Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g2091 ATGAATTTTTCCTCCATTCCTGCTTATCTTGATCCTTCCAACTGGCAACAGCAAGTCACCCATCAAGTGGGAAGCAGTAGTAGCACTGGAGTTAGTTCTCAGCTTCTACCACCGCCGCTGCCGCCGCCTCCACCGCCGCCTCCCCCCCCACCCCATGGGGTCGGCGGTGCCAGTTCGATCCGCCCTGGTTCGATGGCCGAGCGAGCTCGAATGGCTAATATTCCGATGCCTGAGGCAGCATTGAAATGCCCAAGATGTGAATCAACCAATACTAAGTTCTGTTACTTCAACAATTACAGCCTCACTCAGCCTCGCCACTTTTGCAAGACTTGTAGAAGGTACTGGACCAGGGGTGGGGCCCTACGGAACGTCCCGGTTGGGGGTGGGTGCCGGAGGAACAAAAGAAGCAAAGGGAGCAGTTCGAAGTCGCCACCGGTCAGCTCGGACCGACAACAAACCAGCGGTTCAGGCAATTCTTCATCAAGTGCAATAGCTCCCAACAACAGTGGAGGCCTTTCCCCACAGATCCCACCACTCGGCCGGTTCATGGCTCCTCTCCATCAACAGCTCAGTGACTTCGACATCGGTGGTTTCAGCTATGGTGGTGGCCTCTCAGCTCCTGCCACCGCCACCGGTGACCTGAGTTTCCAATTGGGCAACACTAATTTAGCTGGAGGAACAAGCATCGGATCTCTCTTGGGATTTGACCAACAATGGAGGCTCCAGCAACAACCTCCCCAATTTCCCTTCTTGTCCGGGTTAGACCCTTTCGACGGCGGTAGCAGTAGTGGCGGAGAAGGACCCGGACCCGGCTGGCAAATGAGGCCAAAATTACCATCAAGTTCAAGGAATGTAAGCCAAATGGGGAATTCAGTGAAAATGGAAGAAACCCCAGATCAAGTTAATAATGCTGGAAGACAATTTCTTGGGAATGAACAATATTGGAGCAGTGGATCAATGGCATGGTCAGATCTTTCTGGTTTCAGTTCTTCATCTTCAACAAGAAACCCATTATAG 1017 52.41 MNFSSIPAYLDPSNWQQQVTHQVGSSSSTGVSSQLLPPPLPPPPPPPPPPPHGVGGASSIRPGSMAERARMANIPMPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGSSSKSPPVSSDRQQTSGSGNSSSSAIAPNNSGGLSPQIPPLGRFMAPLHQQLSDFDIGGFSYGGGLSAPATATGDLSFQLGNTNLAGGTSIGSLLGFDQQWRLQQQPPQFPFLSGLDPFDGGSSSGGEGPGPGWQMRPKLPSSSRNVSQMGNSVKMEETPDQVNNAGRQFLGNEQYWSSGSMAWSDLSGFSSSSSTRNPL 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34267190 34268646 - CcPI632755_10g020910.1 Cco10g2091 191049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g2091 338 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 68 161 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g2091 338 MobiDBLite consensus disorder prediction 16 34 - -
Cco10g2091 338 SUPERFAMILY Formin homology 2 domain (FH2 domain) 41 51 - -
Cco10g2091 338 ProSitePatterns Zinc finger Dof-type signature. 83 119 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco10g2091 338 MobiDBLite consensus disorder prediction 16 61 - -
Cco10g2091 338 ProSiteProfiles Zinc finger Dof-type profile. 81 135 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco10g2091 338 MobiDBLite consensus disorder prediction 122 180 - -
Cco10g2091 338 MobiDBLite consensus disorder prediction 35 55 - -
Cco10g2091 338 MobiDBLite consensus disorder prediction 252 308 - -
Cco10g2091 338 MobiDBLite consensus disorder prediction 139 174 - -
Cco10g2091 338 MobiDBLite consensus disorder prediction 277 308 - -
Cco10g2091 338 Pfam Dof domain, zinc finger 80 135 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1733 Cco-Chr8:28613434 Cco10g2091 Cco-Chr10:34267190 1.60E-24 dispersed
Cco10g0781 Cco-Chr10:13711640 Cco10g2091 Cco-Chr10:34267190 5.80E-28 dispersed
Cco10g1583 Cco-Chr10:29078686 Cco10g2091 Cco-Chr10:34267190 2.40E-22 dispersed
Cco10g1816 Cco-Chr10:31782147 Cco10g2091 Cco-Chr10:34267190 3.10E-26 dispersed
Cco10g2091 Cco-Chr10:34267190 Cco02g2164 Cco-Chr2:34377155 1.80E-37 wgd
Cco10g2091 Cco-Chr10:34267190 Cco03g0165 Cco-Chr3:1615655 3.40E-41 wgd
Cco10g2091 Cco-Chr10:34267190 Cco04g1020 Cco-Chr4:25795764 3.60E-38 wgd
Cco10g2091 Cco-Chr10:34267190 Cco05g1076 Cco-Chr5:9579135 1.20E-22 wgd
Cco10g2091 Cco-Chr10:34267190 Cco07g0327 Cco-Chr7:3355164 3.20E-47 wgd
Cco10g2091 Cco-Chr10:34267190 Cco09g2189 Cco-Chr9:36236490 8.00E-30 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60193 PF02701 zf-Dof 3.40E-32 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g2091 - - - 0.0