Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g2031 ATGAGCGTGATCGACCTTTTGACCAGAGTAGATGCGATTTGCCAGAAGTACGACAAATATGACGTTGAAAAGCAGAGAGATCTCAATGTTTCCGGCGACGATGCCTTCGCTCGACTCTACGCCACTGTCGAAGCTGACATTGAAGCCGCTCTCCAGAAAGCGGAGGATGCTTCTAAAGAGAAGAATAGGGCATCGGTGGTGGCGTTGAATGCGGAGATTCGTCGTACCAAGGCGCGATTACTGGAGGAGATCCCCAAGTTGCAGAGATTGGCTGTAAAGAGGGTTAAAGGGCTATCGACCGAAGATCTTACCACTCGAAATGATTTGGTGCTTGCATTGCCAGAGAGGATTCAAGCTATACGAGATGGAACTGCGACTTCCACGAAGAATAATGGGGGTTGGACATCCTCAGCTTCGCGTGCTGAAATCAAATTTGACTCAGATGGGCGATTCGATGATGAGTACTTCCAACACACTGAGGAGTCAAGTCAGTTCAGGCAAGAGTATGAAATGCGGAAAATGAAGCAGGATCAAGGATTGGACATGATATCAGAAGGGTTAGATACTCTGAAGAACATGGCACATGATATGAATGAGGAAATAGATAGGCAAGTCCCTTTGATGGACGAGATTGACACTAAGGTGGACAAGGCTGCATCTGACCTTAAGAACACCAATGTTAGATTAAAAGACACAGTTAACCAGCTAAGGTCCAGCAGGAATTTCTGTATTGATATCATTCTGTTGTGTATAATCTTGGGGATTGCTGCCTATCTATACAATGTGTTGAAGAAGTGA 798 45.49 MSVIDLLTRVDAICQKYDKYDVEKQRDLNVSGDDAFARLYATVEADIEAALQKAEDASKEKNRASVVALNAEIRRTKARLLEEIPKLQRLAVKRVKGLSTEDLTTRNDLVLALPERIQAIRDGTATSTKNNGGWTSSASRAEIKFDSDGRFDDEYFQHTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEIDRQVPLMDEIDTKVDKAASDLKNTNVRLKDTVNQLRSSRNFCIDIILLCIILGIAAYLYNVLKK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33728695 33731684 - CcPI632755_10g020310.1 Cco10g2031 190989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g2031 265 Coils Coil 70 90 - -
Cco10g2031 265 CDD SNARE_Qc 175 230 - -
Cco10g2031 265 ProSitePatterns Syntaxin / epimorphin family signature. 176 215 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cco10g2031 265 Gene3D - 170 231 - -
Cco10g2031 265 Coils Coil 40 60 - -
Cco10g2031 265 Coils Coil 219 239 - -
Cco10g2031 265 SMART tSNARE_6 165 232 IPR000727 -
Cco10g2031 265 FunFam Putative syntaxin-71-like 170 231 - -
Cco10g2031 265 SUPERFAMILY SNARE fusion complex 163 230 - -
Cco10g2031 265 PANTHER SYNTAXIN 43 250 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cco10g2031 265 Pfam SNARE domain 207 256 IPR000727 -
Cco10g2031 265 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g2031 Cco-Chr10:33728695 Cco02g2256 Cco-Chr2:35124978 8.30E-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g2031 K08506 - csv:101215905 492.656