Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g2052 ATGGACGCCAAGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTTCTCTTTCTGTTAGACGTCTCCTTTTCTCAGATGCCAGGTTTTGTGAGTTTGGACTGTGGAGGTCAAGAAAGTTTCACTGATGATATTGGTCTGGAGTGGGTTCCAGATACTCAAGTTCGTTTTGGAGAAGCAATTAACATTTCTGTTGCAAATGAGACAAGGAAGCAATATATGACTTTAAGACACTTTCCTGCTGATTCCAGGAAGTACTGTTACTCACTCAATGTCACTAGTAGAACACGTTACCTTCTCAGAGCAACATTTTTATATGGCAACTTCGACAATAACAACGTGTATCCAAAATTTGACATTTCCCTTGGGGCAACTCACTGGGCAACAATTGTCGTATCTGACGCCAACACTATCGAGGTTCGAGAGCTCATATTTCTGGCTTCCACTCCTACTGTAAGCGTTTGTTTGTCAAATGCTACAACTGGACAGCCATTCATATCCACGCTTGAGCTTCGGCAATTTAATGGCTCTATCTACTATACTGAATTTGAGGATCAGTTTTACCTGAGTGTCTCAGCAAGGATTAATTTTGGAGCAGATTCCGAAGCTCCAGTAAGGTATCCTGATGATCCATTTGACCGGATATGGGAGTCGGACTCTGTGAGAAAAGCAAATTACCTTGTTGATGTTGCTGCTGGTACAGAAAAAGTTTCCACTAAATTACCGATAGATGTTGATAGAGATGAAAGACCACCTCAAAAAGTAATGCAGACAGCTGTAGTTGGCAGAAATGGTTCATTAACTTACCGGTTAAATTTGGATGGTTTTCCTGGCTTTGGATGGGCAGTCACCTACTTTGCAGAAATTGAAGACTTGGGTCCAACTGATACAAGAAAATTCAGGCTTGTACTTCCCGGAATGCCTGATATCAGCAAAGCTGTAGTCAACATTGAAGAAAATGCTCAAGGAAAATATCGGCTTTACGAGCCTGGTTTTACCAACTTAACCTTGCCTTTTGTATTATCTTTTCGGTTTGGGAAAACATCAGATTCTTCATTGGGACCTCTGTTAAATGCTATGGAGATTAACAAGTATCTTGAAAAAAGTGATGGTTCTCTAGATGGAGCAGTTGTTGCTAGTGTAATTTCAAAATTTTCATCTTCAGATTGGGATGAAGGTGGTGATCCATGCATGCCAGTTCCTTGGTCATGGTTGCAATGTAACTCTGATCCACGGCCAAGAATAGTTAAAATTTCATTGTCCAAAAAGAATTTGACGGGGAACATCCCTACAGACCTTGCAAAGTTGAGCGGTTTAGTTGAATTATGGCTTGATGGAAATTCATTTGTTGGTCCTATACCCGATTTTACTGGATGCGTGGACTTGAAAATCCTCCATCTTGAGAACAACCAGTTGACTGGAGAGCTACCTTCCTCTTTAGCAAATCTACCAAATTTACGGGAGCTGTATGTGCAGAATAACATGTTATCTGGAACAGTGCCCTCTGGTCTTCTCAATAAAAACCTAGTTTTTGACTACTCTGGAAACATTAATCTTCACGAAGGGGGAAAAAAAAACCACGTTTATATCATTGTGGGTTCAGTAATTGGTGCTGTTGTCCTGCTGTTGGCTACTGTGGTATCTTGCTACTTCTTGCAAAAAGGAAGAAAACGATATCGTGAACAAGATCTACTTGAAGAATCATCCTTGCCCGTACAAAGATTTGCCTCTTCAAAGGGTGATACCCCCAAGGAAACCGCACATTGCTTCAGTGTTATTGAAATTGTAGAAGCAACAAGAGATTTTGAAAGAAAAATTGGGTCTGGAGGTTTTGGTGTTGTATACTACGGGAAATTAAATGACGGAAAAGAAATTGCAGTTAAAGTTTTGACTAGTAATTCCTTTCAGGGAAGACGAGAATTTGCAAACGAGGTGACTCTTCTTTCAAGGATTCATCACAGAAATCTTGTACAATTTCTGGGATATTCTCAAGAACAGGACAGAAGTATGCTTGTCTATGAGTTCATGCATAATGGAACTCTCAAAGAACATCTTTATGGTCCACTAACACGGGAAAAAACTATCAGTTGGATAAAGCGCCTCGAGATTGCTGAGGATGCTGCTAGAGGGATTGAGTACCTTCATACAGGCTGTATTCCAGCAATCATTCATAGGGACTTGAAAAGCAGTAATATTCTTCTTGACAGGCACATGAAAGCAAAGGTTTCAGACTTTGGCCTCTCGAAGCTTGCGGTGGATGGCGCCTCCCATGTGTCCAGCATCGTTCGGGGAACTGTAGGATATTTGGACCCAGAGTATTATATCTCTCAGCAGTTAACAGACAAGAGCGATGTATATAGTTTTGGCGTTATTCTTCTCGAGTTGATATCTGGTCAAGAAGCTATATCTAATGTAAACTTTGGTGTTAATTGCCGCAACATCGTCCAGTGGGCAAAATTACACATTGAGAGCGGGGACATTCAAGGGATCATCGATCCGTCACTGCGCAATGAATATGACATTCAATCAATGTGGAAAATCGCAGAGAAAGCCTTGATGTGTGTCCAGCCACATGGGCACCTTAGGCCATCCATATCTGAAGTGCTGAAGGAGATTCAGGATTCAATTTTGATTGAAAGGGAAGCTACTGCAACTAGAGAAGGTAACTCTGATGACATGTCTAGAAACTCAGTCCATTCCATGAATATGGGATCTCTTGATTTGTGTGGAAACGAAAACTACGTGTCGTTTGACGAGTCCATTGCTCGACCTACTGCAAGGTAG 2778 41.36 MDAKLLLLLLLLLLLFLLDVSFSQMPGFVSLDCGGQESFTDDIGLEWVPDTQVRFGEAINISVANETRKQYMTLRHFPADSRKYCYSLNVTSRTRYLLRATFLYGNFDNNNVYPKFDISLGATHWATIVVSDANTIEVRELIFLASTPTVSVCLSNATTGQPFISTLELRQFNGSIYYTEFEDQFYLSVSARINFGADSEAPVRYPDDPFDRIWESDSVRKANYLVDVAAGTEKVSTKLPIDVDRDERPPQKVMQTAVVGRNGSLTYRLNLDGFPGFGWAVTYFAEIEDLGPTDTRKFRLVLPGMPDISKAVVNIEENAQGKYRLYEPGFTNLTLPFVLSFRFGKTSDSSLGPLLNAMEINKYLEKSDGSLDGAVVASVISKFSSSDWDEGGDPCMPVPWSWLQCNSDPRPRIVKISLSKKNLTGNIPTDLAKLSGLVELWLDGNSFVGPIPDFTGCVDLKILHLENNQLTGELPSSLANLPNLRELYVQNNMLSGTVPSGLLNKNLVFDYSGNINLHEGGKKNHVYIIVGSVIGAVVLLLATVVSCYFLQKGRKRYREQDLLEESSLPVQRFASSKGDTPKETAHCFSVIEIVEATRDFERKIGSGGFGVVYYGKLNDGKEIAVKVLTSNSFQGRREFANEVTLLSRIHHRNLVQFLGYSQEQDRSMLVYEFMHNGTLKEHLYGPLTREKTISWIKRLEIAEDAARGIEYLHTGCIPAIIHRDLKSSNILLDRHMKAKVSDFGLSKLAVDGASHVSSIVRGTVGYLDPEYYISQQLTDKSDVYSFGVILLELISGQEAISNVNFGVNCRNIVQWAKLHIESGDIQGIIDPSLRNEYDIQSMWKIAEKALMCVQPHGHLRPSISEVLKEIQDSILIEREATATREGNSDDMSRNSVHSMNMGSLDLCGNENYVSFDESIARPTAR 925
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33903821 33911661 - CcPI632755_10g020520.1 Cco10g2052 191010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g2052 925 Pfam Protein kinase domain 601 868 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g2052 925 SUPERFAMILY Protein kinase-like (PK-like) 585 870 IPR011009 -
Cco10g2052 925 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 674 883 - -
Cco10g2052 925 SUPERFAMILY L domain-like 397 504 - -
Cco10g2052 925 ProSiteProfiles Protein kinase domain profile. 598 875 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g2052 925 Gene3D Phosphorylase Kinase; domain 1 573 673 - -
Cco10g2052 925 Gene3D Ribonuclease Inhibitor 376 522 IPR032675 -
Cco10g2052 925 Gene3D Transferase(Phosphotransferase) domain 1 674 896 - -
Cco10g2052 925 CDD STKc_IRAK 604 871 - -
Cco10g2052 925 ProSitePatterns Protein kinases ATP-binding region signature. 604 626 IPR017441 GO:0005524(InterPro)
Cco10g2052 925 FunFam Leucine-rich repeat receptor-like protein kinase 575 673 - -
Cco10g2052 925 FunFam Leucine-rich repeat protein kinase family protein 373 523 - -
Cco10g2052 925 SMART serkin_6 598 875 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g2052 925 Pfam Malectin-like domain 31 361 IPR024788 -
Cco10g2052 925 PANTHER OS07G0107800 PROTEIN-RELATED 457 878 - -
Cco10g2052 925 Pfam Leucine Rich repeats (2 copies) 460 494 IPR025875 -
Cco10g2052 925 ProSitePatterns Serine/Threonine protein kinases active-site signature. 720 732 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2886 Cco-Chr5:36430439 Cco10g2052 Cco-Chr10:33903821 8.60E-244 dispersed
Cco08g0337 Cco-Chr8:6629201 Cco10g2052 Cco-Chr10:33903821 1.40E-61 dispersed
Cco09g0884 Cco-Chr9:8300892 Cco10g2052 Cco-Chr10:33903821 2.00E-96 dispersed
Cco10g2052 Cco-Chr10:33903821 Cco11g1720 Cco-Chr11:30038894 6.40E-106 dispersed
Cco10g2052 Cco-Chr10:33903821 Cco10g2058 Cco-Chr10:33962794 1.70E-61 proximal
Cco03g0076 Cco-Chr3:788883 Cco10g2052 Cco-Chr10:33903821 1.50E-57 transposed
Cco05g2371 Cco-Chr5:32236371 Cco10g2052 Cco-Chr10:33903821 2.50E-28 transposed
Cco06g0152 Cco-Chr6:1559540 Cco10g2052 Cco-Chr10:33903821 5.90E-107 transposed
Cco10g2052 Cco-Chr10:33903821 Cco05g1172 Cco-Chr5:10831199 6.70E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87178 PF12819 Malectin_like 2.40E-77 CL0202 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g2052 - - - 0.0