Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g2033 ATGGCGGCTAAGAACCATTTGAGCTTTATTCTTCTTGTTGTTCTTTTGCAGCTCTTCTATTCAGGAAGGGGGGAATTGCAAATTAATTATTATGCAAAAAGTTGCCCAAACGCTGAAGAAATTATAAAACAGCAAGTTGTTGATCTCTACTATGAACATGGAAACACTGCCGTTTCGTGGCTCAGAAATCTCTTCCATGATTGCGTTGTTAAGTCTTGCGATGCATCTTTATTATTGGACACAGTGGTGGGAGTGGAATCAGAGAAAGATTCAGACAGAAGTTTTGGGATGAGAAATTTCAAATACGTAAATAAGATCAAAGCTGCCGTTGAAAAAGAATGTCCTCTCACTGTTTCTTGTGCCGATATTGTTGCATTATCTGCTAGAGATGGCATAGTTATGTTAAAAGGGCCTCATATAGAGTTGAAAACAGGGAGAAGAGACAGCAAAGTGAGTTATTCAAATCTTGTTGAAGAGTTGGTTCCAAAGCACAATGAATCTCTTCTAAATGTTCTCTCCCGCTTTAACTCCATTGGCATTGACACTGAAGCAACTGTCGCTCTTTTAGGAGCCCACTCAGTAGGACGAGTCCACTGTGTAAACTTAGTGGAGAGATTATATCCAACCGTTGATCCAACCATTGATCCAGAATATGCAAAATACTTAAAACTTCGATGCCCAACGCCAAATCCTGATCCAAATGCAGTATTATATTCAAGAAACGACCGTAAAACTCCGATGATTTTGGATAATATGTACTATACTAATATACTCAAACACAAGGGGTTGCTCATAGTGGATCAAGAATTGGCTTCCAATCCTTTAACTTTACCTTATGTCAAGAAATTTGCTGCCGATAATCTCTATTTTCATGCCCAATTCTCCAGGGGAATTCGTTTGTTGTCTGAGAATAATCCCCTCACTGGAGATCAAGGTGAGATTAGGAAAGATTGTCGCTTTGTTAATTAA 969 38.8 MAAKNHLSFILLVVLLQLFYSGRGELQINYYAKSCPNAEEIIKQQVVDLYYEHGNTAVSWLRNLFHDCVVKSCDASLLLDTVVGVESEKDSDRSFGMRNFKYVNKIKAAVEKECPLTVSCADIVALSARDGIVMLKGPHIELKTGRRDSKVSYSNLVEELVPKHNESLLNVLSRFNSIGIDTEATVALLGAHSVGRVHCVNLVERLYPTVDPTIDPEYAKYLKLRCPTPNPDPNAVLYSRNDRKTPMILDNMYYTNILKHKGLLIVDQELASNPLTLPYVKKFAADNLYFHAQFSRGIRLLSENNPLTGDQGEIRKDCRFVN 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33747393 33751578 + CcPI632755_10g020330.1 Cco10g2033 190991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g2033 322 Pfam Peroxidase 43 286 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco10g2033 322 FunFam Peroxidase 29 172 - -
Cco10g2033 322 Gene3D - 29 322 - -
Cco10g2033 322 PRINTS Haem peroxidase superfamily signature 184 199 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco10g2033 322 PRINTS Haem peroxidase superfamily signature 242 257 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco10g2033 322 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco10g2033 322 PRINTS Haem peroxidase superfamily signature 118 135 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco10g2033 322 PRINTS Haem peroxidase superfamily signature 136 148 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco10g2033 322 ProSiteProfiles Plant heme peroxidase family profile. 25 322 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco10g2033 322 PANTHER - 10 322 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco10g2033 322 CDD secretory_peroxidase 25 321 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cco10g2033 322 FunFam Peroxidase 162 301 - -
Cco10g2033 322 PRINTS Plant peroxidase signature 98 111 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco10g2033 322 PRINTS Plant peroxidase signature 117 127 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco10g2033 322 PRINTS Plant peroxidase signature 183 195 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco10g2033 322 PRINTS Plant peroxidase signature 240 255 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco10g2033 322 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco10g2033 322 PRINTS Plant peroxidase signature 256 273 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco10g2033 322 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco10g2033 322 PRINTS Plant peroxidase signature 136 151 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco10g2033 322 SUPERFAMILY Heme-dependent peroxidases 25 322 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco10g2033 322 Gene3D Peroxidase, domain 2 162 301 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g2033 Cco-Chr10:33747393 Cco04g1755 Cco-Chr4:32544783 1.80E-55 dispersed
Cco03g0467 Cco-Chr3:4941868 Cco10g2033 Cco-Chr10:33747393 8.10E-104 transposed
Cco10g2033 Cco-Chr10:33747393 Cco04g1088 Cco-Chr4:26329248 2.50E-118 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g2033 K00430 - csv:101215428 598.586