Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g2081 | ATGGTCGACGATACCGACATTAGTGAGTGTTGCAAGACAATGCTTGATGAAGGAGGCGCCAAAGGATCTCAGATCCGTAGTTCTTGGGAATCCAATCGAAGGCTCTGCTGCTCGCCGCTTGGATTTTTTCTGTCATTTCCTTTTATTCTTGAGTTGTTCTCATCGGATTCTTCATTTTTAGGTTTCAGGAAAGGCGTCGAGGTTTTCTCGAAGTTTAGCATTCGAATTCTCAGGCTATACCGGATTTTTATTTGGAGGAATATATATTGGATGGGAGAAGAAGCAGCTGGTTTGGCTGCAGTTACAAATGAGCCGTTGGGGAAAGAGAGCGCTTCGAGTACCGAATTGAAGCGGGACCATCAGTGTCTTGATGAAGATACGGAACCTGAGTCTTTGCATAACAAGAAGCAAGCAAAAGAAGTGTCGAATGAAGACGTTCTGTCAGAAGTTTCGAATCCCGTAATTTCTCCGAAAGGGAATCATTTCCAAGATATTACTAGCCAACCTGACGAGCTAGAAAATACCAACCAAGTTGAGCGCGGGGAGCTTACATCGGCTTGTTCGGGGAATTCAAGCTCGGAGGATATCTCAAGCGATGGAATTCGTTGCCAGAATGACGCGTCTCGAAATGACGCTGATATGTGTGATGTTGATGAGGTCTCTCGGTTTGTGATTGAAATTCCTAAGCATACTAGTTCGACTGGCATTAGGAAGATTACGTTCAAGTTCAGCAAAAAGAAGGACAACAATGGCGCATCCATGTCAGCAGACAAAGTTCATTCTTATGGGAACTCTGACAAGGACGGTAGACCTGAACCTTCATTGGTTGATGATGCTTGTACGGAGACATCTGCACATAGCTGGGAAGGCTGTGCTGAGAGCAGCAGGTATCCTTTAGGTCCAAATAAAATGGAATTGAAAATGTCGAAGAAGGTTTTACCAAACAATTATCCGTCGAATGTTAAAAAGCTGCTGTCGACTGGTATACTTGATGGAGCTCGAGTCAAATATGTATCGACGACAAGCGAGATGAAGCTAAATGGTATTATAAATGGCGGAGGTTACGTGTGCGGATGTTCAATATGCAACTATACAGCTATCCTCAGTGCTTATGAGTTTGAGCAGCATGCTGGTTTCAAGACTAGACATCCAAATAATCATATATACTTGGAGAATGGGAGGCCGATTTATAGTGTCATACAGGAAATTAAGAGTGCACCTCTTAGCATATTAGATGAAGTGATTAAGGAAGTGGCAGGTTCATCTGTAAACTTGGATTCATTTGAGGCTTGGAAAGCAAGTTTCCACCAGAACAGTGCAACTATTGAAGTGGAAAATGATGATGTGAAGCTTCCTAAATTGTCACATCCCATTGAGAGAGCAAGCCCTAACTTTTCCAATCCAGTCATTCAACACAAAAAAACGGCAGAAAAAGGCACAAAAAGAAGGGATAATGATCTTCACAGACTACTTTTCATGCCAAATGGCCTTCCAGATGGGGCCGAGCTGGCATACTTTGTCAAAGGACAGAGAATACTTGGAGGCTACAAGCAAGGAAATGGTATTCTATGTAGTCACTGTAATCGAGAGATTAGCCCTTCCCAGTTTGAAGCCCATGCAGGGATGGCTGCCAGACGTCAACCGTACCGCCACATTTATACTACTAATGGACTTACACTTCATGATATTGCCATTTCCTTGGCTAGTGGGCAAAAACTTACCACAGGAGACAGTGATGATATGTGTGCTGCATGTGGTAGTGGAGGAGATTTGATTTTCTGTGATCGCTGCCCTCGAGCTTACCATACAGGCTGCCTGCATCTACAGAATGTTCCTGAAGGAGTTTGGTCTTGCCCAAACTGTAGAGATAAAGTGGGTTCCAGTTCGAAGGTTGCTTCCGGAGGTTCTTTGAGTTTTTCAAAACCAATTGTATTTAGGTTGACCCGAGTTGTTAAAGCACCCGAGTATGAAATTGGTGGTTGTGTTGTTTGCAGGCGACATGATTTCAGTGCTGCTAAGTTTGATGATCGAACTGTACTGCTTTGTGATCAATGTGAAAGAGAATTCCATGTAGGCTGTCTGCGGGATAGTGGATTATGTGATCTGAAGGAACTCCCAAAGGATAAGTGGTTCTGCTGTGACGAGTGCAGTAATATCCATGTGGCCCTTCAGAACACAGTTCTGAATGGGGCACAGATCATTCCAGATTCATTATCAGATTTAATAATCAGAAAGCATGTTGGAAAAGGATTATTAGTTGATGGAGCTCTGAGTGATGTTCGGTGGCAAATTTTAAGTGGAAAAAGTCGCTATCCAGAAGATCTTCCATTTCTTTCAAGGGCAACTGCTATTTTTCGAGAATGTTTTGATCCTATTGTTGCAAAATCAGGTCGTGATCTGATACCGGTTATGGTTTATGGGAGAAATATATCTGGACAAGAGTTTGGAGGAATGTATTGTGTTGTTTTAATTGTGAGGTCAATAGTTGTATCGGCTGGTCTTCTTAGGATCTTTGGTCGTGAAGTTGCCGAGCTTCCTATTGTTGCCACAAGTAGAGAACACCAGGGCAAGGGTTACTTCCAAGTATTGTTTTCCTGTATAGAGCGGCTACTTTCTTCCCTAAATGTGCAAAACCTTGTACTCCCGGCAGCCGAGGATGCTGAATCAATTTGGACCAAGAAATTGGGCTTCAGAAAGATGAGTGAAGAACAATTGATGAAGTACATGAGGGAGGTCCAGCTGACGATCTTCAATGGAACATCGATGCTAGAGAAGGTGGTGCAGCGGCTGACGTTATAA | 2799 | 43.23 | MVDDTDISECCKTMLDEGGAKGSQIRSSWESNRRLCCSPLGFFLSFPFILELFSSDSSFLGFRKGVEVFSKFSIRILRLYRIFIWRNIYWMGEEAAGLAAVTNEPLGKESASSTELKRDHQCLDEDTEPESLHNKKQAKEVSNEDVLSEVSNPVISPKGNHFQDITSQPDELENTNQVERGELTSACSGNSSSEDISSDGIRCQNDASRNDADMCDVDEVSRFVIEIPKHTSSTGIRKITFKFSKKKDNNGASMSADKVHSYGNSDKDGRPEPSLVDDACTETSAHSWEGCAESSRYPLGPNKMELKMSKKVLPNNYPSNVKKLLSTGILDGARVKYVSTTSEMKLNGIINGGGYVCGCSICNYTAILSAYEFEQHAGFKTRHPNNHIYLENGRPIYSVIQEIKSAPLSILDEVIKEVAGSSVNLDSFEAWKASFHQNSATIEVENDDVKLPKLSHPIERASPNFSNPVIQHKKTAEKGTKRRDNDLHRLLFMPNGLPDGAELAYFVKGQRILGGYKQGNGILCSHCNREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLTTGDSDDMCAACGSGGDLIFCDRCPRAYHTGCLHLQNVPEGVWSCPNCRDKVGSSSKVASGGSLSFSKPIVFRLTRVVKAPEYEIGGCVVCRRHDFSAAKFDDRTVLLCDQCEREFHVGCLRDSGLCDLKELPKDKWFCCDECSNIHVALQNTVLNGAQIIPDSLSDLIIRKHVGKGLLVDGALSDVRWQILSGKSRYPEDLPFLSRATAIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSIVVSAGLLRIFGREVAELPIVATSREHQGKGYFQVLFSCIERLLSSLNVQNLVLPAAEDAESIWTKKLGFRKMSEEQLMKYMREVQLTIFNGTSMLEKVVQRLTL | 932 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 34170807 | 34181658 | - | CcPI632755_10g020810.1 | Cco10g2081 | 191039 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g2081 | 932 | Pfam | PHD-finger | 582 | 621 | IPR019787 | - | |
Cco10g2081 | 932 | ProSiteProfiles | Zinc finger PHD-type profile. | 658 | 719 | IPR019787 | - | |
Cco10g2081 | 932 | MobiDBLite | consensus disorder prediction | 144 | 170 | - | - | |
Cco10g2081 | 932 | MobiDBLite | consensus disorder prediction | 184 | 205 | - | - | |
Cco10g2081 | 932 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 570 | 641 | IPR013083 | - | |
Cco10g2081 | 932 | MobiDBLite | consensus disorder prediction | 109 | 170 | - | - | |
Cco10g2081 | 932 | SMART | PHD_3 | 660 | 717 | IPR001965 | - | |
Cco10g2081 | 932 | SMART | PHD_3 | 581 | 622 | IPR001965 | - | |
Cco10g2081 | 932 | SUPERFAMILY | FYVE/PHD zinc finger | 659 | 714 | IPR011011 | - | |
Cco10g2081 | 932 | Pfam | Tify domain binding domain | 348 | 402 | IPR032308 | - | |
Cco10g2081 | 932 | Pfam | Tify domain binding domain | 515 | 564 | IPR032308 | - | |
Cco10g2081 | 932 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 659 | 719 | IPR013083 | - | |
Cco10g2081 | 932 | ProSiteProfiles | Zinc finger PHD-type profile. | 579 | 624 | IPR019787 | - | |
Cco10g2081 | 932 | MobiDBLite | consensus disorder prediction | 247 | 277 | - | - | |
Cco10g2081 | 932 | MobiDBLite | consensus disorder prediction | 111 | 143 | - | - | |
Cco10g2081 | 932 | MobiDBLite | consensus disorder prediction | 261 | 275 | - | - | |
Cco10g2081 | 932 | ProSitePatterns | Zinc finger PHD-type signature. | 661 | 716 | IPR019786 | - | |
Cco10g2081 | 932 | MobiDBLite | consensus disorder prediction | 184 | 209 | - | - | |
Cco10g2081 | 932 | ProSitePatterns | Zinc finger PHD-type signature. | 582 | 621 | IPR019786 | - | |
Cco10g2081 | 932 | Gene3D | - | 763 | 928 | - | - | |
Cco10g2081 | 932 | FunFam | PHD zinc finger protein | 659 | 719 | - | - | |
Cco10g2081 | 932 | FunFam | PHD finger family protein | 759 | 926 | - | - | |
Cco10g2081 | 932 | SUPERFAMILY | FYVE/PHD zinc finger | 577 | 624 | IPR011011 | - | |
Cco10g2081 | 932 | PANTHER | AUTOIMMUNE REGULATOR | 117 | 928 | - | GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER) | |
Cco10g2081 | 932 | SUPERFAMILY | Acyl-CoA N-acyltransferases (Nat) | 816 | 904 | IPR016181 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g2180 | Cco-Chr2:34464007 | Cco10g2081 | Cco-Chr10:34170807 | 7.10E-40 | dispersed | |
Cco02g2321 | Cco-Chr2:35652572 | Cco10g2081 | Cco-Chr10:34170807 | 7.10E-156 | dispersed | |
Cco10g1957 | Cco-Chr10:33136967 | Cco10g2081 | Cco-Chr10:34170807 | 2.10E-145 | dispersed | |
Cco10g2081 | Cco-Chr10:34170807 | Cco07g0316 | Cco-Chr7:3175628 | 2.30E-42 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60192 | PF16135 | TDBD | 6.10E-12 | No_clan | Cco | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g2081 | - | - | - | 0.0 |