Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g2053 | ATGCTGGATCTTAACCTTGAAGTTGTTTCCTCCGAGTCGGCTTCCGATTCGGTTGAGATGGTTACTGAGAGGTTTCTGCAGTTTCCGGCGAATAGAATGGAAAGCGCCGGTAGCTTCAACTCGTCCTCTGTCGTTAACGGCGATCTTTCCGCCAGTACCACCGGCGACGAGGACTCGTCTTCTAACGCCGATGAGGCGTTCCCGTTCACCTTTGTTAAAGACTCCGCGGTTCAAGAAAGCTTAACGGCGAAATCACTCTGTGTTTTCGATGACCACCGCGATCAGACGATGGAGCTCTTCCCATTAACAGGCGGCTTCTCTTCTGGTTCGAGTCCTCAGAAGCGGTGGCCGGAGGTTTCTCCGCCGGAATTTGGTTATTGTGGCGGTGTGCCGGAGCGGCGAATAAACGCACCGCCGGCGCAGCAACAGCAGCAGCCAATGAGAAAGAACCGACGAGGTCCAAGGTCTCGAAGTTCGCAGTATCGTGGAGTTACTTTTTATCGACGAACAGGAAGATGGGAATCACATATTTGGGACTGCGGGAAACAGGTTTATTTGGGTGGTTTCGATACTGCACATGCTGCTGCTAGGGCATATGATCGAGCGGCGATCAAGTTTCGTGGGATCGATGCAGATATCAATTTCAATGTCTGTGATTATGATGAAGATATTAAGCAGATGAGTAATTTCACCAAGGAAGAGTTCGTTCATATTCTTCGTCGCCATAGCACTGGATTTTCAAGGGGAAGCTCGAAATACAGAGGAGTCACTCTGCATAAATGTGGGCGATGGGAAGCTCGAATGGGCCAGTTTTTGGGCAAGAAGTACATATATCTTGGACTCTTTGATAGTGAGATTGAGGCTGCAAGGGCATATGACAAGGCTGCCTTAAGATGCAATGGTAAGGAGGCTGTTACAAACTTTGAACCAAGTTCTTATGTGGCAGAGATGGCTTCTGAGACTGACACAGGAGAGAACAACCAGATTCTTGATCTGAACTTGGGAATTGCTCCCCCAAATCTTTCTGATGTCCGAAGTGAGAGTATTGGCATGTTTGGTAATGGTATTCATCACAGCTCACACGACATCATTGTTGACAGAAGAGCTATGCCTGAGAACTCTGCTTCAGCAGCAATTAGATCATCTCAGCCATATAGCTTTGCAGTGCCTTCTAATTACCATTCTTCTTGGAATGTTTCAAATTCCAGTTTCTTTCCCATCTCCAGGGAAAGAGCAACAGAGATGAGGATGGGGGTTGGGTCCTGGGAGTGGCAAATCCATGGCCACCCGAGTGAAACCTCTGTTCCACTCTTCTCTGCTGCAGCATCATCAGGATTCCCTTCATCTTCTTCTTCATCAACTGTCATTTCATCAGCATCCCCTGCTGTTGGTGAAATCCATTTCCCAGCAATCTTCTACTGGCCTGTCCCTACGCCACTTAAGGCTCATCTCCGCCCACCTTGCCGGCCTCCGCCGTCACCTCCGCCTGCACCTTACCGATCTGTCTTCTCCTTATCGAATGAAGTTCCAATCGTGTTGTCAGAAACAAAAAAGTTGAAGATGAACAGTCCGATCATCAAAAGATAA | 1587 | 48.33 | MLDLNLEVVSSESASDSVEMVTERFLQFPANRMESAGSFNSSSVVNGDLSASTTGDEDSSSNADEAFPFTFVKDSAVQESLTAKSLCVFDDHRDQTMELFPLTGGFSSGSSPQKRWPEVSPPEFGYCGGVPERRINAPPAQQQQQPMRKNRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGIDADINFNVCDYDEDIKQMSNFTKEEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEIEAARAYDKAALRCNGKEAVTNFEPSSYVAEMASETDTGENNQILDLNLGIAPPNLSDVRSESIGMFGNGIHHSSHDIIVDRRAMPENSASAAIRSSQPYSFAVPSNYHSSWNVSNSSFFPISRERATEMRMGVGSWEWQIHGHPSETSVPLFSAAASSGFPSSSSSSTVISSASPAVGEIHFPAIFYWPVPTPLKAHLRPPCRPPPSPPPAPYRSVFSLSNEVPIVLSETKKLKMNSPIIKR | 528 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 33922839 | 33930856 | - | CcPI632755_10g020530.1 | Cco10g2053 | 191011 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g2053 | 528 | PRINTS | Ethylene responsive element binding protein signature | 291 | 311 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco10g2053 | 528 | PRINTS | Ethylene responsive element binding protein signature | 253 | 264 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco10g2053 | 528 | MobiDBLite | consensus disorder prediction | 37 | 62 | - | - | |
Cco10g2053 | 528 | MobiDBLite | consensus disorder prediction | 131 | 161 | - | - | |
Cco10g2053 | 528 | SUPERFAMILY | DNA-binding domain | 159 | 217 | IPR016177 | GO:0003677(InterPro) | |
Cco10g2053 | 528 | Pfam | AP2 domain | 160 | 208 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco10g2053 | 528 | Pfam | AP2 domain | 251 | 300 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco10g2053 | 528 | SUPERFAMILY | DNA-binding domain | 251 | 310 | IPR016177 | GO:0003677(InterPro) | |
Cco10g2053 | 528 | Gene3D | AP2/ERF domain | 159 | 217 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco10g2053 | 528 | Gene3D | AP2/ERF domain | 251 | 310 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco10g2053 | 528 | SMART | rav1_2 | 252 | 315 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco10g2053 | 528 | SMART | rav1_2 | 160 | 222 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco10g2053 | 528 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 75 | 344 | - | - | |
Cco10g2053 | 528 | CDD | AP2 | 159 | 217 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco10g2053 | 528 | CDD | AP2 | 251 | 311 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco10g2053 | 528 | ProSiteProfiles | AP2/ERF domain profile. | 252 | 309 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco10g2053 | 528 | FunFam | AP2-like ethylene-responsive transcription factor | 159 | 218 | - | - | |
Cco10g2053 | 528 | ProSiteProfiles | AP2/ERF domain profile. | 160 | 216 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g1452 | Cco-Chr4:29944712 | Cco10g2053 | Cco-Chr10:33922839 | 4.50E-90 | dispersed | |
Cco10g2053 | Cco-Chr10:33922839 | Cco11g0916 | Cco-Chr11:13224340 | 1.30E-42 | dispersed | |
Cco10g2053 | Cco-Chr10:33922839 | Cco02g2225 | Cco-Chr2:34853474 | 2.40E-118 | wgd | |
Cco10g2053 | Cco-Chr10:33922839 | Cco02g1495 | Cco-Chr2:27498678 | 2.70E-69 | wgd | |
Cco10g2053 | Cco-Chr10:33922839 | Cco04g1079 | Cco-Chr4:26261938 | 3.80E-103 | wgd | |
Cco10g2053 | Cco-Chr10:33922839 | Cco05g1164 | Cco-Chr5:10746004 | 1.90E-06 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60189 | PF00847 | AP2 | 1.50E-09 | CL0081 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g2053 | K09284 | - | csv:101211242 | 834.328 |