Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g2053 ATGCTGGATCTTAACCTTGAAGTTGTTTCCTCCGAGTCGGCTTCCGATTCGGTTGAGATGGTTACTGAGAGGTTTCTGCAGTTTCCGGCGAATAGAATGGAAAGCGCCGGTAGCTTCAACTCGTCCTCTGTCGTTAACGGCGATCTTTCCGCCAGTACCACCGGCGACGAGGACTCGTCTTCTAACGCCGATGAGGCGTTCCCGTTCACCTTTGTTAAAGACTCCGCGGTTCAAGAAAGCTTAACGGCGAAATCACTCTGTGTTTTCGATGACCACCGCGATCAGACGATGGAGCTCTTCCCATTAACAGGCGGCTTCTCTTCTGGTTCGAGTCCTCAGAAGCGGTGGCCGGAGGTTTCTCCGCCGGAATTTGGTTATTGTGGCGGTGTGCCGGAGCGGCGAATAAACGCACCGCCGGCGCAGCAACAGCAGCAGCCAATGAGAAAGAACCGACGAGGTCCAAGGTCTCGAAGTTCGCAGTATCGTGGAGTTACTTTTTATCGACGAACAGGAAGATGGGAATCACATATTTGGGACTGCGGGAAACAGGTTTATTTGGGTGGTTTCGATACTGCACATGCTGCTGCTAGGGCATATGATCGAGCGGCGATCAAGTTTCGTGGGATCGATGCAGATATCAATTTCAATGTCTGTGATTATGATGAAGATATTAAGCAGATGAGTAATTTCACCAAGGAAGAGTTCGTTCATATTCTTCGTCGCCATAGCACTGGATTTTCAAGGGGAAGCTCGAAATACAGAGGAGTCACTCTGCATAAATGTGGGCGATGGGAAGCTCGAATGGGCCAGTTTTTGGGCAAGAAGTACATATATCTTGGACTCTTTGATAGTGAGATTGAGGCTGCAAGGGCATATGACAAGGCTGCCTTAAGATGCAATGGTAAGGAGGCTGTTACAAACTTTGAACCAAGTTCTTATGTGGCAGAGATGGCTTCTGAGACTGACACAGGAGAGAACAACCAGATTCTTGATCTGAACTTGGGAATTGCTCCCCCAAATCTTTCTGATGTCCGAAGTGAGAGTATTGGCATGTTTGGTAATGGTATTCATCACAGCTCACACGACATCATTGTTGACAGAAGAGCTATGCCTGAGAACTCTGCTTCAGCAGCAATTAGATCATCTCAGCCATATAGCTTTGCAGTGCCTTCTAATTACCATTCTTCTTGGAATGTTTCAAATTCCAGTTTCTTTCCCATCTCCAGGGAAAGAGCAACAGAGATGAGGATGGGGGTTGGGTCCTGGGAGTGGCAAATCCATGGCCACCCGAGTGAAACCTCTGTTCCACTCTTCTCTGCTGCAGCATCATCAGGATTCCCTTCATCTTCTTCTTCATCAACTGTCATTTCATCAGCATCCCCTGCTGTTGGTGAAATCCATTTCCCAGCAATCTTCTACTGGCCTGTCCCTACGCCACTTAAGGCTCATCTCCGCCCACCTTGCCGGCCTCCGCCGTCACCTCCGCCTGCACCTTACCGATCTGTCTTCTCCTTATCGAATGAAGTTCCAATCGTGTTGTCAGAAACAAAAAAGTTGAAGATGAACAGTCCGATCATCAAAAGATAA 1587 48.33 MLDLNLEVVSSESASDSVEMVTERFLQFPANRMESAGSFNSSSVVNGDLSASTTGDEDSSSNADEAFPFTFVKDSAVQESLTAKSLCVFDDHRDQTMELFPLTGGFSSGSSPQKRWPEVSPPEFGYCGGVPERRINAPPAQQQQQPMRKNRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGIDADINFNVCDYDEDIKQMSNFTKEEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEIEAARAYDKAALRCNGKEAVTNFEPSSYVAEMASETDTGENNQILDLNLGIAPPNLSDVRSESIGMFGNGIHHSSHDIIVDRRAMPENSASAAIRSSQPYSFAVPSNYHSSWNVSNSSFFPISRERATEMRMGVGSWEWQIHGHPSETSVPLFSAAASSGFPSSSSSSTVISSASPAVGEIHFPAIFYWPVPTPLKAHLRPPCRPPPSPPPAPYRSVFSLSNEVPIVLSETKKLKMNSPIIKR 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33922839 33930856 - CcPI632755_10g020530.1 Cco10g2053 191011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g2053 528 PRINTS Ethylene responsive element binding protein signature 291 311 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g2053 528 PRINTS Ethylene responsive element binding protein signature 253 264 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g2053 528 MobiDBLite consensus disorder prediction 37 62 - -
Cco10g2053 528 MobiDBLite consensus disorder prediction 131 161 - -
Cco10g2053 528 SUPERFAMILY DNA-binding domain 159 217 IPR016177 GO:0003677(InterPro)
Cco10g2053 528 Pfam AP2 domain 160 208 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g2053 528 Pfam AP2 domain 251 300 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g2053 528 SUPERFAMILY DNA-binding domain 251 310 IPR016177 GO:0003677(InterPro)
Cco10g2053 528 Gene3D AP2/ERF domain 159 217 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g2053 528 Gene3D AP2/ERF domain 251 310 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g2053 528 SMART rav1_2 252 315 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g2053 528 SMART rav1_2 160 222 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g2053 528 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 75 344 - -
Cco10g2053 528 CDD AP2 159 217 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g2053 528 CDD AP2 251 311 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g2053 528 ProSiteProfiles AP2/ERF domain profile. 252 309 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g2053 528 FunFam AP2-like ethylene-responsive transcription factor 159 218 - -
Cco10g2053 528 ProSiteProfiles AP2/ERF domain profile. 160 216 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1452 Cco-Chr4:29944712 Cco10g2053 Cco-Chr10:33922839 4.50E-90 dispersed
Cco10g2053 Cco-Chr10:33922839 Cco11g0916 Cco-Chr11:13224340 1.30E-42 dispersed
Cco10g2053 Cco-Chr10:33922839 Cco02g2225 Cco-Chr2:34853474 2.40E-118 wgd
Cco10g2053 Cco-Chr10:33922839 Cco02g1495 Cco-Chr2:27498678 2.70E-69 wgd
Cco10g2053 Cco-Chr10:33922839 Cco04g1079 Cco-Chr4:26261938 3.80E-103 wgd
Cco10g2053 Cco-Chr10:33922839 Cco05g1164 Cco-Chr5:10746004 1.90E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60189 PF00847 AP2 1.50E-09 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g2053 K09284 - csv:101211242 834.328