Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g2059 | ATGGCTGCTCTCGTGGAAGAGGTTCTACCTCCGTCGTTGGATGCCACCGCCGAACAACCTCCTCTGTTCGACGGAACTACTAGGTTATATACTGCTTACATATGCCCCTATGCTCAACGTGTGTGGATCACCCGAAATTACAAGGGACTACAAGATAAAATTAAGCTAGTTCCTCTCAACCTTTATAACAGGCCTGACTGGTATAAGGAGAAAGTATACCCTATAAACAAGGTGCCATCTCTGGAACATAATGGGAAAGTTATTGGAGAAAGTCTTGATCTGATCAAATATGTTGATAGCAACTTTGAAGGACCTTCTCTTCTCCCAGATGATCCTGCTAAAAGAGAGTATGCTGAAGAGTTGCTATCCTACAGCGATACGTTTAACATCGCAGTAGCTTCTTCATTTAAAGGCGACACCGCAAAGGAAGCAGGTGCTCAATTTGATTACTTGGAAAATGCTTTGCAAAAATTTGATGGCCCCTTCTTCCTTGGAGAGATCAGTCAGGTGGATATAGCATACATTCCATTTGTTGAAAGGTTCCAGGTTTTCTTATTAGAGGCTCTCAAGATTGACATCACAGAAGGAAGGCCGAAGCTAGCTGCATGGATTGAGGAGCTCAATAAGATTGATGCGTACAAGCAAACAAAAGCTGATCCCAAGCTAATTGTTGAAGCTTATACAAAGCGATTTTTGGTTGAAGAGATGATACGAATAAATTACCCAACACGTCGACGGGAATTTTTCGATGTTTGTTCTGTACTTTCAATGTATTTTGGTGTGTTTGAAGCAATTAGTTTGTATGTCGCTGCTCGCGTTTGCTTCCTCCGATTCCCTATATATACATCTCTCAATGAAGCGGCCATATATCTCATTCGAAGAACATCCATGGCGTCCCCCTACGTGGAAGAAATTCCACCTCCGTCGTTGGATGCCACCACCGAACAACCTCCCCTGTTTGATGGAACTACCAGGTTGTATACTGCTTACATTTGCCCTTATGCACACCGTGTTTGGATCATCCGGAATTACAAGGGACTACAACATAAAATTGAGCTTGTTCCTCTCAATCTTATTAATAGGCCTGACTGGTATAAGGAGAAAGTGTACCCTATGAACAAGGTGCCATCTCTGGAACATAACGGAAAAGTTATCGGAGAAAGCCTTGATCTGCTCAAATATATTGATAGCAACTTTGAAGGACCTTCTCTTCTCCCAGATCCTGCTAAAAGAGAGTATGCCGAAGAGTTGCTATCCTACAGCGAAACGTTTAACGGCGCAATAATCGATTCGTTTAAAGGTGACACCGCTAAGGAAGCAGGTGCTCAATTTGATTACTTGGAAAATGCTTTGGGAAAATTTGATGGCCCGTTCCTCCTTGGAGAAATCAGCCAGGTGGATATAGCATACATTCCATTTGTTGAAAGGTTCCACATTTTCTTATTAGAGGCTCTCAAAATTGACATCACAGAAGGAAGGCCTAAACTACTTGCTTGGATTGAGGAGTTCAATAAGATTGATGCGTACAAGCAAACAAAAGTTGATCCCAAGCTGGTCGTTGAAATTTATTCAATGCGATTCTTGAGAGAGAAAGAGAGAAGGAGAGACCGAAGAAATCGATCTGTTAGCGAAGATCAAGTTCCATTTGGGGAACCTCCATATTCGTTGAGAAAATCACGAAATCTTGCAGACCTTCTCCACCCGCTAATGGCGGAGAGGAGCATGCACATGCTCCACATTCTCGAGCCGAGAAGGGATGCCTATGGATTTGCTCTGAGACCTCAACACACGCATAGATATAGAGAGCATGCTAACATTTACAAGGAGGAGGAAGAGGAAAGGTGTGATAAGTGGAAGAACTTTCTTGATCAAGTAGCTACATCATTTCAAGTGTGTCCTCTTGAGGAGGCAAATACAAATACACTGCAGGCTGAAACTAGCGAGCACCAAGAAGAGACCGTATCGGGGAGGAGTAGCACAGGGGATGACTCAACTGGCTCAAAATCTGATTCTGTTGACACCACAGATAGTGTTCCTACAAAACTCTTAGAGCCTCCAGTAGAAACACAAAAATGTATTGTTCAGACTTGGTGTCAAACTAGGCCGTCTCTAAATGCCATTGAGATTATGATGAGCTCTCGTGTTAAAAAGAAGATTATGAAAGATGAAAAGACAAGTAATGGTGGAGATCATCTTCCACTGCTAGAGGAGGCAGAATCTTTAGAAGGAACATCTGTGGAAAACTCTGAAGAGGAAGAAGCTTGCTTCAGTGGAGCACTAAATCGTAGTACATCTGCTACTGGGGCAGAAAGTAGGATGGACGAATCCATTTCTAACAGTGTGAAGCCCTCTGAGAGAGATGGTGTTGTGGGGGATGGAGTTTCTCAAGATCATACATGGAAAGAAGAATTAGAATGCCTTGTTCGTGGGGGGTTGCCGAAAGATCTGAGGGGAGAGGTGTGGCAAGCCTTTGTAGGTGTAAAGACCCGTCGAATTGAGAAATATTACCAGGATTTGTTGGACCAAGAAACTAATTGTAGTGCAGATAACGAGAACAATATCCCATCTGGTGTACCGATAAAATTGAAAAAACAGATTGAGAAGGATATACCACGGACATTTCCTGGTCATCCTGCCCTGGATGAGAATGGTAGAGACTCCTTAAGGCGTTTACTTTTAGCATATGCTCTTCACAATCCCTCTGTTGGTTACTGTCAGGCAATGAATTTCTTTGCGGGCTTGTTGCTACTCCTGATGCCCGAGGAGAATGCCTTTTGGACTTTGGTTGGAATAATAGATGACTATTTTGATGGATATTACACTGAGGAAATGATAGAATCGCAGGTGGACCAGCTTGTTTTTGAGGAATTGATGCGTGAAAGATTTCCTAAATTGGTTAAACATTTGGATTACTTGGGAGTGCAAGTGGCATGGATCACAGGACCTTGGTTCCTTTCCATTTTTGTAAATATGCTTCCGTGGGAGAGTGTACTCCGAGTTTGGGATGTGCTTCTGTTTGAAGGCAACAGAGTCATGCTGTTCCGGACAGCACTTGCTTTGATGGAACTATATGGTCCTGCATTAGTTACTACAAAAGATGCGGGGGACGCCATAACTCTGTTACAATCCCTTGCTGGTTCCACATTTGATAGTAGCCAGCTTGTGTTGACTGCTTGCATGGGTTTTCTGACTGTAACTGAAGTAAGACTAGTAGAGTTGAGAGAAAAGCTCCGACCATCTGTGCTAGCTGTAATTGAAGAAAGAACAAAGAAGGGTCGGGTTTGGAAGGATTCCAAAGGGCTAGCTTCCAAGCTTTATAGTTTCAAGCATGATCCCGGATCACCTATGGAGAGGAAAAAGACAGCTGCAGGAGCCGATGTAGGATCCTGTACCCCTAATCTGGATGACTTCCTTAGTGGATTAGCCGGTGATTCAGAAACAGAATCACTCCCAGACCTTCAAGAACAAGTAGTATGGTTGAAGGTTGAGTTGTGCAGGTTGCTGGAGGAAAAAAGATCTGCGGTTCTAAGAGCCGAGGAGCTAGAAACAGCACTTATGGAAATGGTCACCCAAGATAACCGACGACTATTAAGTGCCAGGGTTGAACAACTGGAGATAGAGGTAGCCGAGCTAAAGAAAACTCTAGCAGAGAAGAAAGAACAAGAAGTTGCAATGCTTCAGTTGTTGATGCGTGTTGAGCAAGAGCAAAGAGTAACCGAGGAAGCTAGAATAAACGCCGAGCAAGACGTAGCAGCTCAAAAATATGCTGTTCATATGCTTCAGGATAAATATGAGAAAGCTATGGCTTCACTTGCTGAGATGGAGAAAAGGGTGGTGATGGCTGAATCCATGTTGGAGGCTACATTACAATATGAATCTGGCCAAATTAAAGCAATGTCGTCTCCTGGGTCGCGTAATCAAGGATCTGCACAGGAAAATCAAAGAAAGGTTGGTTTGCTGCCATTTGCACTAGGCTGGCGAGATCGAAACAAGCTTGAATTTCTATTCTCAAATTGGGTCGACTGGCGTAGCTTAGAGGATCTTTCTTTTAGTTTTCTTCACATTAGCAGAATGGAAAGGCTTTTTCTTTGGGTGAAGAACCTTAATTTCAGAGTGAAGTTCCAACAGCTAAGTGACCCGTTCAGGAGACCCACTAAAAGATACTGGATTCAACCTTAA | 4179 | 43.26 | MAALVEEVLPPSLDATAEQPPLFDGTTRLYTAYICPYAQRVWITRNYKGLQDKIKLVPLNLYNRPDWYKEKVYPINKVPSLEHNGKVIGESLDLIKYVDSNFEGPSLLPDDPAKREYAEELLSYSDTFNIAVASSFKGDTAKEAGAQFDYLENALQKFDGPFFLGEISQVDIAYIPFVERFQVFLLEALKIDITEGRPKLAAWIEELNKIDAYKQTKADPKLIVEAYTKRFLVEEMIRINYPTRRREFFDVCSVLSMYFGVFEAISLYVAARVCFLRFPIYTSLNEAAIYLIRRTSMASPYVEEIPPPSLDATTEQPPLFDGTTRLYTAYICPYAHRVWIIRNYKGLQHKIELVPLNLINRPDWYKEKVYPMNKVPSLEHNGKVIGESLDLLKYIDSNFEGPSLLPDPAKREYAEELLSYSETFNGAIIDSFKGDTAKEAGAQFDYLENALGKFDGPFLLGEISQVDIAYIPFVERFHIFLLEALKIDITEGRPKLLAWIEEFNKIDAYKQTKVDPKLVVEIYSMRFLREKERRRDRRNRSVSEDQVPFGEPPYSLRKSRNLADLLHPLMAERSMHMLHILEPRRDAYGFALRPQHTHRYREHANIYKEEEEERCDKWKNFLDQVATSFQVCPLEEANTNTLQAETSEHQEETVSGRSSTGDDSTGSKSDSVDTTDSVPTKLLEPPVETQKCIVQTWCQTRPSLNAIEIMMSSRVKKKIMKDEKTSNGGDHLPLLEEAESLEGTSVENSEEEEACFSGALNRSTSATGAESRMDESISNSVKPSERDGVVGDGVSQDHTWKEELECLVRGGLPKDLRGEVWQAFVGVKTRRIEKYYQDLLDQETNCSADNENNIPSGVPIKLKKQIEKDIPRTFPGHPALDENGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTLVGIIDDYFDGYYTEEMIESQVDQLVFEELMRERFPKLVKHLDYLGVQVAWITGPWFLSIFVNMLPWESVLRVWDVLLFEGNRVMLFRTALALMELYGPALVTTKDAGDAITLLQSLAGSTFDSSQLVLTACMGFLTVTEVRLVELREKLRPSVLAVIEERTKKGRVWKDSKGLASKLYSFKHDPGSPMERKKTAAGADVGSCTPNLDDFLSGLAGDSETESLPDLQEQVVWLKVELCRLLEEKRSAVLRAEELETALMEMVTQDNRRLLSARVEQLEIEVAELKKTLAEKKEQEVAMLQLLMRVEQEQRVTEEARINAEQDVAAQKYAVHMLQDKYEKAMASLAEMEKRVVMAESMLEATLQYESGQIKAMSSPGSRNQGSAQENQRKVGLLPFALGWRDRNKLEFLFSNWVDWRSLEDLSFSFLHISRMERLFLWVKNLNFRVKFQQLSDPFRRPTKRYWIQP | 1392 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 33967419 | 33987051 | - | CcPI632755_10g020590.1 | Cco10g2059 | 191017 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g2059 | 1392 | Pfam | Glutathione S-transferase, C-terminal domain | 146 | 205 | - | - | |
Cco10g2059 | 1392 | Pfam | Glutathione S-transferase, C-terminal domain | 442 | 501 | - | - | |
Cco10g2059 | 1392 | SUPERFAMILY | Thioredoxin-like | 317 | 404 | IPR036249 | - | |
Cco10g2059 | 1392 | Pfam | Rab-GTPase-TBC domain | 815 | 1026 | IPR000195 | - | |
Cco10g2059 | 1392 | ProSiteProfiles | Soluble glutathione S-transferase N-terminal domain profile. | 25 | 106 | IPR004045 | - | |
Cco10g2059 | 1392 | Coils | Coil | 1194 | 1249 | - | - | |
Cco10g2059 | 1392 | SFLD | Glutathione Transferase (cytosolic) | 325 | 503 | IPR040079 | - | |
Cco10g2059 | 1392 | SFLD | Glutathione Transferase (cytosolic) | 28 | 208 | IPR040079 | - | |
Cco10g2059 | 1392 | CDD | GST_C_Lambda | 111 | 227 | - | - | |
Cco10g2059 | 1392 | SUPERFAMILY | Ypt/Rab-GAP domain of gyp1p | 945 | 1060 | IPR035969 | - | |
Cco10g2059 | 1392 | Gene3D | - | 939 | 1078 | - | - | |
Cco10g2059 | 1392 | FunFam | Lambda class glutathione S-transferase | 104 | 234 | - | - | |
Cco10g2059 | 1392 | MobiDBLite | consensus disorder prediction | 760 | 778 | - | - | |
Cco10g2059 | 1392 | MobiDBLite | consensus disorder prediction | 657 | 678 | - | - | |
Cco10g2059 | 1392 | SUPERFAMILY | Thioredoxin-like | 20 | 107 | IPR036249 | - | |
Cco10g2059 | 1392 | ProSiteProfiles | TBC/rab GAP domain profile. | 811 | 1008 | IPR000195 | - | |
Cco10g2059 | 1392 | SUPERFAMILY | GST C-terminal domain-like | 102 | 231 | IPR036282 | - | |
Cco10g2059 | 1392 | Gene3D | - | 104 | 235 | - | - | |
Cco10g2059 | 1392 | Gene3D | - | 401 | 530 | - | - | |
Cco10g2059 | 1392 | MobiDBLite | consensus disorder prediction | 760 | 794 | - | - | |
Cco10g2059 | 1392 | SUPERFAMILY | GST C-terminal domain-like | 400 | 527 | IPR036282 | - | |
Cco10g2059 | 1392 | ProSiteProfiles | Soluble glutathione S-transferase N-terminal domain profile. | 322 | 403 | IPR004045 | - | |
Cco10g2059 | 1392 | FunFam | Ypt/Rab-GAP domain of gyp1p superfamily protein | 840 | 938 | - | - | |
Cco10g2059 | 1392 | SUPERFAMILY | Ypt/Rab-GAP domain of gyp1p | 796 | 968 | IPR035969 | - | |
Cco10g2059 | 1392 | MobiDBLite | consensus disorder prediction | 641 | 683 | - | - | |
Cco10g2059 | 1392 | Gene3D | Glutaredoxin | 1 | 103 | - | - | |
Cco10g2059 | 1392 | Gene3D | Glutaredoxin | 297 | 400 | - | - | |
Cco10g2059 | 1392 | PANTHER | GLUTATHIONE S-TRANSFERASE L1 | 2 | 243 | IPR044629 | GO:0004364(PANTHER)|GO:0004364(InterPro)|GO:0010731(PANTHER) | |
Cco10g2059 | 1392 | SFLD | Main (cytGST) | 28 | 208 | - | - | |
Cco10g2059 | 1392 | SMART | tbc_4 | 808 | 1032 | IPR000195 | - | |
Cco10g2059 | 1392 | FunFam | Glutathione S-transferase L2, chloroplastic | 1 | 103 | - | - | |
Cco10g2059 | 1392 | Coils | Coil | 1257 | 1284 | - | - | |
Cco10g2059 | 1392 | Pfam | Glutathione S-transferase, N-terminal domain | 326 | 402 | IPR004045 | - | |
Cco10g2059 | 1392 | Pfam | Glutathione S-transferase, N-terminal domain | 29 | 105 | IPR004045 | - | |
Cco10g2059 | 1392 | Gene3D | putative rabgap domain of human tbc1 domain family member 14 like domains | 828 | 938 | - | - | |
Cco10g2059 | 1392 | FunFam | Glutathione S-transferase L2, chloroplastic | 297 | 400 | - | - | |
Cco10g2059 | 1392 | FunFam | TBC1 domain family member 8B | 939 | 1079 | - | - | |
Cco10g2059 | 1392 | CDD | GST_C_Lambda | 407 | 523 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco10g2059 | Cco-Chr10:33967419 | Cco10g2060 | Cco-Chr10:33991514 | 2.00E-103 | tandem | |
Cco02g1056 | Cco-Chr2:13943155 | Cco10g2059 | Cco-Chr10:33967419 | 1.30E-42 | transposed | |
Cco02g1485 | Cco-Chr2:27343522 | Cco10g2059 | Cco-Chr10:33967419 | 1.10E-224 | transposed | |
Cco04g1097 | Cco-Chr4:26399239 | Cco10g2059 | Cco-Chr10:33967419 | 2.00E-26 | transposed | |
Cco10g2059 | Cco-Chr10:33967419 | Cco02g1483 | Cco-Chr2:27328043 | 4.80E-89 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g2059 | - | - | - | 0.0 |