Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g2081 ATGGTCGACGATACCGACATTAGTGAGTGTTGCAAGACAATGCTTGATGAAGGAGGCGCCAAAGGATCTCAGATCCGTAGTTCTTGGGAATCCAATCGAAGGCTCTGCTGCTCGCCGCTTGGATTTTTTCTGTCATTTCCTTTTATTCTTGAGTTGTTCTCATCGGATTCTTCATTTTTAGGTTTCAGGAAAGGCGTCGAGGTTTTCTCGAAGTTTAGCATTCGAATTCTCAGGCTATACCGGATTTTTATTTGGAGGAATATATATTGGATGGGAGAAGAAGCAGCTGGTTTGGCTGCAGTTACAAATGAGCCGTTGGGGAAAGAGAGCGCTTCGAGTACCGAATTGAAGCGGGACCATCAGTGTCTTGATGAAGATACGGAACCTGAGTCTTTGCATAACAAGAAGCAAGCAAAAGAAGTGTCGAATGAAGACGTTCTGTCAGAAGTTTCGAATCCCGTAATTTCTCCGAAAGGGAATCATTTCCAAGATATTACTAGCCAACCTGACGAGCTAGAAAATACCAACCAAGTTGAGCGCGGGGAGCTTACATCGGCTTGTTCGGGGAATTCAAGCTCGGAGGATATCTCAAGCGATGGAATTCGTTGCCAGAATGACGCGTCTCGAAATGACGCTGATATGTGTGATGTTGATGAGGTCTCTCGGTTTGTGATTGAAATTCCTAAGCATACTAGTTCGACTGGCATTAGGAAGATTACGTTCAAGTTCAGCAAAAAGAAGGACAACAATGGCGCATCCATGTCAGCAGACAAAGTTCATTCTTATGGGAACTCTGACAAGGACGGTAGACCTGAACCTTCATTGGTTGATGATGCTTGTACGGAGACATCTGCACATAGCTGGGAAGGCTGTGCTGAGAGCAGCAGGTATCCTTTAGGTCCAAATAAAATGGAATTGAAAATGTCGAAGAAGGTTTTACCAAACAATTATCCGTCGAATGTTAAAAAGCTGCTGTCGACTGGTATACTTGATGGAGCTCGAGTCAAATATGTATCGACGACAAGCGAGATGAAGCTAAATGGTATTATAAATGGCGGAGGTTACGTGTGCGGATGTTCAATATGCAACTATACAGCTATCCTCAGTGCTTATGAGTTTGAGCAGCATGCTGGTTTCAAGACTAGACATCCAAATAATCATATATACTTGGAGAATGGGAGGCCGATTTATAGTGTCATACAGGAAATTAAGAGTGCACCTCTTAGCATATTAGATGAAGTGATTAAGGAAGTGGCAGGTTCATCTGTAAACTTGGATTCATTTGAGGCTTGGAAAGCAAGTTTCCACCAGAACAGTGCAACTATTGAAGTGGAAAATGATGATGTGAAGCTTCCTAAATTGTCACATCCCATTGAGAGAGCAAGCCCTAACTTTTCCAATCCAGTCATTCAACACAAAAAAACGGCAGAAAAAGGCACAAAAAGAAGGGATAATGATCTTCACAGACTACTTTTCATGCCAAATGGCCTTCCAGATGGGGCCGAGCTGGCATACTTTGTCAAAGGACAGAGAATACTTGGAGGCTACAAGCAAGGAAATGGTATTCTATGTAGTCACTGTAATCGAGAGATTAGCCCTTCCCAGTTTGAAGCCCATGCAGGGATGGCTGCCAGACGTCAACCGTACCGCCACATTTATACTACTAATGGACTTACACTTCATGATATTGCCATTTCCTTGGCTAGTGGGCAAAAACTTACCACAGGAGACAGTGATGATATGTGTGCTGCATGTGGTAGTGGAGGAGATTTGATTTTCTGTGATCGCTGCCCTCGAGCTTACCATACAGGCTGCCTGCATCTACAGAATGTTCCTGAAGGAGTTTGGTCTTGCCCAAACTGTAGAGATAAAGTGGGTTCCAGTTCGAAGGTTGCTTCCGGAGGTTCTTTGAGTTTTTCAAAACCAATTGTATTTAGGTTGACCCGAGTTGTTAAAGCACCCGAGTATGAAATTGGTGGTTGTGTTGTTTGCAGGCGACATGATTTCAGTGCTGCTAAGTTTGATGATCGAACTGTACTGCTTTGTGATCAATGTGAAAGAGAATTCCATGTAGGCTGTCTGCGGGATAGTGGATTATGTGATCTGAAGGAACTCCCAAAGGATAAGTGGTTCTGCTGTGACGAGTGCAGTAATATCCATGTGGCCCTTCAGAACACAGTTCTGAATGGGGCACAGATCATTCCAGATTCATTATCAGATTTAATAATCAGAAAGCATGTTGGAAAAGGATTATTAGTTGATGGAGCTCTGAGTGATGTTCGGTGGCAAATTTTAAGTGGAAAAAGTCGCTATCCAGAAGATCTTCCATTTCTTTCAAGGGCAACTGCTATTTTTCGAGAATGTTTTGATCCTATTGTTGCAAAATCAGGTCGTGATCTGATACCGGTTATGGTTTATGGGAGAAATATATCTGGACAAGAGTTTGGAGGAATGTATTGTGTTGTTTTAATTGTGAGGTCAATAGTTGTATCGGCTGGTCTTCTTAGGATCTTTGGTCGTGAAGTTGCCGAGCTTCCTATTGTTGCCACAAGTAGAGAACACCAGGGCAAGGGTTACTTCCAAGTATTGTTTTCCTGTATAGAGCGGCTACTTTCTTCCCTAAATGTGCAAAACCTTGTACTCCCGGCAGCCGAGGATGCTGAATCAATTTGGACCAAGAAATTGGGCTTCAGAAAGATGAGTGAAGAACAATTGATGAAGTACATGAGGGAGGTCCAGCTGACGATCTTCAATGGAACATCGATGCTAGAGAAGGTGGTGCAGCGGCTGACGTTATAA 2799 43.23 MVDDTDISECCKTMLDEGGAKGSQIRSSWESNRRLCCSPLGFFLSFPFILELFSSDSSFLGFRKGVEVFSKFSIRILRLYRIFIWRNIYWMGEEAAGLAAVTNEPLGKESASSTELKRDHQCLDEDTEPESLHNKKQAKEVSNEDVLSEVSNPVISPKGNHFQDITSQPDELENTNQVERGELTSACSGNSSSEDISSDGIRCQNDASRNDADMCDVDEVSRFVIEIPKHTSSTGIRKITFKFSKKKDNNGASMSADKVHSYGNSDKDGRPEPSLVDDACTETSAHSWEGCAESSRYPLGPNKMELKMSKKVLPNNYPSNVKKLLSTGILDGARVKYVSTTSEMKLNGIINGGGYVCGCSICNYTAILSAYEFEQHAGFKTRHPNNHIYLENGRPIYSVIQEIKSAPLSILDEVIKEVAGSSVNLDSFEAWKASFHQNSATIEVENDDVKLPKLSHPIERASPNFSNPVIQHKKTAEKGTKRRDNDLHRLLFMPNGLPDGAELAYFVKGQRILGGYKQGNGILCSHCNREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLTTGDSDDMCAACGSGGDLIFCDRCPRAYHTGCLHLQNVPEGVWSCPNCRDKVGSSSKVASGGSLSFSKPIVFRLTRVVKAPEYEIGGCVVCRRHDFSAAKFDDRTVLLCDQCEREFHVGCLRDSGLCDLKELPKDKWFCCDECSNIHVALQNTVLNGAQIIPDSLSDLIIRKHVGKGLLVDGALSDVRWQILSGKSRYPEDLPFLSRATAIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSIVVSAGLLRIFGREVAELPIVATSREHQGKGYFQVLFSCIERLLSSLNVQNLVLPAAEDAESIWTKKLGFRKMSEEQLMKYMREVQLTIFNGTSMLEKVVQRLTL 932
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34170807 34181658 - CcPI632755_10g020810.1 Cco10g2081 191039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g2081 932 Pfam PHD-finger 582 621 IPR019787 -
Cco10g2081 932 ProSiteProfiles Zinc finger PHD-type profile. 658 719 IPR019787 -
Cco10g2081 932 MobiDBLite consensus disorder prediction 144 170 - -
Cco10g2081 932 MobiDBLite consensus disorder prediction 184 205 - -
Cco10g2081 932 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 570 641 IPR013083 -
Cco10g2081 932 MobiDBLite consensus disorder prediction 109 170 - -
Cco10g2081 932 SMART PHD_3 660 717 IPR001965 -
Cco10g2081 932 SMART PHD_3 581 622 IPR001965 -
Cco10g2081 932 SUPERFAMILY FYVE/PHD zinc finger 659 714 IPR011011 -
Cco10g2081 932 Pfam Tify domain binding domain 348 402 IPR032308 -
Cco10g2081 932 Pfam Tify domain binding domain 515 564 IPR032308 -
Cco10g2081 932 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 659 719 IPR013083 -
Cco10g2081 932 ProSiteProfiles Zinc finger PHD-type profile. 579 624 IPR019787 -
Cco10g2081 932 MobiDBLite consensus disorder prediction 247 277 - -
Cco10g2081 932 MobiDBLite consensus disorder prediction 111 143 - -
Cco10g2081 932 MobiDBLite consensus disorder prediction 261 275 - -
Cco10g2081 932 ProSitePatterns Zinc finger PHD-type signature. 661 716 IPR019786 -
Cco10g2081 932 MobiDBLite consensus disorder prediction 184 209 - -
Cco10g2081 932 ProSitePatterns Zinc finger PHD-type signature. 582 621 IPR019786 -
Cco10g2081 932 Gene3D - 763 928 - -
Cco10g2081 932 FunFam PHD zinc finger protein 659 719 - -
Cco10g2081 932 FunFam PHD finger family protein 759 926 - -
Cco10g2081 932 SUPERFAMILY FYVE/PHD zinc finger 577 624 IPR011011 -
Cco10g2081 932 PANTHER AUTOIMMUNE REGULATOR 117 928 - GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
Cco10g2081 932 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 816 904 IPR016181 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2180 Cco-Chr2:34464007 Cco10g2081 Cco-Chr10:34170807 7.10E-40 dispersed
Cco02g2321 Cco-Chr2:35652572 Cco10g2081 Cco-Chr10:34170807 7.10E-156 dispersed
Cco10g1957 Cco-Chr10:33136967 Cco10g2081 Cco-Chr10:34170807 2.10E-145 dispersed
Cco10g2081 Cco-Chr10:34170807 Cco07g0316 Cco-Chr7:3175628 2.30E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60192 PF16135 TDBD 6.10E-12 No_clan Cco TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g2081 - - - 0.0