Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g2060 ATGGCTACTCCAACTGTCGTATCGGAAGTTCGTCCGCCGTCATTGGAAGCCGACGCCGAACAACCTCCCCTCTTCGACGGAACCACCAGGTTGTATGTGGCTTACTATTGCCCATTTGCACAACGTGCTTGGATTACAAGAAATTACAAGGGATTAGAGGATAAAATTAAATTAGTGCCTCTAAACCTTCAAAACAGGCCTGCTTGGTATAAGGAAAAAGTCTACCCAACAAACAAGGTGCCAGCATTGGAACACAATGGAAAAGTTATTGGAGAAAGCCTTGATTTGATCAAATACATAGATAGCAACTTTGAAGGGCCTTCTCTTTTTCCAGATGATCCTGTTAAAAGACAATTTGGTGAAGAGTTGCTAGCTTATACCGAAACATTTACTGGGGCAATATACCCTTCATTTAAGGGTGACCCAGCTAAGGAAGCAGGTCCTCAATTTGATTACTTGGAGAATGCTCTTCAGAAATTTGATGATGGCCCATTCTTTTTGGGTCAATTCAGTGGGGTGGATATTGCATACATCACATTTATTGAAAGATTCCATGTGTTCTTAAATGAAGTTTTCAAGTATGACATCATAGAAGGAAGACCTAATCTAGCTGCATGGATTGAGGAATTCAATAAGCTTGATGCTTACAAGCAAACAAAATATGATCCTAAAGCGATTGTTGAACTTTACAAGAAGCGCTTCATGGTACGACATGCTTCTTAA 723 40.39 MATPTVVSEVRPPSLEADAEQPPLFDGTTRLYVAYYCPFAQRAWITRNYKGLEDKIKLVPLNLQNRPAWYKEKVYPTNKVPALEHNGKVIGESLDLIKYIDSNFEGPSLFPDDPVKRQFGEELLAYTETFTGAIYPSFKGDPAKEAGPQFDYLENALQKFDDGPFFLGQFSGVDIAYITFIERFHVFLNEVFKYDIIEGRPNLAAWIEEFNKLDAYKQTKYDPKAIVELYKKRFMVRHAS 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33991514 33995468 - CcPI632755_10g020600.1 Cco10g2060 191018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g2060 240 Gene3D Glutaredoxin 2 105 - -
Cco10g2060 240 CDD GST_C_Lambda 113 231 - -
Cco10g2060 240 FunFam Glutathione S-transferase L2, chloroplastic 2 105 - -
Cco10g2060 240 PANTHER GLUTATHIONE S-TRANSFERASE L1 6 238 IPR044629 GO:0004364(PANTHER)|GO:0004364(InterPro)|GO:0010731(PANTHER)
Cco10g2060 240 SUPERFAMILY Thioredoxin-like 21 109 IPR036249 -
Cco10g2060 240 SFLD Glutathione Transferase (cytosolic) 30 210 IPR040079 -
Cco10g2060 240 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 27 108 IPR004045 -
Cco10g2060 240 SUPERFAMILY GST C-terminal domain-like 104 234 IPR036282 -
Cco10g2060 240 Gene3D - 106 238 - -
Cco10g2060 240 Pfam Glutathione S-transferase, N-terminal domain 31 107 IPR004045 -
Cco10g2060 240 FunFam Lambda class glutathione S-transferase 106 237 - -
Cco10g2060 240 Pfam Glutathione S-transferase, C-terminal domain 150 208 - -
Cco10g2060 240 SFLD Main (cytGST) 30 210 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1483 Cco-Chr2:27328043 Cco10g2060 Cco-Chr10:33991514 2.10E-87 dispersed
Cco10g2059 Cco-Chr10:33967419 Cco10g2060 Cco-Chr10:33991514 2.00E-103 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g2060 K00799 - csv:101210004 452.595