Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g2071 ATGCCGAGAAAAGGAATGAGGAGTCTCCTTTTCCAGTTCTCGTCGCCGTCGAATTCCATTTCCAGGTATTCCATCTCGTCGCCGTCCAGAACTCCGGCATCGACTCCACGCCGGAGCTTCAACGACGCGATGATCGAACAGAGCATCGAATCTGCCGCGGCGATTGTGATGAAATGGAATCCAGATTCTTCAACGTACGCCAAAGTTACTTCCATGTTCTATGAAGACAAAAGAGAAGCCATGCAGTTCATTAAGCGTGTGAATGATCTTCAAAAAGCGATGCATCTTATTGCTTCGGAAGATTCCGCTTCCGCTTCCGATCGCCTTGTTTACGCTCAAACTTTGATGGAAATCGCCATGAAAAGACTTCAGAAGGAGTTTTATCAGATTCTCTCCATGAATCGTGCTCATCTAGATCCGGAATCTGTTTCCACTAGATCCTCTCGCTGCTCCACCAGATCGAGCACTTCCGTTGATTTCGACGATGACGGAACCCTAGACGATGAAATCCAAGCCATAGACGATTCGATCTCTGAAGTTGAGCAAGTTTCTTTCATTGTAATGGAGGATTTACGAGCAATAGCCGAGTGTATGATCTCCTCTGGCTACGCTAAAGAATGCGTTAATATGTATAAAGTGATTCGAAAATCGATTATCGATGAAGGTGTGTACCGCCTCGGACTTGAGAAATTGAGCGCTTCGAGAATCAACAAAATGGATTGGGAGGTGCTTGATCTTAAAATCAAGAACTGGTTGGATGCAATTAAACTCGCAATTAGAACGTTGTTCGTTGGCGAACGAATTCTCTGTGATCACGTCTTTTCCTCTTCTGAATCCATTAGAGAATCATGTTTTGCTGATATATCTAGAGAAGGCGCTCTGCTTCTGTTTGGATTCCCTGAACTTGTTGCAAAGAGTAAAAAGTCTCCGGAAAAAATGTTCCGTGTTCTTGATATGTACTCATCAATCTCCGAAAATTGGCCGGACATCGAATCGATTTTCTCATCTGAATCCTCGTCTGTAGTTCGATCTCAAGCTCTAACCTCACTCGCGAAACTCGGCGAGTTAGTCCGGGCCATAGTTATGGATCTCGAAGTCTCGATTCAGAAAAACTCATCCAAATCGCCGGTTGCTGGTGGTGGCGTTCATTCCTTAACTCTTCTCTCGATGAACTACCTCACTTTCCTCGCCGATTACGGCAATATTTTGACGGATATTTTCGCTGATTGGACTCCGCCTGAAAAATCCTCTCTCGAACAAATCTTCTTCAACAGTTCAGAATCCGACGATTCTCCAACGGCTTCAGCAATCTCTTTACGAATGGGATGGCTAATTCTAGTCCTCCTCTGCAAACTCGACAGCAAAGCAAAGCGCTACAAAGACGTTTCACTCTCGTATCTGTTCCTCGCTAACAATCTTCAACACATCGTCTCTAAAGTCCGATCGTCGAATCTTCAGTACCTTCTCGGCGACGAGTGGATCACGAAGCAGGAGGCGAAAGTAAGGCAATTCGCGGCGAAGTACGAAGCATTGGCTTGGGGAAGAGTCTTCGATTCTTTGCCGGAGAATCCAACTGAGAGATTCTCACAGGAAGAAGCCAAAGAAATCTTCAGGAATTTCAATATGGCATTCCAAGAAACTCATCGGAAACAGAAATCTTTCTTCATTCCTGATTCAAAGCTTAGAGACGAAGTTAAATTATCAATCGGTAGAAAGCTTGTTTGGTTCTATGGAGAATTTTACAGAGCGCAAAAAGCTTATGCTGGTGGTAATGAAAAGCCGTACATCAGATTCTCCCCGGAAGATATCGGTAACTACCTTTCAGATCTCTATTTTGAACCGTCCGATTGGGCGAGCGTTTCCACCTCGTCGCCGTCGTCCACCTCCTCCTCTCACCGGCGGGAACCGGGACCCCGTTAA 1920 45.36 MPRKGMRSLLFQFSSPSNSISRYSISSPSRTPASTPRRSFNDAMIEQSIESAAAIVMKWNPDSSTYAKVTSMFYEDKREAMQFIKRVNDLQKAMHLIASEDSASASDRLVYAQTLMEIAMKRLQKEFYQILSMNRAHLDPESVSTRSSRCSTRSSTSVDFDDDGTLDDEIQAIDDSISEVEQVSFIVMEDLRAIAECMISSGYAKECVNMYKVIRKSIIDEGVYRLGLEKLSASRINKMDWEVLDLKIKNWLDAIKLAIRTLFVGERILCDHVFSSSESIRESCFADISREGALLLFGFPELVAKSKKSPEKMFRVLDMYSSISENWPDIESIFSSESSSVVRSQALTSLAKLGELVRAIVMDLEVSIQKNSSKSPVAGGGVHSLTLLSMNYLTFLADYGNILTDIFADWTPPEKSSLEQIFFNSSESDDSPTASAISLRMGWLILVLLCKLDSKAKRYKDVSLSYLFLANNLQHIVSKVRSSNLQYLLGDEWITKQEAKVRQFAAKYEALAWGRVFDSLPENPTERFSQEEAKEIFRNFNMAFQETHRKQKSFFIPDSKLRDEVKLSIGRKLVWFYGEFYRAQKAYAGGNEKPYIRFSPEDIGNYLSDLYFEPSDWASVSTSSPSSTSSSHRREPGPR 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34080336 34082255 - CcPI632755_10g020710.1 Cco10g2071 191029

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g2071 639 FunFam Exocyst subunit Exo70 family protein 66 618 - -
Cco10g2071 639 Gene3D Exocyst complex component Exo70 56 617 - -
Cco10g2071 639 Pfam Exocyst complex component Exo70 N-terminal 49 132 - -
Cco10g2071 639 Pfam Exo70 exocyst complex subunit C-terminal 249 609 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Cco10g2071 639 MobiDBLite consensus disorder prediction 617 639 - -
Cco10g2071 639 SUPERFAMILY Cullin repeat-like 75 611 IPR016159 -
Cco10g2071 639 PANTHER EXOCYST COMPLEX PROTEIN EXO70 47 612 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Cco10g2071 639 MobiDBLite consensus disorder prediction 18 38 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g2071 K07195 - - csv:101208543 1100.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0205 Cco-Chr3:2123041 Cco10g2071 Cco-Chr10:34080336 3.50E-164 dispersed
Cco10g2071 Cco-Chr10:34080336 Cco11g0616 Cco-Chr11:6629000 1.80E-11 dispersed
Cco01g0910 Cco-Chr1:10083358 Cco10g2071 Cco-Chr10:34080336 1.20E-72 transposed
Cco10g2071 Cco-Chr10:34080336 Cco02g2189 Cco-Chr2:34543628 1.40E-173 wgd
Cco10g2071 Cco-Chr10:34080336 Cco02g1463 Cco-Chr2:27059440 5.90E-143 wgd
Cco10g2071 Cco-Chr10:34080336 Cco04g1050 Cco-Chr4:26051444 8.00E-140 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g639 . . . . Bpe04g01604 . . . . . . . . . . . . Bhi03g01622 . . . Hepe04g0889 . . . . . . . . . . . . . . Csa04g01453 . . . . . . . . . . . . . . . . . . . . . . . . . . Cla10g01975 Cam10g2045 Cec10g2088 Cco10g2071 Clacu10g2053 Cmu10g2801 Cre10g2192 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco05g2453 . 12 653 EXO70 exocyst subunit family AT5G03540 75.7 4.0e-283 970.7
Cco04g1257 . 1 638 EXO70 exocyst subunit family AT5G03540 71.0 7.5e-266 913.3
Cco04g1257 . 1 638 EXO70 exocyst subunit family AT5G52340 80.3 8.3e-299 1022.7
Cco05g2453 . 14 653 EXO70 exocyst subunit family AT5G52340 74.2 5.6e-271 930.2
Cco04g1257 . 145 631 EXO70 exocyst subunit family AT5G52350 63.9 2.2e-176 615.9
Cco05g2453 . 149 653 EXO70 exocyst subunit family AT5G52350 59.1 3.0e-165 578.9
Cco03g0049 . 1 623 EXO70 exocyst subunit family AT5G58430 66.9 3.6e-246 847.8
Cco03g0049 . 1 622 EXO70 exocyst subunit family AT1G07000 52.4 1.0e-173 607.1
Cco07g1615 . 63 676 EXO70 exocyst subunit family AT5G13150 53.3 1.3e-174 610.1
Cco01g0910 . 109 720 EXO70 exocyst subunit family AT5G13990 54.0 1.5e-187 653.3
Cco07g1527 . 9 609 EXO70 exocyst subunit family AT1G72470 65.2 4.7e-217 751.1
Cco07g1527 . 9 607 EXO70 exocyst subunit family AT1G54090 62.0 1.3e-208 723.0
Cco07g1527 . 9 608 EXO70 exocyst subunit family AT3G14090 64.4 8.4e-219 756.9
Cco03g1393 . 27 664 EXO70 exocyst subunit family AT5G50380 62.1 3.2e-227 785.0
Cco03g0373 . 18 630 EXO70 exocyst subunit family AT5G50380 61.1 4.9e-212 734.6
Cco08g1418 . 13 682 EXO70 exocyst subunit family AT4G31540 73.6 6.7e-294 1006.5
Cco10g2071 . 35 630 EXO70 exocyst subunit family AT3G09520 56.1 5.0e-179 624.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007378 1 1 2 1 2 1 0 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 2 2 1 1 36