Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g2064 ATGGAAGAATTAGAACCCCCCACTGTCATCATGGCCGCCCTCTCCGCCCTCTCTCCGCCGTGTCTCTCCGATCTCTCCCACTCCATTTTCTCCGACATTCACCACCACCGCCGCCGCCTCACCTTCATCCTCTCTTCCCCAACACTCTTCTCCCTCACTCTCCGCCACCTCAATTCCCTCTCCCTCTCCCACAAATCTCTCCTCCTCGCCCGCTTCCTCCTCTCCGCCCTCCGCCGCCTCTCCCGCCCCTTCCAGCCACCATCCAAGCTCCTCCCTTACCACCCTTCCACCGCCGCCATCTCCCCTCAAGACCTCGACGCCGCCGTCCTCCTCCTCCTCCTCTGCGAGGTCCGGCAACACAATCCAGCCGCCCTCCGAACTCCGATCACTAAATGGCGTGCGACCCTCTGTAGAATCTACTCCGATTCCCTCTTGACGATCTCAGGTGTCGCCACCGGCGGGGGTGGGGCTTTGATTCCGTTCATTGAGACGGTGGTGAGGTGTTGGAAGTTCGTGGGGTTTGTTGGGAGTTGCGGAGGGAAGGCCCGGAGAGAGGTGGCGGCGTCGCCTGTGGCGGTGGTGGAGCTGCCGTCGGTGGCGATGGGTGGTGGCGGTGGTGCGGCGGTGGAATGTGTGATTTGTAAAGAGGAGATGAGAGAAGGGAGAGACGCGTGTAAATTGCCTTGTGACCACTTATTCCATTGGCTCTGTATTTTGCCATGGCTGAGGAAAAGGAACACGTGTCCCTGTTGTAGGTTTCAGCTTCCCACTGATGATATTTTCGGAGAGATCCAACGGCTCTGGGAGATCCTCCTCAAAGTGGGCTCCACGATGTGTCCATCTGATGGAGATTAA 855 58.95 MEELEPPTVIMAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLARFLLSALRRLSRPFQPPSKLLPYHPSTAAISPQDLDAAVLLLLLCEVRQHNPAALRTPITKWRATLCRIYSDSLLTISGVATGGGGALIPFIETVVRCWKFVGFVGSCGGKARREVAASPVAVVELPSVAMGGGGGAAVECVICKEEMREGRDACKLPCDHLFHWLCILPWLRKRNTCPCCRFQLPTDDIFGEIQRLWEILLKVGSTMCPSDGD 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34012721 34013575 - CcPI632755_10g020640.1 Cco10g2064 191022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g2064 284 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 258 IPR013083 -
Cco10g2064 284 SMART ring_2 211 251 IPR001841 -
Cco10g2064 284 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 183 257 - GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Cco10g2064 284 Pfam Ring finger domain 210 252 IPR001841 -
Cco10g2064 284 SUPERFAMILY RING/U-box 204 258 - -
Cco10g2064 284 ProSiteProfiles Zinc finger RING-type profile. 211 252 IPR001841 -
Cco10g2064 284 CDD RING-H2_PA-TM-RING 210 252 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0763 Cco-Chr8:19443339 Cco10g2064 Cco-Chr10:34012721 1.50E-07 dispersed
Cco10g2064 Cco-Chr10:34012721 Cco10g2115 Cco-Chr10:34430058 2.80E-12 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g2064 - - - 0.0