Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g2059 ATGGCTGCTCTCGTGGAAGAGGTTCTACCTCCGTCGTTGGATGCCACCGCCGAACAACCTCCTCTGTTCGACGGAACTACTAGGTTATATACTGCTTACATATGCCCCTATGCTCAACGTGTGTGGATCACCCGAAATTACAAGGGACTACAAGATAAAATTAAGCTAGTTCCTCTCAACCTTTATAACAGGCCTGACTGGTATAAGGAGAAAGTATACCCTATAAACAAGGTGCCATCTCTGGAACATAATGGGAAAGTTATTGGAGAAAGTCTTGATCTGATCAAATATGTTGATAGCAACTTTGAAGGACCTTCTCTTCTCCCAGATGATCCTGCTAAAAGAGAGTATGCTGAAGAGTTGCTATCCTACAGCGATACGTTTAACATCGCAGTAGCTTCTTCATTTAAAGGCGACACCGCAAAGGAAGCAGGTGCTCAATTTGATTACTTGGAAAATGCTTTGCAAAAATTTGATGGCCCCTTCTTCCTTGGAGAGATCAGTCAGGTGGATATAGCATACATTCCATTTGTTGAAAGGTTCCAGGTTTTCTTATTAGAGGCTCTCAAGATTGACATCACAGAAGGAAGGCCGAAGCTAGCTGCATGGATTGAGGAGCTCAATAAGATTGATGCGTACAAGCAAACAAAAGCTGATCCCAAGCTAATTGTTGAAGCTTATACAAAGCGATTTTTGGTTGAAGAGATGATACGAATAAATTACCCAACACGTCGACGGGAATTTTTCGATGTTTGTTCTGTACTTTCAATGTATTTTGGTGTGTTTGAAGCAATTAGTTTGTATGTCGCTGCTCGCGTTTGCTTCCTCCGATTCCCTATATATACATCTCTCAATGAAGCGGCCATATATCTCATTCGAAGAACATCCATGGCGTCCCCCTACGTGGAAGAAATTCCACCTCCGTCGTTGGATGCCACCACCGAACAACCTCCCCTGTTTGATGGAACTACCAGGTTGTATACTGCTTACATTTGCCCTTATGCACACCGTGTTTGGATCATCCGGAATTACAAGGGACTACAACATAAAATTGAGCTTGTTCCTCTCAATCTTATTAATAGGCCTGACTGGTATAAGGAGAAAGTGTACCCTATGAACAAGGTGCCATCTCTGGAACATAACGGAAAAGTTATCGGAGAAAGCCTTGATCTGCTCAAATATATTGATAGCAACTTTGAAGGACCTTCTCTTCTCCCAGATCCTGCTAAAAGAGAGTATGCCGAAGAGTTGCTATCCTACAGCGAAACGTTTAACGGCGCAATAATCGATTCGTTTAAAGGTGACACCGCTAAGGAAGCAGGTGCTCAATTTGATTACTTGGAAAATGCTTTGGGAAAATTTGATGGCCCGTTCCTCCTTGGAGAAATCAGCCAGGTGGATATAGCATACATTCCATTTGTTGAAAGGTTCCACATTTTCTTATTAGAGGCTCTCAAAATTGACATCACAGAAGGAAGGCCTAAACTACTTGCTTGGATTGAGGAGTTCAATAAGATTGATGCGTACAAGCAAACAAAAGTTGATCCCAAGCTGGTCGTTGAAATTTATTCAATGCGATTCTTGAGAGAGAAAGAGAGAAGGAGAGACCGAAGAAATCGATCTGTTAGCGAAGATCAAGTTCCATTTGGGGAACCTCCATATTCGTTGAGAAAATCACGAAATCTTGCAGACCTTCTCCACCCGCTAATGGCGGAGAGGAGCATGCACATGCTCCACATTCTCGAGCCGAGAAGGGATGCCTATGGATTTGCTCTGAGACCTCAACACACGCATAGATATAGAGAGCATGCTAACATTTACAAGGAGGAGGAAGAGGAAAGGTGTGATAAGTGGAAGAACTTTCTTGATCAAGTAGCTACATCATTTCAAGTGTGTCCTCTTGAGGAGGCAAATACAAATACACTGCAGGCTGAAACTAGCGAGCACCAAGAAGAGACCGTATCGGGGAGGAGTAGCACAGGGGATGACTCAACTGGCTCAAAATCTGATTCTGTTGACACCACAGATAGTGTTCCTACAAAACTCTTAGAGCCTCCAGTAGAAACACAAAAATGTATTGTTCAGACTTGGTGTCAAACTAGGCCGTCTCTAAATGCCATTGAGATTATGATGAGCTCTCGTGTTAAAAAGAAGATTATGAAAGATGAAAAGACAAGTAATGGTGGAGATCATCTTCCACTGCTAGAGGAGGCAGAATCTTTAGAAGGAACATCTGTGGAAAACTCTGAAGAGGAAGAAGCTTGCTTCAGTGGAGCACTAAATCGTAGTACATCTGCTACTGGGGCAGAAAGTAGGATGGACGAATCCATTTCTAACAGTGTGAAGCCCTCTGAGAGAGATGGTGTTGTGGGGGATGGAGTTTCTCAAGATCATACATGGAAAGAAGAATTAGAATGCCTTGTTCGTGGGGGGTTGCCGAAAGATCTGAGGGGAGAGGTGTGGCAAGCCTTTGTAGGTGTAAAGACCCGTCGAATTGAGAAATATTACCAGGATTTGTTGGACCAAGAAACTAATTGTAGTGCAGATAACGAGAACAATATCCCATCTGGTGTACCGATAAAATTGAAAAAACAGATTGAGAAGGATATACCACGGACATTTCCTGGTCATCCTGCCCTGGATGAGAATGGTAGAGACTCCTTAAGGCGTTTACTTTTAGCATATGCTCTTCACAATCCCTCTGTTGGTTACTGTCAGGCAATGAATTTCTTTGCGGGCTTGTTGCTACTCCTGATGCCCGAGGAGAATGCCTTTTGGACTTTGGTTGGAATAATAGATGACTATTTTGATGGATATTACACTGAGGAAATGATAGAATCGCAGGTGGACCAGCTTGTTTTTGAGGAATTGATGCGTGAAAGATTTCCTAAATTGGTTAAACATTTGGATTACTTGGGAGTGCAAGTGGCATGGATCACAGGACCTTGGTTCCTTTCCATTTTTGTAAATATGCTTCCGTGGGAGAGTGTACTCCGAGTTTGGGATGTGCTTCTGTTTGAAGGCAACAGAGTCATGCTGTTCCGGACAGCACTTGCTTTGATGGAACTATATGGTCCTGCATTAGTTACTACAAAAGATGCGGGGGACGCCATAACTCTGTTACAATCCCTTGCTGGTTCCACATTTGATAGTAGCCAGCTTGTGTTGACTGCTTGCATGGGTTTTCTGACTGTAACTGAAGTAAGACTAGTAGAGTTGAGAGAAAAGCTCCGACCATCTGTGCTAGCTGTAATTGAAGAAAGAACAAAGAAGGGTCGGGTTTGGAAGGATTCCAAAGGGCTAGCTTCCAAGCTTTATAGTTTCAAGCATGATCCCGGATCACCTATGGAGAGGAAAAAGACAGCTGCAGGAGCCGATGTAGGATCCTGTACCCCTAATCTGGATGACTTCCTTAGTGGATTAGCCGGTGATTCAGAAACAGAATCACTCCCAGACCTTCAAGAACAAGTAGTATGGTTGAAGGTTGAGTTGTGCAGGTTGCTGGAGGAAAAAAGATCTGCGGTTCTAAGAGCCGAGGAGCTAGAAACAGCACTTATGGAAATGGTCACCCAAGATAACCGACGACTATTAAGTGCCAGGGTTGAACAACTGGAGATAGAGGTAGCCGAGCTAAAGAAAACTCTAGCAGAGAAGAAAGAACAAGAAGTTGCAATGCTTCAGTTGTTGATGCGTGTTGAGCAAGAGCAAAGAGTAACCGAGGAAGCTAGAATAAACGCCGAGCAAGACGTAGCAGCTCAAAAATATGCTGTTCATATGCTTCAGGATAAATATGAGAAAGCTATGGCTTCACTTGCTGAGATGGAGAAAAGGGTGGTGATGGCTGAATCCATGTTGGAGGCTACATTACAATATGAATCTGGCCAAATTAAAGCAATGTCGTCTCCTGGGTCGCGTAATCAAGGATCTGCACAGGAAAATCAAAGAAAGGTTGGTTTGCTGCCATTTGCACTAGGCTGGCGAGATCGAAACAAGCTTGAATTTCTATTCTCAAATTGGGTCGACTGGCGTAGCTTAGAGGATCTTTCTTTTAGTTTTCTTCACATTAGCAGAATGGAAAGGCTTTTTCTTTGGGTGAAGAACCTTAATTTCAGAGTGAAGTTCCAACAGCTAAGTGACCCGTTCAGGAGACCCACTAAAAGATACTGGATTCAACCTTAA 4179 43.26 MAALVEEVLPPSLDATAEQPPLFDGTTRLYTAYICPYAQRVWITRNYKGLQDKIKLVPLNLYNRPDWYKEKVYPINKVPSLEHNGKVIGESLDLIKYVDSNFEGPSLLPDDPAKREYAEELLSYSDTFNIAVASSFKGDTAKEAGAQFDYLENALQKFDGPFFLGEISQVDIAYIPFVERFQVFLLEALKIDITEGRPKLAAWIEELNKIDAYKQTKADPKLIVEAYTKRFLVEEMIRINYPTRRREFFDVCSVLSMYFGVFEAISLYVAARVCFLRFPIYTSLNEAAIYLIRRTSMASPYVEEIPPPSLDATTEQPPLFDGTTRLYTAYICPYAHRVWIIRNYKGLQHKIELVPLNLINRPDWYKEKVYPMNKVPSLEHNGKVIGESLDLLKYIDSNFEGPSLLPDPAKREYAEELLSYSETFNGAIIDSFKGDTAKEAGAQFDYLENALGKFDGPFLLGEISQVDIAYIPFVERFHIFLLEALKIDITEGRPKLLAWIEEFNKIDAYKQTKVDPKLVVEIYSMRFLREKERRRDRRNRSVSEDQVPFGEPPYSLRKSRNLADLLHPLMAERSMHMLHILEPRRDAYGFALRPQHTHRYREHANIYKEEEEERCDKWKNFLDQVATSFQVCPLEEANTNTLQAETSEHQEETVSGRSSTGDDSTGSKSDSVDTTDSVPTKLLEPPVETQKCIVQTWCQTRPSLNAIEIMMSSRVKKKIMKDEKTSNGGDHLPLLEEAESLEGTSVENSEEEEACFSGALNRSTSATGAESRMDESISNSVKPSERDGVVGDGVSQDHTWKEELECLVRGGLPKDLRGEVWQAFVGVKTRRIEKYYQDLLDQETNCSADNENNIPSGVPIKLKKQIEKDIPRTFPGHPALDENGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTLVGIIDDYFDGYYTEEMIESQVDQLVFEELMRERFPKLVKHLDYLGVQVAWITGPWFLSIFVNMLPWESVLRVWDVLLFEGNRVMLFRTALALMELYGPALVTTKDAGDAITLLQSLAGSTFDSSQLVLTACMGFLTVTEVRLVELREKLRPSVLAVIEERTKKGRVWKDSKGLASKLYSFKHDPGSPMERKKTAAGADVGSCTPNLDDFLSGLAGDSETESLPDLQEQVVWLKVELCRLLEEKRSAVLRAEELETALMEMVTQDNRRLLSARVEQLEIEVAELKKTLAEKKEQEVAMLQLLMRVEQEQRVTEEARINAEQDVAAQKYAVHMLQDKYEKAMASLAEMEKRVVMAESMLEATLQYESGQIKAMSSPGSRNQGSAQENQRKVGLLPFALGWRDRNKLEFLFSNWVDWRSLEDLSFSFLHISRMERLFLWVKNLNFRVKFQQLSDPFRRPTKRYWIQP 1392
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 33967419 33987051 - CcPI632755_10g020590.1 Cco10g2059 191017
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco10g2059 1392 Pfam Glutathione S-transferase, C-terminal domain 146 205 - -
Cco10g2059 1392 Pfam Glutathione S-transferase, C-terminal domain 442 501 - -
Cco10g2059 1392 SUPERFAMILY Thioredoxin-like 317 404 IPR036249 -
Cco10g2059 1392 Pfam Rab-GTPase-TBC domain 815 1026 IPR000195 -
Cco10g2059 1392 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 25 106 IPR004045 -
Cco10g2059 1392 Coils Coil 1194 1249 - -
Cco10g2059 1392 SFLD Glutathione Transferase (cytosolic) 325 503 IPR040079 -
Cco10g2059 1392 SFLD Glutathione Transferase (cytosolic) 28 208 IPR040079 -
Cco10g2059 1392 CDD GST_C_Lambda 111 227 - -
Cco10g2059 1392 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 945 1060 IPR035969 -
Cco10g2059 1392 Gene3D - 939 1078 - -
Cco10g2059 1392 FunFam Lambda class glutathione S-transferase 104 234 - -
Cco10g2059 1392 MobiDBLite consensus disorder prediction 760 778 - -
Cco10g2059 1392 MobiDBLite consensus disorder prediction 657 678 - -
Cco10g2059 1392 SUPERFAMILY Thioredoxin-like 20 107 IPR036249 -
Cco10g2059 1392 ProSiteProfiles TBC/rab GAP domain profile. 811 1008 IPR000195 -
Cco10g2059 1392 SUPERFAMILY GST C-terminal domain-like 102 231 IPR036282 -
Cco10g2059 1392 Gene3D - 104 235 - -
Cco10g2059 1392 Gene3D - 401 530 - -
Cco10g2059 1392 MobiDBLite consensus disorder prediction 760 794 - -
Cco10g2059 1392 SUPERFAMILY GST C-terminal domain-like 400 527 IPR036282 -
Cco10g2059 1392 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 322 403 IPR004045 -
Cco10g2059 1392 FunFam Ypt/Rab-GAP domain of gyp1p superfamily protein 840 938 - -
Cco10g2059 1392 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 796 968 IPR035969 -
Cco10g2059 1392 MobiDBLite consensus disorder prediction 641 683 - -
Cco10g2059 1392 Gene3D Glutaredoxin 1 103 - -
Cco10g2059 1392 Gene3D Glutaredoxin 297 400 - -
Cco10g2059 1392 PANTHER GLUTATHIONE S-TRANSFERASE L1 2 243 IPR044629 GO:0004364(PANTHER)|GO:0004364(InterPro)|GO:0010731(PANTHER)
Cco10g2059 1392 SFLD Main (cytGST) 28 208 - -
Cco10g2059 1392 SMART tbc_4 808 1032 IPR000195 -
Cco10g2059 1392 FunFam Glutathione S-transferase L2, chloroplastic 1 103 - -
Cco10g2059 1392 Coils Coil 1257 1284 - -
Cco10g2059 1392 Pfam Glutathione S-transferase, N-terminal domain 326 402 IPR004045 -
Cco10g2059 1392 Pfam Glutathione S-transferase, N-terminal domain 29 105 IPR004045 -
Cco10g2059 1392 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 828 938 - -
Cco10g2059 1392 FunFam Glutathione S-transferase L2, chloroplastic 297 400 - -
Cco10g2059 1392 FunFam TBC1 domain family member 8B 939 1079 - -
Cco10g2059 1392 CDD GST_C_Lambda 407 523 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g2059 Cco-Chr10:33967419 Cco10g2060 Cco-Chr10:33991514 2.00E-103 tandem
Cco02g1056 Cco-Chr2:13943155 Cco10g2059 Cco-Chr10:33967419 1.30E-42 transposed
Cco02g1485 Cco-Chr2:27343522 Cco10g2059 Cco-Chr10:33967419 1.10E-224 transposed
Cco04g1097 Cco-Chr4:26399239 Cco10g2059 Cco-Chr10:33967419 2.00E-26 transposed
Cco10g2059 Cco-Chr10:33967419 Cco02g1483 Cco-Chr2:27328043 4.80E-89 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g2059 - - - 0.0