Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g2034 ATGTTGAATTTCTCTCCAATTTCCTCATCCATTACCTTCACATTACTTCTTTTTTCCTTTTCCAATACTGGCATTTTAGATTTCACCGCCACCGTTGCCGCCGTTGAATTTGACTTCGGCACTGTCGCCCTCAGTAGTTTAAAGCTACTCGGCGATGCCCACTTGAACAACGGGAGCGTGAGGCTCACTCGAGACCTTGCCGTCCCAAATTCCGGCTCCGGCAGAGTCCTCTACGGCAAACCCATCAGATTCCGCCAGCCAGGGATTAATTACCTCGCCAGTTTCTCCACATTTTTCTCCTTCTCCGTCACTAATCTCAACCCGTCGTCGATCGGTGGTGGTTTGGCGTTCGTGATATCTCCAGACGCCGAAACGCTCGGCGGCGCTGGTGGGTTGTTGGGGCTGGCCGATGAGAGGGGATTGGGGTTCGTGGCGGTGGAATTCGACACGTTAATGGATGTGGAATTTAAAGACATTAATGGAAACCATGTGGGATTGGATCTGAATGAAATGGTTTCGTCAGAGGTTAAAGATCTTGACGGAATTGGAATCGATCTCAAAAGCGGCGATACCGTTAATTCGTGGATTGAATACGACGGGTTGGCTCGGATCTTCAAAATCTTCGTTTCTTATTCGAATTTGAAACCGACAGAACCTCTAATGTCGTTCAATCTCGATCTTGATCCGTATTTGAACGATTTTATGTACGTTGGATTTTCCGGTTCAACACAGGGGAGTACGGAAGTTCACAGTGTGGACTGGTGGAGCTTTACGTCGTCGTTTGACTCAAATTCACCACCTGGGTCGGCTCCGCCGCCGCCAACGACGACGCTGATGAACCCAACGGCGAATGTCGTTCGTTCACCGCCGCCGTCGCAACCGCCATCGGATTCAGATTCCGTCACGCAAAAGAACTCCAAGTCGACGTCCTGCCACAATGGGCTCTGTAAGCAAGGCGCTGGTGCAGTGGTCGGAGTTGTGACCGCGGGGGCTTTTGTTCTAGCATTATTTGCCGGCGGGTTAATTTGGGTATATTCCAAAAAGATCAAGCGGGTTAAAAAATCGGATTCCCTCGCTTCAGAAATCATCAAAATGCCTAAGGAATTCACATACAAGGAGCTCAAAATCGCTACCAAATGCTTCAATTCGAACAGAATCATCGGCCATGGCGCTTTTGGGACTGTTTATAAAGGGATTCTGCCGGAGACCGGCGACATTGTGGCGGTGAAACGGTGTAGCCATATGCAAATGTTAATCGGCGATGCGGAGATTCCGATCGTCCCTCGGTCTAAGCCGTCAACGAGCTTCAGTACTGCTCATTTGCTTCTCACTTTACAAGACAGCGTGTCCGATCTCAACGGCATGATCGCCATTTCCACTTCCTCGTCCGAGCACAGCTTCAAGGGCGAGGATTTAATCTCACTGGATGATCGGACGGCGGGAAATCCATCAATTGTTTGA 1461 49.69 MLNFSPISSSITFTLLLFSFSNTGILDFTATVAAVEFDFGTVALSSLKLLGDAHLNNGSVRLTRDLAVPNSGSGRVLYGKPIRFRQPGINYLASFSTFFSFSVTNLNPSSIGGGLAFVISPDAETLGGAGGLLGLADERGLGFVAVEFDTLMDVEFKDINGNHVGLDLNEMVSSEVKDLDGIGIDLKSGDTVNSWIEYDGLARIFKIFVSYSNLKPTEPLMSFNLDLDPYLNDFMYVGFSGSTQGSTEVHSVDWWSFTSSFDSNSPPGSAPPPPTTTLMNPTANVVRSPPPSQPPSDSDSVTQKNSKSTSCHNGLCKQGAGAVVGVVTAGAFVLALFAGGLIWVYSKKIKRVKKSDSLASEIIKMPKEFTYKELKIATKCFNSNRIIGHGAFGTVYKGILPETGDIVAVKRCSHMQMLIGDAEIPIVPRSKPSTSFSTAHLLLTLQDSVSDLNGMIAISTSSSEHSFKGEDLISLDDRTAGNPSIV 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33759257 33761434 + CcPI632755_10g020340.1 Cco10g2034 190992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g2034 486 ProSitePatterns Legume lectins beta-chain signature. 144 150 IPR019825 -
Cco10g2034 486 SUPERFAMILY Concanavalin A-like lectins/glucanases 34 266 IPR013320 -
Cco10g2034 486 FunFam L-type lectin-domain containing receptor kinase VIII.1 33 270 - -
Cco10g2034 486 Gene3D - 32 269 - -
Cco10g2034 486 ProSitePatterns Protein kinases ATP-binding region signature. 387 410 IPR017441 GO:0005524(InterPro)
Cco10g2034 486 PANTHER CONCANAVALIN A-LIKE LECTIN FAMILY PROTEIN 13 320 IPR050258 -
Cco10g2034 486 Pfam Legume lectin domain 36 264 IPR001220 GO:0030246(InterPro)
Cco10g2034 486 MobiDBLite consensus disorder prediction 262 308 - -
Cco10g2034 486 SUPERFAMILY Protein kinase-like (PK-like) 356 415 IPR011009 -
Cco10g2034 486 CDD lectin_legume_LecRK_Arcelin_ConA 35 261 IPR001220 GO:0030246(InterPro)
Cco10g2034 486 Gene3D Phosphorylase Kinase; domain 1 350 426 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0429 Cco-Chr10:5065480 Cco10g2034 Cco-Chr10:33759257 1.20E-56 dispersed
Cco10g2034 Cco-Chr10:33759257 Cco10g2120 Cco-Chr10:34452961 3.20E-40 dispersed
Cco10g2027 Cco-Chr10:33702384 Cco10g2034 Cco-Chr10:33759257 9.40E-16 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g2034 - - - 0.0