Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g2031 | ATGAGCGTGATCGACCTTTTGACCAGAGTAGATGCGATTTGCCAGAAGTACGACAAATATGACGTTGAAAAGCAGAGAGATCTCAATGTTTCCGGCGACGATGCCTTCGCTCGACTCTACGCCACTGTCGAAGCTGACATTGAAGCCGCTCTCCAGAAAGCGGAGGATGCTTCTAAAGAGAAGAATAGGGCATCGGTGGTGGCGTTGAATGCGGAGATTCGTCGTACCAAGGCGCGATTACTGGAGGAGATCCCCAAGTTGCAGAGATTGGCTGTAAAGAGGGTTAAAGGGCTATCGACCGAAGATCTTACCACTCGAAATGATTTGGTGCTTGCATTGCCAGAGAGGATTCAAGCTATACGAGATGGAACTGCGACTTCCACGAAGAATAATGGGGGTTGGACATCCTCAGCTTCGCGTGCTGAAATCAAATTTGACTCAGATGGGCGATTCGATGATGAGTACTTCCAACACACTGAGGAGTCAAGTCAGTTCAGGCAAGAGTATGAAATGCGGAAAATGAAGCAGGATCAAGGATTGGACATGATATCAGAAGGGTTAGATACTCTGAAGAACATGGCACATGATATGAATGAGGAAATAGATAGGCAAGTCCCTTTGATGGACGAGATTGACACTAAGGTGGACAAGGCTGCATCTGACCTTAAGAACACCAATGTTAGATTAAAAGACACAGTTAACCAGCTAAGGTCCAGCAGGAATTTCTGTATTGATATCATTCTGTTGTGTATAATCTTGGGGATTGCTGCCTATCTATACAATGTGTTGAAGAAGTGA | 798 | 45.49 | MSVIDLLTRVDAICQKYDKYDVEKQRDLNVSGDDAFARLYATVEADIEAALQKAEDASKEKNRASVVALNAEIRRTKARLLEEIPKLQRLAVKRVKGLSTEDLTTRNDLVLALPERIQAIRDGTATSTKNNGGWTSSASRAEIKFDSDGRFDDEYFQHTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEIDRQVPLMDEIDTKVDKAASDLKNTNVRLKDTVNQLRSSRNFCIDIILLCIILGIAAYLYNVLKK | 265 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 33728695 | 33731684 | - | CcPI632755_10g020310.1 | Cco10g2031 | 190989 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g2031 | 265 | Coils | Coil | 70 | 90 | - | - | |
Cco10g2031 | 265 | CDD | SNARE_Qc | 175 | 230 | - | - | |
Cco10g2031 | 265 | ProSitePatterns | Syntaxin / epimorphin family signature. | 176 | 215 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
Cco10g2031 | 265 | Gene3D | - | 170 | 231 | - | - | |
Cco10g2031 | 265 | Coils | Coil | 40 | 60 | - | - | |
Cco10g2031 | 265 | Coils | Coil | 219 | 239 | - | - | |
Cco10g2031 | 265 | SMART | tSNARE_6 | 165 | 232 | IPR000727 | - | |
Cco10g2031 | 265 | FunFam | Putative syntaxin-71-like | 170 | 231 | - | - | |
Cco10g2031 | 265 | SUPERFAMILY | SNARE fusion complex | 163 | 230 | - | - | |
Cco10g2031 | 265 | PANTHER | SYNTAXIN | 43 | 250 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
Cco10g2031 | 265 | Pfam | SNARE domain | 207 | 256 | IPR000727 | - | |
Cco10g2031 | 265 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 170 | 232 | IPR000727 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco10g2031 | Cco-Chr10:33728695 | Cco02g2256 | Cco-Chr2:35124978 | 8.30E-99 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g2031 | K08506 | - | csv:101215905 | 492.656 |