Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g2058 ATGATTTGGATTCCTTGTTCTGGAAATTCAAACAGGAAACTCAAGTCCAAGAAATTGAAGAAGTTGGAATCTCAGAAGACTCGAGTTGATCCGATCAACGGGAAACTAAAAACAAATTCCTCCTTCAGTGAAAACTCCAAAGGTGGAGGATCTGATCCTATCAAGGCACAGATATTTTCCTTCCGGGAGTTGGCAGCTGCTACCAGGAATTTTAGGGCAGACTGTCTTTTGGGAGAAGGAGGTTTTGGTAGAGTTTACAAGGGAAAGTTAGAAAGCATCAATCAGGTTGTGGCAATCAAACAACTCGATCGCAATGGGTCGCAAGGGAACAGAGAGTTTCTTGTTGAAGTATTGATGTTAAGCCTGCTTCATCACCCAAATCTAGTTAATCTGATCGGTTATTGTGCTGATGGAGATCAAAGGCTTCTGATATATGAATATATGCCTCTAGGATCTTTAGACGACCATTTACATGACATTTCACCTGGTACAAAGGTTCTAGATTGGAATACAAGAATGAAAATAGCTGCTGGGGCAGCACGAGGGTTGGAATATTTGCATGACAAAGCTAGCCCGCCGGTTATTTATCGAGATTTAAAAAGTTCCAACATTCTGCTTGATAAAGGTTATCATCCCAAACTATCTGATTTTGGATTGGCCAAACTTGGGCCTGTTGGGGATAATACACATGTATCTACCAGAGTTATGGGTACTTACGGATATTGCGCTCCCGAGTATGCAATGACTGGTCAGTTAACTCTCAAGTCGGATGTTTATAGCTTCGGTGTTGTCCTTCTAGAAATCATAACAGGCAGGAAAGCAATTGATGATTCAAGAGCTGCAGGGGAGCAGAATCTGGTTTCTTGGGCAAGACCATTATTTAAAGACCGTCTGAGATTTGCTCAAATGGCAGATCCAATGCTTAGAGGCCAATACCCTTCAAGGGGTTTGTATCAGGCTCTTGCAATTGCAGCAATGTGTGTTCAAGAGCAGCCAAATATGCGACCCGTAATTGCCGATGTCGTCACAGCTTTATCTTATCTTGCTTCCCAAAGATACAACCCTGGTACGAACATACCCCACGACTCCCCTGGATCTGCTTGTACTCCTCCAAGAACCAACAGAGATTCTGATAGGAAGCTTAATGGGGGTAGAAGATACGATAGAAATCCAACTAAACGACTATAA 1188 42.59 MIWIPCSGNSNRKLKSKKLKKLESQKTRVDPINGKLKTNSSFSENSKGGGSDPIKAQIFSFRELAAATRNFRADCLLGEGGFGRVYKGKLESINQVVAIKQLDRNGSQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLIYEYMPLGSLDDHLHDISPGTKVLDWNTRMKIAAGAARGLEYLHDKASPPVIYRDLKSSNILLDKGYHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDDSRAAGEQNLVSWARPLFKDRLRFAQMADPMLRGQYPSRGLYQALAIAAMCVQEQPNMRPVIADVVTALSYLASQRYNPGTNIPHDSPGSACTPPRTNRDSDRKLNGGRRYDRNPTKRL 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33962794 33965616 + CcPI632755_10g020580.1 Cco10g2058 191016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g2058 395 MobiDBLite consensus disorder prediction 356 372 - -
Cco10g2058 395 Gene3D Phosphorylase Kinase; domain 1 44 147 - -
Cco10g2058 395 SMART serkin_6 71 348 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g2058 395 MobiDBLite consensus disorder prediction 356 395 - -
Cco10g2058 395 MobiDBLite consensus disorder prediction 31 50 - -
Cco10g2058 395 Pfam Protein tyrosine and serine/threonine kinase 75 344 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g2058 395 Gene3D Transferase(Phosphotransferase) domain 1 148 359 - -
Cco10g2058 395 MobiDBLite consensus disorder prediction 15 51 - -
Cco10g2058 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g2058 395 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524(InterPro)
Cco10g2058 395 SUPERFAMILY Protein kinase-like (PK-like) 54 345 IPR011009 -
Cco10g2058 395 MobiDBLite consensus disorder prediction 373 395 - -
Cco10g2058 395 CDD STKc_IRAK 77 345 - -
Cco10g2058 395 PANTHER OS07G0668900 PROTEIN 25 360 - -
Cco10g2058 395 FunFam Serine/threonine-protein kinase PBS1 44 147 - -
Cco10g2058 395 ProSiteProfiles Protein kinase domain profile. 71 348 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g2058 395 FunFam Serine/threonine-protein kinase PBS1 148 363 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0222 Cco-Chr3:2313428 Cco10g2058 Cco-Chr10:33962794 1.20E-144 dispersed
Cco05g0690 Cco-Chr5:5660093 Cco10g2058 Cco-Chr10:33962794 7.60E-150 dispersed
Cco06g0185 Cco-Chr6:1946878 Cco10g2058 Cco-Chr10:33962794 9.30E-146 dispersed
Cco09g0893 Cco-Chr9:8380499 Cco10g2058 Cco-Chr10:33962794 1.10E-130 dispersed
Cco09g1074 Cco-Chr9:10259692 Cco10g2058 Cco-Chr10:33962794 6.20E-124 dispersed
Cco10g0517 Cco-Chr10:6168963 Cco10g2058 Cco-Chr10:33962794 3.40E-132 dispersed
Cco10g1138 Cco-Chr10:23800740 Cco10g2058 Cco-Chr10:33962794 4.70E-86 dispersed
Cco10g2058 Cco-Chr10:33962794 Cco11g1924 Cco-Chr11:31943122 3.40E-125 dispersed
Cco10g2052 Cco-Chr10:33903821 Cco10g2058 Cco-Chr10:33962794 1.70E-61 proximal
Cco08g1303 Cco-Chr8:24818379 Cco10g2058 Cco-Chr10:33962794 7.40E-48 transposed
Cco01g1585 Cco-Chr1:28550836 Cco10g2058 Cco-Chr10:33962794 1.70E-87 wgd
Cco10g2058 Cco-Chr10:33962794 Cco02g2219 Cco-Chr2:34782653 3.80E-132 wgd
Cco10g2058 Cco-Chr10:33962794 Cco02g1486 Cco-Chr2:27375699 2.20E-164 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87179 PF07714 PK_Tyr_Ser-Thr 1.40E-46 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g2058 - - - 0.0