Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g2081 ATGGTCGACGATACCGACATTAGTGAGTGTTGCAAGACAATGCTTGATGAAGGAGGCGCCAAAGGATCTCAGATCCGTAGTTCTTGGGAATCCAATCGAAGGCTCTGCTGCTCGCCGCTTGGATTTTTTCTGTCATTTCCTTTTATTCTTGAGTTGTTCTCATCGGATTCTTCATTTTTAGGTTTCAGGAAAGGCGTCGAGGTTTTCTCGAAGTTTAGCATTCGAATTCTCAGGCTATACCGGATTTTTATTTGGAGGAATATATATTGGATGGGAGAAGAAGCAGCTGGTTTGGCTGCAGTTACAAATGAGCCGTTGGGGAAAGAGAGCGCTTCGAGTACCGAATTGAAGCGGGACCATCAGTGTCTTGATGAAGATACGGAACCTGAGTCTTTGCATAACAAGAAGCAAGCAAAAGAAGTGTCGAATGAAGACGTTCTGTCAGAAGTTTCGAATCCCGTAATTTCTCCGAAAGGGAATCATTTCCAAGATATTACTAGCCAACCTGACGAGCTAGAAAATACCAACCAAGTTGAGCGCGGGGAGCTTACATCGGCTTGTTCGGGGAATTCAAGCTCGGAGGATATCTCAAGCGATGGAATTCGTTGCCAGAATGACGCGTCTCGAAATGACGCTGATATGTGTGATGTTGATGAGGTCTCTCGGTTTGTGATTGAAATTCCTAAGCATACTAGTTCGACTGGCATTAGGAAGATTACGTTCAAGTTCAGCAAAAAGAAGGACAACAATGGCGCATCCATGTCAGCAGACAAAGTTCATTCTTATGGGAACTCTGACAAGGACGGTAGACCTGAACCTTCATTGGTTGATGATGCTTGTACGGAGACATCTGCACATAGCTGGGAAGGCTGTGCTGAGAGCAGCAGGTATCCTTTAGGTCCAAATAAAATGGAATTGAAAATGTCGAAGAAGGTTTTACCAAACAATTATCCGTCGAATGTTAAAAAGCTGCTGTCGACTGGTATACTTGATGGAGCTCGAGTCAAATATGTATCGACGACAAGCGAGATGAAGCTAAATGGTATTATAAATGGCGGAGGTTACGTGTGCGGATGTTCAATATGCAACTATACAGCTATCCTCAGTGCTTATGAGTTTGAGCAGCATGCTGGTTTCAAGACTAGACATCCAAATAATCATATATACTTGGAGAATGGGAGGCCGATTTATAGTGTCATACAGGAAATTAAGAGTGCACCTCTTAGCATATTAGATGAAGTGATTAAGGAAGTGGCAGGTTCATCTGTAAACTTGGATTCATTTGAGGCTTGGAAAGCAAGTTTCCACCAGAACAGTGCAACTATTGAAGTGGAAAATGATGATGTGAAGCTTCCTAAATTGTCACATCCCATTGAGAGAGCAAGCCCTAACTTTTCCAATCCAGTCATTCAACACAAAAAAACGGCAGAAAAAGGCACAAAAAGAAGGGATAATGATCTTCACAGACTACTTTTCATGCCAAATGGCCTTCCAGATGGGGCCGAGCTGGCATACTTTGTCAAAGGACAGAGAATACTTGGAGGCTACAAGCAAGGAAATGGTATTCTATGTAGTCACTGTAATCGAGAGATTAGCCCTTCCCAGTTTGAAGCCCATGCAGGGATGGCTGCCAGACGTCAACCGTACCGCCACATTTATACTACTAATGGACTTACACTTCATGATATTGCCATTTCCTTGGCTAGTGGGCAAAAACTTACCACAGGAGACAGTGATGATATGTGTGCTGCATGTGGTAGTGGAGGAGATTTGATTTTCTGTGATCGCTGCCCTCGAGCTTACCATACAGGCTGCCTGCATCTACAGAATGTTCCTGAAGGAGTTTGGTCTTGCCCAAACTGTAGAGATAAAGTGGGTTCCAGTTCGAAGGTTGCTTCCGGAGGTTCTTTGAGTTTTTCAAAACCAATTGTATTTAGGTTGACCCGAGTTGTTAAAGCACCCGAGTATGAAATTGGTGGTTGTGTTGTTTGCAGGCGACATGATTTCAGTGCTGCTAAGTTTGATGATCGAACTGTACTGCTTTGTGATCAATGTGAAAGAGAATTCCATGTAGGCTGTCTGCGGGATAGTGGATTATGTGATCTGAAGGAACTCCCAAAGGATAAGTGGTTCTGCTGTGACGAGTGCAGTAATATCCATGTGGCCCTTCAGAACACAGTTCTGAATGGGGCACAGATCATTCCAGATTCATTATCAGATTTAATAATCAGAAAGCATGTTGGAAAAGGATTATTAGTTGATGGAGCTCTGAGTGATGTTCGGTGGCAAATTTTAAGTGGAAAAAGTCGCTATCCAGAAGATCTTCCATTTCTTTCAAGGGCAACTGCTATTTTTCGAGAATGTTTTGATCCTATTGTTGCAAAATCAGGTCGTGATCTGATACCGGTTATGGTTTATGGGAGAAATATATCTGGACAAGAGTTTGGAGGAATGTATTGTGTTGTTTTAATTGTGAGGTCAATAGTTGTATCGGCTGGTCTTCTTAGGATCTTTGGTCGTGAAGTTGCCGAGCTTCCTATTGTTGCCACAAGTAGAGAACACCAGGGCAAGGGTTACTTCCAAGTATTGTTTTCCTGTATAGAGCGGCTACTTTCTTCCCTAAATGTGCAAAACCTTGTACTCCCGGCAGCCGAGGATGCTGAATCAATTTGGACCAAGAAATTGGGCTTCAGAAAGATGAGTGAAGAACAATTGATGAAGTACATGAGGGAGGTCCAGCTGACGATCTTCAATGGAACATCGATGCTAGAGAAGGTGGTGCAGCGGCTGACGTTATAA 2799 43.23 MVDDTDISECCKTMLDEGGAKGSQIRSSWESNRRLCCSPLGFFLSFPFILELFSSDSSFLGFRKGVEVFSKFSIRILRLYRIFIWRNIYWMGEEAAGLAAVTNEPLGKESASSTELKRDHQCLDEDTEPESLHNKKQAKEVSNEDVLSEVSNPVISPKGNHFQDITSQPDELENTNQVERGELTSACSGNSSSEDISSDGIRCQNDASRNDADMCDVDEVSRFVIEIPKHTSSTGIRKITFKFSKKKDNNGASMSADKVHSYGNSDKDGRPEPSLVDDACTETSAHSWEGCAESSRYPLGPNKMELKMSKKVLPNNYPSNVKKLLSTGILDGARVKYVSTTSEMKLNGIINGGGYVCGCSICNYTAILSAYEFEQHAGFKTRHPNNHIYLENGRPIYSVIQEIKSAPLSILDEVIKEVAGSSVNLDSFEAWKASFHQNSATIEVENDDVKLPKLSHPIERASPNFSNPVIQHKKTAEKGTKRRDNDLHRLLFMPNGLPDGAELAYFVKGQRILGGYKQGNGILCSHCNREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLTTGDSDDMCAACGSGGDLIFCDRCPRAYHTGCLHLQNVPEGVWSCPNCRDKVGSSSKVASGGSLSFSKPIVFRLTRVVKAPEYEIGGCVVCRRHDFSAAKFDDRTVLLCDQCEREFHVGCLRDSGLCDLKELPKDKWFCCDECSNIHVALQNTVLNGAQIIPDSLSDLIIRKHVGKGLLVDGALSDVRWQILSGKSRYPEDLPFLSRATAIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSIVVSAGLLRIFGREVAELPIVATSREHQGKGYFQVLFSCIERLLSSLNVQNLVLPAAEDAESIWTKKLGFRKMSEEQLMKYMREVQLTIFNGTSMLEKVVQRLTL 932
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34170807 34181658 - CcPI632755_10g020810.1 Cco10g2081 191039

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g2081 932 Pfam PHD-finger 582 621 IPR019787 -
Cco10g2081 932 ProSiteProfiles Zinc finger PHD-type profile. 658 719 IPR019787 -
Cco10g2081 932 MobiDBLite consensus disorder prediction 144 170 - -
Cco10g2081 932 MobiDBLite consensus disorder prediction 184 205 - -
Cco10g2081 932 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 570 641 IPR013083 -
Cco10g2081 932 MobiDBLite consensus disorder prediction 109 170 - -
Cco10g2081 932 SMART PHD_3 660 717 IPR001965 -
Cco10g2081 932 SMART PHD_3 581 622 IPR001965 -
Cco10g2081 932 SUPERFAMILY FYVE/PHD zinc finger 659 714 IPR011011 -
Cco10g2081 932 Pfam Tify domain binding domain 348 402 IPR032308 -
Cco10g2081 932 Pfam Tify domain binding domain 515 564 IPR032308 -
Cco10g2081 932 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 659 719 IPR013083 -
Cco10g2081 932 ProSiteProfiles Zinc finger PHD-type profile. 579 624 IPR019787 -
Cco10g2081 932 MobiDBLite consensus disorder prediction 247 277 - -
Cco10g2081 932 MobiDBLite consensus disorder prediction 111 143 - -
Cco10g2081 932 MobiDBLite consensus disorder prediction 261 275 - -
Cco10g2081 932 ProSitePatterns Zinc finger PHD-type signature. 661 716 IPR019786 -
Cco10g2081 932 MobiDBLite consensus disorder prediction 184 209 - -
Cco10g2081 932 ProSitePatterns Zinc finger PHD-type signature. 582 621 IPR019786 -
Cco10g2081 932 Gene3D - 763 928 - -
Cco10g2081 932 FunFam PHD zinc finger protein 659 719 - -
Cco10g2081 932 FunFam PHD finger family protein 759 926 - -
Cco10g2081 932 SUPERFAMILY FYVE/PHD zinc finger 577 624 IPR011011 -
Cco10g2081 932 PANTHER AUTOIMMUNE REGULATOR 117 928 - GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
Cco10g2081 932 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 816 904 IPR016181 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g2081 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2180 Cco-Chr2:34464007 Cco10g2081 Cco-Chr10:34170807 7.10E-40 dispersed
Cco02g2321 Cco-Chr2:35652572 Cco10g2081 Cco-Chr10:34170807 7.10E-156 dispersed
Cco10g1957 Cco-Chr10:33136967 Cco10g2081 Cco-Chr10:34170807 2.10E-145 dispersed
Cco10g2081 Cco-Chr10:34170807 Cco07g0316 Cco-Chr7:3175628 2.30E-42 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g694 . . . . Bpe04g01561 . Bma04g01614 . Cmo06g00314 Cmo14g00154 . . . . . . Cpe08g01153 . . . . . . . . . . . . . . Cone3ag0322 . Cone13ag1327 Cone19ag1312 . . . Cme04g02602 . . Bda03g01749 Bda05g01208 . . . . Sed02g0695 . . Cma06g00312 . Car06g00270 Car14g00139 Cpe03g00132 . Bhi11g02231 Tan08g1981 Cmetu08g1975 . . . . Cla10g01990 Cam10g2058 Cec10g2099 Cco10g2081 Clacu10g2063 Cmu10g2811 Cre10g2204 Lsi03g02089 Csa03g03200 Chy04g02130 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco10g2081 . 108 927 PHD Transcription Factor Family AT3G53680 53.6 4.3e-250 861.3
Cco07g0316 . 436 565 PHD Transcription Factor Family AT3G53680 54.6 1.2e-37 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005462 1 2 0 1 1 1 2 1 1 1 1 1 3 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60192 PF16135 TDBD 6.10E-12 No_clan Cco TR