACAATTCCGCGCTCTTCGGTGCGGGTGCTTTCGGAGTAATGAGTTCTTCGTCGTCGTCGTCGTCCAATGCAGTAAGCTTGAACTCTCTTAATAAATCTAGAAGCTTGACAATGGCTGACTCGGTTCAGATGATCGGTACGAACTCCGACTTAAGCTCGAATTGTCTCAGCCAACTTCTAATACCACCCAATGGTAACAACGGTATGAGAAGTAGCGGTCAAACGAGGGACTTCCTCGGAGTCGGAGGAGGAGAAGCACCCCGACCGCCATTCCTTCCGCCGGAGCTAGCGAAATTCGCCGCCATAAACTCAACAATGGGACTAAGCCAGTTCGCCGCCAACCACTAA 1482 44.67 MSSNPFSLLSSTTTAAFAHQHDDANPNPNPKPKPSAAAKKKRNLPGTPDPDAEVIALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEPIKKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITTVSATNILNNLRNDSNILLHQQDQSLIDHHTNNNLPSLGDISGLSQFSHSDHFLRDFEDHQQKNRSPLSLWLNQASAETAINNNNNNISNFFGASSSSSNLFGSITENGLSMLPVIEKEDAENKGSNNLSKATSSSAAALLSGQSSQSVVSSSPMSATALLQKAALMGSTRSSNNNSALFGAGAFGVMSSSSSSSSNAVSLNSLNKSRSLTMADSVQMIGTNSDLSSNCLSQLLIPPNGNNGMRSSGQTRDFLGVGGGEAPRPPFLPPELAKFAAINSTMGLSQFAANH 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33714856 33717147 - CcPI632755_10g020300.1 Cco10g2030 190988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g2030 493 SUPERFAMILY beta-beta-alpha zinc fingers 67 165 IPR036236 -
Cco10g2030 493 Pfam Zinc finger, C2H2 type 68 90 IPR013087 -
Cco10g2030 493 Gene3D Classic Zinc Finger 120 202 - -
Cco10g2030 493 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 171 210 - -
Cco10g2030 493 FunFam protein indeterminate-domain 5, chloroplastic-like 123 202 - -
Cco10g2030 493 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 144 168 - -
Cco10g2030 493 SMART c2h2final6 145 165 IPR013087 -
Cco10g2030 493 SMART c2h2final6 110 140 IPR013087 -
Cco10g2030 493 SMART c2h2final6 68 90 IPR013087 -
Cco10g2030 493 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 90 IPR013087 -
Cco10g2030 493 MobiDBLite consensus disorder prediction 1 51 - -
Cco10g2030 493 FunFam protein indeterminate-domain 12-like 47 116 - -
Cco10g2030 493 MobiDBLite consensus disorder prediction 1 20 - -
Cco10g2030 493 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Cco10g2030 493 Gene3D Classic Zinc Finger 47 119 - -
Cco10g2030 493 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 462 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cco10g2030 493 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 106 140 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0236 Cco-Chr3:2521068 Cco10g2030 Cco-Chr10:33714856 8.90E-87 dispersed
Cco09g0065 Cco-Chr9:563250 Cco10g2030 Cco-Chr10:33714856 2.20E-87 dispersed
Cco09g0587 Cco-Chr9:5188438 Cco10g2030 Cco-Chr10:33714856 4.20E-80 dispersed
Cco11g0091 Cco-Chr11:1018161 Cco10g2030 Cco-Chr10:33714856 2.60E-85 transposed
Cco10g2030 Cco-Chr10:33714856 Cco04g1089 Cco-Chr4:26345648 1.40E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60186 PF12171 zf-C2H2_jaz 7.20E-05 CL0361 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g2030 K25870 - csv:101213422 759.985