Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g2105 ATGACCCCAGATAAAGAACTTAGAAAGTCGGGACATTACGTAGATAATTGTTCTTTTGGGGTTCAAGCACAAGAGAGCGCTCATGGGAGGCCTAAATTTCAGAATACCATTTTTAGTCATAACTTTCAAGAATTTGATTGCCTTCTCCCCGATCCATCACCAAGTAACATAGCCTCAAGTTCCAGTATTATAACCTCCTCTTCTAATGACGCGAGTCATGAGGAAGATTATCTGGAAGATTGCGATTTTTCTGATGCTGTTTTGACATTCATAAATCAGATTCTCATGGAAGAAGACATGGAGGACAAGACTTGCATGCTTCAAGATTCTTTGGATCTTCAAGCCGCTGAGAAATCATTCTATGAGGTCCTTGGAAAAAAATATCCTCCTTCCCCAGAGCCAAATAGATCTCTGGCCGATCAATACAGTGATAGCTTGAATGAAGAACTTTGTGGAGATAGTAGTAATTACCGGAATGGTTACAGTAATGCTTCTTATTGTGGTAATGATAACCCTTCTCAAACCGTGAGTGAAGATATACTTCAAACCAGAAGCACTTTAGGGGATACCATTTCTCCATCATCCAATAGTTCCTCAAATAGTATCATTAGCGGGGCTGATGGGTGGGTGGAATTCTCGAATAATACAATTCAAGTTCCTGAGCCCAATAACAGAAGCCAATCTATTTGGCAGTTTCAAAAAGGGTTTGAAGAGGCAAGCAAATTTTTACCTGGTGGAAACAAATTGTGTCTTGATATTGAGGTAAATGGGTCAGCAACTCAGGGTTTGGATGAGGGAACGAGCCAGGTGTATTTGAAGGCAGCAAGAAAGGATCAGAGGAATATTTTGTCACTTGAATCACGCGGAAGAAAGAATCCTCATGATGAGAATGGAGATTTGGAAGAAGAGAGAAGCAGCAAGCAAGCAGCTGTATTTACGGAGTCGACCTTGCGATCTAAGATGTTTGATATTGTGTTGCTTCATAGTGCTGGAGAGGGGCATGAACGGTTAGTTTCATTTCGACAGGAATTACATAATGCTAAAATCAAAAGCATGCTGCAGAGTGGGCAACTAAAAGTGTCTAGTGGTGGGAGGGGTCGTCGGAAGAAGCAAAGTGGGAAAAGAGAGGTTGTGGATTTGAGAACTCTTTTAATTAGCTGTGCTCAGGCTGTTGCAGCTGATGACCATAGGAATGCCAGTGAGCTTCTAAAGCAGGTCAGACAACATGCTTCTCCTTTTGGGGATGGAAGCCAGAGGTTGGCTAGTTGTTTTGCTGATGGTCTAGAGGCACGCTTGGCAGGTACTGGTAGCCAGATTTACAATGGTCTAATTAATAAAAGAACATCTGCTGCTGATGTACTGAAAGCTTACCACTTGTACCTTGCTGCATGTCCATTTAGAAAGATTTCTAATTTTACTTCAAACAGGACTATAATGATTGCTGCTGAGAATGCAACTAAGCTTCATGTCGTAGATTTTGGTATCCTTTACGGTTTCCAGTGGCCTACTTTAATCCAGAGATTGTCATGGAGAAAAGACGGACCTCCAAAGCTTCGAATTACTGGAATAGAATTTCCCCAGCCTGGGTTTCGTCCTGCAGAGAGAGTGGAGGAGACAGGTCGTCGTTTGGCGGCCTATGCAGAGAGTTTCAACGTGCCATTTGAGTATAATGCTATAGCAAAAAAATGGGAAACTATTACGGTCGAAGATCTCAATATCGATCAAGATGAGTTCCTAGTCGTTAACTGTTTGTATCGAGCAAAAAATTTGCTTGATGAGAGTGTCGCCACAGAGAGTGCTAGAAATACTGTTCTTAGATTGATACACAAAATTAGTCCCAACTTATTCATCAGTGGCGTTGTCAATGGAGCATATAATGCTCCTTTCTTTGTTACCCGATTTCGAGAAGCTTTGTTCCATTTTTCTGCTATTTTTGATATGCTTGAAACCGTCGTACCTCGCGAGGATTGGGAGAGAATGCTTTTGGAGAGAGAGATCTTTGGCAGGGAGGCCCTAAATGTTATAGCATGTGAGGGATGGGAGAGAGTGGAAAGACCAGAAACATACAAGCAGTGGCAATTTCGGATCATGAGGGCTGGATTTGTGCAACTGCCTTTTCATCCTGAGATTTTTGAGAGAGCAGTTGAAAAGGTACGGTCAAGTTACCACAGAGATTTTCTGATTGATGAAGATAGCAGGTGGATACTGCAAGGATGGAAAGCTATTCAAACTGAAAGAGATTGCTTGAGGACCAAGGGGTTAACTGTGGAGCTGCTGTTTCAAATTTAA 2289 42.03 MTPDKELRKSGHYVDNCSFGVQAQESAHGRPKFQNTIFSHNFQEFDCLLPDPSPSNIASSSSIITSSSNDASHEEDYLEDCDFSDAVLTFINQILMEEDMEDKTCMLQDSLDLQAAEKSFYEVLGKKYPPSPEPNRSLADQYSDSLNEELCGDSSNYRNGYSNASYCGNDNPSQTVSEDILQTRSTLGDTISPSSNSSSNSIISGADGWVEFSNNTIQVPEPNNRSQSIWQFQKGFEEASKFLPGGNKLCLDIEVNGSATQGLDEGTSQVYLKAARKDQRNILSLESRGRKNPHDENGDLEEERSSKQAAVFTESTLRSKMFDIVLLHSAGEGHERLVSFRQELHNAKIKSMLQSGQLKVSSGGRGRRKKQSGKREVVDLRTLLISCAQAVAADDHRNASELLKQVRQHASPFGDGSQRLASCFADGLEARLAGTGSQIYNGLINKRTSAADVLKAYHLYLAACPFRKISNFTSNRTIMIAAENATKLHVVDFGILYGFQWPTLIQRLSWRKDGPPKLRITGIEFPQPGFRPAERVEETGRRLAAYAESFNVPFEYNAIAKKWETITVEDLNIDQDEFLVVNCLYRAKNLLDESVATESARNTVLRLIHKISPNLFISGVVNGAYNAPFFVTRFREALFHFSAIFDMLETVVPREDWERMLLEREIFGREALNVIACEGWERVERPETYKQWQFRIMRAGFVQLPFHPEIFERAVEKVRSSYHRDFLIDEDSRWILQGWKAIQTERDCLRTKGLTVELLFQI 762
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34362288 34364764 + CcPI632755_10g021050.1 Cco10g2105 191063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g2105 762 MobiDBLite consensus disorder prediction 355 375 - -
Cco10g2105 762 ProSiteProfiles GRAS family profile. 371 751 IPR005202 -
Cco10g2105 762 Pfam GRAS domain family 380 740 IPR005202 -
Cco10g2105 762 MobiDBLite consensus disorder prediction 283 308 - -
Cco10g2105 762 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 350 740 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1314 Cco-Chr4:28481038 Cco10g2105 Cco-Chr10:34362288 2.00E-16 transposed
Cco04g1706 Cco-Chr4:32218525 Cco10g2105 Cco-Chr10:34362288 1.10E-41 transposed
Cco07g0988 Cco-Chr7:22781696 Cco10g2105 Cco-Chr10:34362288 1.30E-42 transposed
Cco07g1164 Cco-Chr7:25370241 Cco10g2105 Cco-Chr10:34362288 1.00E-37 transposed
Cco08g0688 Cco-Chr8:18235219 Cco10g2105 Cco-Chr10:34362288 3.10E-27 transposed
Cco10g0360 Cco-Chr10:4204461 Cco10g2105 Cco-Chr10:34362288 6.10E-37 transposed
Cco10g0378 Cco-Chr10:4435509 Cco10g2105 Cco-Chr10:34362288 2.10E-39 transposed
Cco10g2105 Cco-Chr10:34362288 Cco02g2141 Cco-Chr2:34191314 8.60E-157 wgd
Cco10g2105 Cco-Chr10:34362288 Cco03g0141 Cco-Chr3:1373861 1.60E-150 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60195 PF03514 GRAS 6.70E-111 CL0063 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g2105 K27753 - csv:101205887 1330.08