Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g2051 ATGGCTGATGCTCCGGCGAGTCCCGGCGGAGGAAGCCATGAGAGCGGCGAGCAGAGTCCGAGGTCTAATGTTCGTGAACAGGATAGGTTTCTTCCTATTGCGAATATTAGCAGGATCATGAAGAAGGCTCTTCCTGCTAATGGGAAGATTGCTAAAGATGCTAAAGAAACCGTACAAGAATGTGTATCGGAGTTTATCAGTTTTATTACCAGCGAGGCAAGTGATAAATGTCAAAGAGAGAAACGGAAGACGATTAATGGAGATGATTTACTTTGGGCCATGGCCACTCTTGGATTTGAGGATTATATCGATCCACTTAAAACCTACTTGACGAAATACAGAGAGGGTGACACTAAGGGGTCTGCTAAAGGTGGTGATGCGTCAGCTAAGAAAGAAGCTCATTCAACCCCTATTTCTCAGATTGCTCATCAAGGGTCGCTTTCCCAAGGAGTTAATTATGCAAGTTCTCAATCACAAGCCCAGCATCTGATGGTCCCTATGCAAGAAACAGTTGAAACTTTGTATATCAAGGCTGTCTATTGGATTGGAGTTAGGACACAGTATTTGATAGAGGTTCCAAGTCCTGGGGATCATATTCGTGACTTTGTAAACCTTACAACCTTGGCAAGGAATGATTTGCTTCTAGAAGTTCTGAAATGA 660 43.64 MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYREGDTKGSAKGGDASAKKEAHSTPISQIAHQGSLSQGVNYASSQSQAQHLMVPMQETVETLYIKAVYWIGVRTQYLIEVPSPGDHIRDFVNLTTLARNDLLLEVLK 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33891831 33895020 - CcPI632755_10g020510.1 Cco10g2051 191009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g2051 219 FunFam Nuclear transcription factor Y subunit B-3 19 143 - -
Cco10g2051 219 SUPERFAMILY Histone-fold 27 126 IPR009072 GO:0046982(InterPro)
Cco10g2051 219 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Cco10g2051 219 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Cco10g2051 219 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Cco10g2051 219 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 14 159 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Cco10g2051 219 MobiDBLite consensus disorder prediction 1 28 - -
Cco10g2051 219 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g2051 219 Gene3D Histone, subunit A 17 164 IPR009072 GO:0046982(InterPro)
Cco10g2051 219 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1012 Cco-Chr2:12859534 Cco10g2051 Cco-Chr10:33891831 2.20E-43 transposed
Cco03g1766 Cco-Chr3:32350393 Cco10g2051 Cco-Chr10:33891831 8.70E-25 transposed
Cco07g1001 Cco-Chr7:22986281 Cco10g2051 Cco-Chr10:33891831 1.70E-41 transposed
Cco10g0413 Cco-Chr10:4919341 Cco10g2051 Cco-Chr10:33891831 4.70E-42 transposed
Cco10g0431 Cco-Chr10:5087489 Cco10g2051 Cco-Chr10:33891831 1.10E-33 transposed
Cco10g2051 Cco-Chr10:33891831 Cco02g1497 Cco-Chr2:27515262 8.20E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60188 PF00808 CBFD_NFYB_HMF 1.30E-27 CL0012 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g2051 K08065 - csv:101212699 329.331