Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g2049 ATGGAGCTAGCGTTCTCAGACTTCAACATTCCTGGAGATATCTTGGATTTATACTTCCCCCGAACTGTCTTCACTGTCGAAAATGGATGGCTTAACCTCATTTCTCAGCTCATTTTATTTTTTTCTTCTCCGGCAGGTCGACATCTCTCTTCACAGGCTATCGATGATGGTCGTGGCATCTTTATTTTGTCATTCGACTTTCAACAGTTCCGGAAGATTTGCGATCAACATGAGTTTTACATAATGCTAGAGGAAAATCCTAAAGTTGCTCTCAGATGTATGAGTGCTGCAATTCATCAGGTAATGAGGACCAAGTGGGCGAACAATTTAGAAGATGTCACAAAAATTCTAGTCCGATTGCACAACTATTCAGAATCTATGCTTGCTTTGAAGAACTTGAAGGCCGCATATATTGACAAGCTGGTATCAGTGCGTGGTACTGTTGTTAAAGTTAGCACTGTCAAGCCTTTGGTTGTGCAAATGAGCTTTGATTGTGCTAAATGTAAAAGCAATATTACACGCATCTTTCCTGATGGTAAGTTTTCACCTCCATCGTTTTGTGAGTTGGATGGTTGTAAAAGCAAAACATTCAATCCTGTTCGATCGACCGCTGAAGCAATTGACTTTCAAAAAATACGATTGCAAGAACTCACTAAATCTGATGATCATGAAGAAGGCAGGGTGCCTCGAACTGTAGAATGTGAATTGACTGAAGATCTAGTTGACGCATGCATCCCTGGAGATGTTGTCACTGTTACTGGAATTATAAGAGTAATTAATAATTATATGGATATTGGAGGAGGAAAATCGAAGAGCAAAAACCAAGGATTTTACTATTTGTATTTGGAGGCCGTTTCAATAAAAAATTCCAAGTCACAATCTACACCTGAGGAGTTGCAAGATTCTAACTCAAATGCAAGAGCAACCGAGTTGCTTGATTTATTCTCATTCTCCCCACGAGATTTGGAATTTATTGTGAAATTTTCTGGGGAATGTGGTTCAGATGTCTTCCGTCAAATTCTTCAATCCATTTGTCCATCCATCTATGGACATGAACTTGTTAAAGCGGGAATAACACTAGCACTATTTGGTGGTGTACGAAAGCATTCAAAAGACCAGAATAAAGTTCCTGTTAGAGGGGATATTCATGTCATAGTTGTTGGTGATCCTGGACTTGGAAAAAGTCAACTCCTGCAAGCGGCTGCAGCTGTTTCTCCTCGTGGTATTTATGTTTGTGGTAATGCAACAACCAAGGCCGGCCTAACTGTAGCTGTTGTGAGGGATTCCATGACAAATGACTATGCTTTTGAGGCTGGGGCTATGGTACTTGCAGATAGTGGATTATGTTGTATAGATGAGTTCGATAAAATGTCTGCAGAACATCAGGCCCTACTGGAAGCGATGGAACAACAATGTGTGTCAATTGCAAAAGCTGGACTGGTAGCAAGTCTATCAGCACGCACTTCTATTTTAGCTGCAGCTAACCCTGTTGGTGGTCATTACAACCGGGCAAAAACTGTGAATGAAAACTTGAAGATGAGTGCCGCTCTTCTCTCGAGGTTTGATTTAGTTTTTATATTGCTGGATAAACCTGACGAATTTCTGGATAAGAGAGTCTCAGAGCACATCATGTCGCTTCATGCTGGATGTGGGGAACGCGCCTCTGCAGCAAAAGGACTACGTAAAGATATATCTCCTTTAACTTTAAAGAATGTAGCAATGGAGAATGATGGAAAAGGAGGTGCTGGTTCAAAACATGAGTCTTTAGTTTCAAGACTGAGATTGGACAAAGCGAAATATGGTGATTTTGTGCCATTACCAGGTCAACTTCTTCGCAAGTATATAGCCTATGCAAGAACTTTTGTATTCCCCAGGATGTCAAAGCCCGCAGCAGACATCTTGCAAAAATTTTATTTACAACTGCGTGACCAGAATACATCAGCAGATGGTACACCAATTACAGCAAGGCAATTGGAAAGTTTGGTGAGGTTGGCAGAAGCTCGAGCACGGGTAGACCTCAGAGAAGAAATTACAGTACAAGATGCCATGGATGTGGTGGAAATAATGAAGGAATCCCTTTATGACAAGTATGTAGATGAACATGGGGTCCTGGATTTTGGTCGAAGTGGGGGAATGAGTCAACAGAAAGAAGCCAAGCGATTTCTGAGTGCACTCAACAAGCAATCAGAGTCACAGCAGAAAGACTGTTTCTCTATCTCGGAAATATATAGCTTGGCAGATAAAATTGGTCTACGAGTACCTGACATCGATACCTTCATAGAAAATCTCAACAGTGTTGGATATCTGCTTAAGAAGGGGCCAAAGACATACCAGGCTAGAGATGGCTCTTCCACAATACCAAGCATGTATTATTCGTTGATGCTGATTGCATAG 2394 41.23 MELAFSDFNIPGDILDLYFPRTVFTVENGWLNLISQLILFFSSPAGRHLSSQAIDDGRGIFILSFDFQQFRKICDQHEFYIMLEENPKVALRCMSAAIHQVMRTKWANNLEDVTKILVRLHNYSESMLALKNLKAAYIDKLVSVRGTVVKVSTVKPLVVQMSFDCAKCKSNITRIFPDGKFSPPSFCELDGCKSKTFNPVRSTAEAIDFQKIRLQELTKSDDHEEGRVPRTVECELTEDLVDACIPGDVVTVTGIIRVINNYMDIGGGKSKSKNQGFYYLYLEAVSIKNSKSQSTPEELQDSNSNARATELLDLFSFSPRDLEFIVKFSGECGSDVFRQILQSICPSIYGHELVKAGITLALFGGVRKHSKDQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVRDSMTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQALLEAMEQQCVSIAKAGLVASLSARTSILAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDEFLDKRVSEHIMSLHAGCGERASAAKGLRKDISPLTLKNVAMENDGKGGAGSKHESLVSRLRLDKAKYGDFVPLPGQLLRKYIAYARTFVFPRMSKPAADILQKFYLQLRDQNTSADGTPITARQLESLVRLAEARARVDLREEITVQDAMDVVEIMKESLYDKYVDEHGVLDFGRSGGMSQQKEAKRFLSALNKQSESQQKDCFSISEIYSLADKIGLRVPDIDTFIENLNSVGYLLKKGPKTYQARDGSSTIPSMYYSLMLIA 797
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33865033 33871608 + CcPI632755_10g020490.1 Cco10g2049 191007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g2049 797 Pfam MCM OB domain 130 259 IPR033762 -
Cco10g2049 797 Gene3D - 157 207 - -
Cco10g2049 797 Gene3D - 130 260 IPR012340 -
Cco10g2049 797 Gene3D - 314 702 IPR027417 -
Cco10g2049 797 SUPERFAMILY Nucleic acid-binding proteins 59 260 IPR012340 -
Cco10g2049 797 Pfam MCM P-loop domain 334 547 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cco10g2049 797 SMART AAA_5 380 532 IPR003593 GO:0016887(InterPro)
Cco10g2049 797 PRINTS Mini-chromosome maintenance (MCM) protein family signature 517 525 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cco10g2049 797 PRINTS Mini-chromosome maintenance (MCM) protein family signature 379 394 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cco10g2049 797 PRINTS Mini-chromosome maintenance (MCM) protein family signature 466 479 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cco10g2049 797 PRINTS Mini-chromosome maintenance (MCM) protein family signature 490 502 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cco10g2049 797 PRINTS Mini-chromosome maintenance (MCM) protein family signature 439 453 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cco10g2049 797 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 346 699 IPR027417 -
Cco10g2049 797 CDD MCM8 340 692 - -
Cco10g2049 797 Coils Coil 451 471 - -
Cco10g2049 797 Pfam MCM AAA-lid domain 610 693 IPR041562 -
Cco10g2049 797 CDD MCM8_WHD 715 778 - -
Cco10g2049 797 ProSiteProfiles MCM family domain profile. 336 543 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cco10g2049 797 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 63 772 IPR031327 GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)
Cco10g2049 797 SMART mcm 126 694 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cco10g2049 797 FunFam DNA helicase MCM8 isoform X1 157 208 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g2049 Cco-Chr10:33865033 Cco11g0380 Cco-Chr11:3789584 4.00E-72 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g2049 K10737 - csv:101211972 1459.89