Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g2058 | ATGATTTGGATTCCTTGTTCTGGAAATTCAAACAGGAAACTCAAGTCCAAGAAATTGAAGAAGTTGGAATCTCAGAAGACTCGAGTTGATCCGATCAACGGGAAACTAAAAACAAATTCCTCCTTCAGTGAAAACTCCAAAGGTGGAGGATCTGATCCTATCAAGGCACAGATATTTTCCTTCCGGGAGTTGGCAGCTGCTACCAGGAATTTTAGGGCAGACTGTCTTTTGGGAGAAGGAGGTTTTGGTAGAGTTTACAAGGGAAAGTTAGAAAGCATCAATCAGGTTGTGGCAATCAAACAACTCGATCGCAATGGGTCGCAAGGGAACAGAGAGTTTCTTGTTGAAGTATTGATGTTAAGCCTGCTTCATCACCCAAATCTAGTTAATCTGATCGGTTATTGTGCTGATGGAGATCAAAGGCTTCTGATATATGAATATATGCCTCTAGGATCTTTAGACGACCATTTACATGACATTTCACCTGGTACAAAGGTTCTAGATTGGAATACAAGAATGAAAATAGCTGCTGGGGCAGCACGAGGGTTGGAATATTTGCATGACAAAGCTAGCCCGCCGGTTATTTATCGAGATTTAAAAAGTTCCAACATTCTGCTTGATAAAGGTTATCATCCCAAACTATCTGATTTTGGATTGGCCAAACTTGGGCCTGTTGGGGATAATACACATGTATCTACCAGAGTTATGGGTACTTACGGATATTGCGCTCCCGAGTATGCAATGACTGGTCAGTTAACTCTCAAGTCGGATGTTTATAGCTTCGGTGTTGTCCTTCTAGAAATCATAACAGGCAGGAAAGCAATTGATGATTCAAGAGCTGCAGGGGAGCAGAATCTGGTTTCTTGGGCAAGACCATTATTTAAAGACCGTCTGAGATTTGCTCAAATGGCAGATCCAATGCTTAGAGGCCAATACCCTTCAAGGGGTTTGTATCAGGCTCTTGCAATTGCAGCAATGTGTGTTCAAGAGCAGCCAAATATGCGACCCGTAATTGCCGATGTCGTCACAGCTTTATCTTATCTTGCTTCCCAAAGATACAACCCTGGTACGAACATACCCCACGACTCCCCTGGATCTGCTTGTACTCCTCCAAGAACCAACAGAGATTCTGATAGGAAGCTTAATGGGGGTAGAAGATACGATAGAAATCCAACTAAACGACTATAA | 1188 | 42.59 | MIWIPCSGNSNRKLKSKKLKKLESQKTRVDPINGKLKTNSSFSENSKGGGSDPIKAQIFSFRELAAATRNFRADCLLGEGGFGRVYKGKLESINQVVAIKQLDRNGSQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLIYEYMPLGSLDDHLHDISPGTKVLDWNTRMKIAAGAARGLEYLHDKASPPVIYRDLKSSNILLDKGYHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDDSRAAGEQNLVSWARPLFKDRLRFAQMADPMLRGQYPSRGLYQALAIAAMCVQEQPNMRPVIADVVTALSYLASQRYNPGTNIPHDSPGSACTPPRTNRDSDRKLNGGRRYDRNPTKRL | 395 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 33962794 | 33965616 | + | CcPI632755_10g020580.1 | Cco10g2058 | 191016 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g2058 | 395 | MobiDBLite | consensus disorder prediction | 356 | 372 | - | - | |
Cco10g2058 | 395 | Gene3D | Phosphorylase Kinase; domain 1 | 44 | 147 | - | - | |
Cco10g2058 | 395 | SMART | serkin_6 | 71 | 348 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco10g2058 | 395 | MobiDBLite | consensus disorder prediction | 356 | 395 | - | - | |
Cco10g2058 | 395 | MobiDBLite | consensus disorder prediction | 31 | 50 | - | - | |
Cco10g2058 | 395 | Pfam | Protein tyrosine and serine/threonine kinase | 75 | 344 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco10g2058 | 395 | Gene3D | Transferase(Phosphotransferase) domain 1 | 148 | 359 | - | - | |
Cco10g2058 | 395 | MobiDBLite | consensus disorder prediction | 15 | 51 | - | - | |
Cco10g2058 | 395 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 194 | 206 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco10g2058 | 395 | ProSitePatterns | Protein kinases ATP-binding region signature. | 77 | 100 | IPR017441 | GO:0005524(InterPro) | |
Cco10g2058 | 395 | SUPERFAMILY | Protein kinase-like (PK-like) | 54 | 345 | IPR011009 | - | |
Cco10g2058 | 395 | MobiDBLite | consensus disorder prediction | 373 | 395 | - | - | |
Cco10g2058 | 395 | CDD | STKc_IRAK | 77 | 345 | - | - | |
Cco10g2058 | 395 | PANTHER | OS07G0668900 PROTEIN | 25 | 360 | - | - | |
Cco10g2058 | 395 | FunFam | Serine/threonine-protein kinase PBS1 | 44 | 147 | - | - | |
Cco10g2058 | 395 | ProSiteProfiles | Protein kinase domain profile. | 71 | 348 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco10g2058 | 395 | FunFam | Serine/threonine-protein kinase PBS1 | 148 | 363 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco03g0222 | Cco-Chr3:2313428 | Cco10g2058 | Cco-Chr10:33962794 | 1.20E-144 | dispersed | |
Cco05g0690 | Cco-Chr5:5660093 | Cco10g2058 | Cco-Chr10:33962794 | 7.60E-150 | dispersed | |
Cco06g0185 | Cco-Chr6:1946878 | Cco10g2058 | Cco-Chr10:33962794 | 9.30E-146 | dispersed | |
Cco09g0893 | Cco-Chr9:8380499 | Cco10g2058 | Cco-Chr10:33962794 | 1.10E-130 | dispersed | |
Cco09g1074 | Cco-Chr9:10259692 | Cco10g2058 | Cco-Chr10:33962794 | 6.20E-124 | dispersed | |
Cco10g0517 | Cco-Chr10:6168963 | Cco10g2058 | Cco-Chr10:33962794 | 3.40E-132 | dispersed | |
Cco10g1138 | Cco-Chr10:23800740 | Cco10g2058 | Cco-Chr10:33962794 | 4.70E-86 | dispersed | |
Cco10g2058 | Cco-Chr10:33962794 | Cco11g1924 | Cco-Chr11:31943122 | 3.40E-125 | dispersed | |
Cco10g2052 | Cco-Chr10:33903821 | Cco10g2058 | Cco-Chr10:33962794 | 1.70E-61 | proximal | |
Cco08g1303 | Cco-Chr8:24818379 | Cco10g2058 | Cco-Chr10:33962794 | 7.40E-48 | transposed | |
Cco01g1585 | Cco-Chr1:28550836 | Cco10g2058 | Cco-Chr10:33962794 | 1.70E-87 | wgd | |
Cco10g2058 | Cco-Chr10:33962794 | Cco02g2219 | Cco-Chr2:34782653 | 3.80E-132 | wgd | |
Cco10g2058 | Cco-Chr10:33962794 | Cco02g1486 | Cco-Chr2:27375699 | 2.20E-164 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
87179 | PF07714 | PK_Tyr_Ser-Thr | 1.40E-46 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g2058 | - | - | - | 0.0 |