Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g2051 ATGGCTGATGCTCCGGCGAGTCCCGGCGGAGGAAGCCATGAGAGCGGCGAGCAGAGTCCGAGGTCTAATGTTCGTGAACAGGATAGGTTTCTTCCTATTGCGAATATTAGCAGGATCATGAAGAAGGCTCTTCCTGCTAATGGGAAGATTGCTAAAGATGCTAAAGAAACCGTACAAGAATGTGTATCGGAGTTTATCAGTTTTATTACCAGCGAGGCAAGTGATAAATGTCAAAGAGAGAAACGGAAGACGATTAATGGAGATGATTTACTTTGGGCCATGGCCACTCTTGGATTTGAGGATTATATCGATCCACTTAAAACCTACTTGACGAAATACAGAGAGGGTGACACTAAGGGGTCTGCTAAAGGTGGTGATGCGTCAGCTAAGAAAGAAGCTCATTCAACCCCTATTTCTCAGATTGCTCATCAAGGGTCGCTTTCCCAAGGAGTTAATTATGCAAGTTCTCAATCACAAGCCCAGCATCTGATGGTCCCTATGCAAGAAACAGTTGAAACTTTGTATATCAAGGCTGTCTATTGGATTGGAGTTAGGACACAGTATTTGATAGAGGTTCCAAGTCCTGGGGATCATATTCGTGACTTTGTAAACCTTACAACCTTGGCAAGGAATGATTTGCTTCTAGAAGTTCTGAAATGA 660 43.64 MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYREGDTKGSAKGGDASAKKEAHSTPISQIAHQGSLSQGVNYASSQSQAQHLMVPMQETVETLYIKAVYWIGVRTQYLIEVPSPGDHIRDFVNLTTLARNDLLLEVLK 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33891831 33895020 - CcPI632755_10g020510.1 Cco10g2051 191009

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g2051 219 FunFam Nuclear transcription factor Y subunit B-3 19 143 - -
Cco10g2051 219 SUPERFAMILY Histone-fold 27 126 IPR009072 GO:0046982(InterPro)
Cco10g2051 219 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Cco10g2051 219 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Cco10g2051 219 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Cco10g2051 219 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 14 159 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Cco10g2051 219 MobiDBLite consensus disorder prediction 1 28 - -
Cco10g2051 219 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g2051 219 Gene3D Histone, subunit A 17 164 IPR009072 GO:0046982(InterPro)
Cco10g2051 219 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g2051 K08065 - - csv:101212699 329.331
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1012 Cco-Chr2:12859534 Cco10g2051 Cco-Chr10:33891831 2.20E-43 transposed
Cco03g1766 Cco-Chr3:32350393 Cco10g2051 Cco-Chr10:33891831 8.70E-25 transposed
Cco07g1001 Cco-Chr7:22986281 Cco10g2051 Cco-Chr10:33891831 1.70E-41 transposed
Cco10g0413 Cco-Chr10:4919341 Cco10g2051 Cco-Chr10:33891831 4.70E-42 transposed
Cco10g0431 Cco-Chr10:5087489 Cco10g2051 Cco-Chr10:33891831 1.10E-33 transposed
Cco10g2051 Cco-Chr10:33891831 Cco02g1497 Cco-Chr2:27515262 8.20E-60 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco10g0431 . 13 177 CCAAT-HAP3 Transcription Factor Family AT5G47670 61.2 9.1e-49 190.7
Cco02g1012 . 6 117 CCAAT-HAP3 Transcription Factor Family AT5G47670 60.7 7.2e-38 154.5
Cco10g0413 . 6 127 CCAAT-HAP3 Transcription Factor Family AT5G47670 56.6 6.1e-37 151.4
Cco10g0431 . 37 199 CCAAT-HAP3 Transcription Factor Family AT1G21970 61.1 4.4e-51 198.4
Cco07g1001 . 9 137 CCAAT-HAP3 Transcription Factor Family AT1G21970 52.6 2.1e-37 152.9
Cco02g1012 . 1 128 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.0 1.4e-56 216.1
Cco10g0413 . 1 151 CCAAT-HAP3 Transcription Factor Family AT4G14540 67.8 1.1e-50 196.4
Cco07g1001 . 28 134 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.1 5.9e-47 184.1
Cco10g2051 . 22 115 CCAAT-HAP3 Transcription Factor Family AT4G14540 87.2 1.3e-43 172.9
Cco02g1497 . 397 510 CCAAT-HAP3 Transcription Factor Family AT4G14540 71.1 3.0e-43 171.8
Cco09g0586 . 44 139 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.9 1.9e-37 152.5
Cco02g1497 . 384 500 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.5 5.9e-49 190.7
Cco10g2051 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.1 3.0e-48 188.3
Cco02g1012 . 1 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.8 1.4e-42 169.5
Cco10g0413 . 8 110 CCAAT-HAP3 Transcription Factor Family AT2G38880 73.8 2.7e-41 165.2
Cco07g1001 . 15 121 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.0 3.5e-41 164.9
Cco09g0586 . 32 135 CCAAT-HAP3 Transcription Factor Family AT2G38880 69.8 1.2e-38 156.4
Cco09g0586 . 42 139 CCAAT-HAP3 Transcription Factor Family AT2G47810 84.7 1.0e-43 173.3
Cco10g0413 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G47810 76.0 1.5e-39 159.5
Cco02g1012 . 18 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 5.8e-39 157.5
Cco07g1001 . 31 139 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.9 4.9e-38 154.5
Cco10g2051 . 1 170 CCAAT-HAP3 Transcription Factor Family AT2G37060 74.3 3.4e-61 231.5
Cco02g1497 . 390 549 CCAAT-HAP3 Transcription Factor Family AT2G37060 71.3 4.8e-55 211.1
Cco02g1012 . 6 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.6 1.3e-44 176.4
Cco07g1001 . 30 135 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.6 3.9e-41 164.9
Cco10g0413 . 2 113 CCAAT-HAP3 Transcription Factor Family AT2G37060 70.8 3.9e-41 164.9
Cco09g0586 . 43 145 CCAAT-HAP3 Transcription Factor Family AT2G37060 68.9 7.7e-37 150.6
Cco07g1001 . 18 132 CCAAT-HAP3 Transcription Factor Family AT2G13570 75.0 2.1e-44 176.0
Cco02g1012 . 22 123 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 3.6e-44 175.3
Cco10g2051 . 7 120 CCAAT-HAP3 Transcription Factor Family AT2G13570 69.7 1.3e-41 166.8
Cco10g0413 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G13570 80.2 2.2e-41 166.0
Cco02g1497 . 410 504 CCAAT-HAP3 Transcription Factor Family AT2G13570 74.7 2.7e-39 159.1
Cco09g0586 . 20 144 CCAAT-HAP3 Transcription Factor Family AT2G13570 63.2 2.7e-39 159.1
Cco02g1012 . 1 132 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.5 4.2e-52 201.4
Cco10g0413 . 1 117 CCAAT-HAP3 Transcription Factor Family AT5G47640 82.3 1.0e-50 196.8
Cco07g1001 . 26 131 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.2 8.4e-45 177.2
Cco02g1497 . 410 520 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.8 6.0e-43 171.0
Cco10g2051 . 11 124 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.1 5.1e-42 167.9
Cco09g0586 . 44 140 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.3 1.2e-38 156.8
Cco10g2051 . 12 170 CCAAT-HAP3 Transcription Factor Family AT3G53340 72.9 1.4e-57 219.5
Cco02g1497 . 395 548 CCAAT-HAP3 Transcription Factor Family AT3G53340 70.8 8.3e-55 210.3
Cco02g1012 . 6 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.7 2.7e-45 178.7
Cco10g0413 . 6 113 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.4 1.4e-41 166.4
Cco07g1001 . 19 123 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.3 6.8e-41 164.1
Cco09g0586 . 43 145 CCAAT-HAP3 Transcription Factor Family AT3G53340 69.9 1.6e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000266 8 6 6 8 9 3 3 3 3 2 3 3 6 4 4 6 3 10 6 3 4 4 4 3 4 3 2 16 9 4 152
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60188 PF00808 CBFD_NFYB_HMF 1.30E-27 CL0012 Cco TF