Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g2120 ATGGCCCAACCCTGTTTTCTCTGTTTCTTCTTCTTCCTCTGCGTCGCCGGCCCCGCCGCATCTCAGCAGCTCTACTTCGCTGGATTTCATGACGCCGCCGCCGCCGCCGCCAACTTAACCCTCACTGACATCGCCAAGATCGAGCAGAACGGAATCTTAAAGCTCACAAATGACACCAGTCGATTACAGGGTCATGCCTTTTACAGTTCCCCTGTTCGCTTCAAAAACTCTTCCGACGGCAAAGCTTTTTCCTTCTCCACCGCTTTTGTCATCGCCGTCGTCCCCGAATACCCGACTCTGGGCGGCCATGGACTCGCCTTCACCATTGCCCATTCGAAGAACCTCCGTGGACTTCCCAGTCAGTATTTAGGCCTTCTCAATGCGACCGACGTCGGAAACTTCACGAACCATCTCTTCGCCGTCGAGTTCGACACCGTTCAAGATTTTGAGTTCGGCGACATCAACGACAACCACGTCGGAATCAATCTCAACAATATGGTTTCTAATGCCTCCACCACCGCTTCCTATTTCGTCGACGATGGACCCACCAAGCAGAATCTAACCCTAAAAAGTGGGAGGCCGATTCAAGCTTGGATCGATTACGATTCCTCTGTAAATTCACTCACGGTTGCGCTTTCTCCGTTTTCAACCAAACCCAAGAAGCCGATTCTGTCGTTTAATGTAGATCTCTCTCCGATTCTTCAGGAGTCTATGTACGTTGGGTTCTCGGCCTCAACTGGGCTTCTTGCAAGTTCGCACTATGTGTTGGGATGGAGTTTCAGTATGAATGGACCAGCTGAGTCTCTGGATCTGTCTTCTTTGCCTTCTGTTCCAGGTCCGAAGAAGAAGCACACTGGTTTTACAATTGGGGTTTCTGTTGCGGCCGTTTTGATTGTGGTAATCGCGATTTGTGTTGCTGTTTTAATCATTTGGAAGATAAAAAACGCTGATATAATCGAGGCCTGGGAGCACGAAATCGGCCCTCATCGGTACTCTTACAAGGAGCTCAAGCAAGCGACTAAGCGATTTAGGGATAAAGAGCTCTTAGGGCGTGGTGGGTTTGGGAAAGTTTACAAAGGGACTTTGCCGAATTCGAAAACCCAAGTGGCTGTGAAGCGGATTTCTCACGAATCGAAACAGGGCCTAAGGGAATTTGTGTCGGAAATCGCTAGCATTGGCCGGCTTCGTCACCGGAACTTGGTTCAGTTGCTGGGATGGTGTCGCCGCCGTGGCGATCTGCTTCTGGTTTATGATTTCATGGCTAATGGGAGCTTGGATAACTACATTTTCGACGACCCGGATGTGAATCTGAGTTGGGAACAAAGGTTCAGAATCATTAAGGGCGTCGCCTCCGGTTTGCTCTACTTGCACGAAGGCTACGAGCAGGTGGTGATTCATAGAGATGTGAAGGCCAGTAATGTCCTGCTCGACGGCGAGATGAATGGGAAGCTCGGCGATTTCGGCCTGGCTCGACTATACGAACACGGGGCAAACCCGAGCACGACTCGGGTCGTCGGCACTCTGGGATATCTGGCGCCGGAGTTACCCAGAACAGGGAAGGCCACCACCAGCTCAGATGTGTATGCCTTCGGCGCACTTCTGCTAGAAGTGGCTTGCGGACGGCGGCCGATCGACCCGAAATCTTCGTCGGAAGAGCTAGTGCTGGTGGATTGGGTGTGGGAGAATTACAGGGAAGGGAAATTGCTGGAAGTAATGGATCCAAAATTGAAAGGGGATTTCAATGTAGCTGAGGCAGTGATGATTTTGAAGCTGGGGTTGTTCTGTTCGAACGATTCGGCGGCGGCGCGGCCTACTATGAGGCAGGTGGTGAGGTTTCTGGAGGGGGAGATTGGAGTTCCTGAGGAGATATCAGCGCCGAAAGTGGTGGAAGGAGGGAGGAATGGTGAAGGGTTCGATGATTTTGTGAATTCATTTGCATCTTCTTCCTTTAACAAGTTTAGTTCTTATTCATCGACTGGAAATAGGGATATGGATATGAGTTTTGCTTCATTTTCAACTTCTCCTCTTTCACTTCTCAACGGCAGAGACTAA 2052 50.49 MAQPCFLCFFFFLCVAGPAASQQLYFAGFHDAAAAAANLTLTDIAKIEQNGILKLTNDTSRLQGHAFYSSPVRFKNSSDGKAFSFSTAFVIAVVPEYPTLGGHGLAFTIAHSKNLRGLPSQYLGLLNATDVGNFTNHLFAVEFDTVQDFEFGDINDNHVGINLNNMVSNASTTASYFVDDGPTKQNLTLKSGRPIQAWIDYDSSVNSLTVALSPFSTKPKKPILSFNVDLSPILQESMYVGFSASTGLLASSHYVLGWSFSMNGPAESLDLSSLPSVPGPKKKHTGFTIGVSVAAVLIVVIAICVAVLIIWKIKNADIIEAWEHEIGPHRYSYKELKQATKRFRDKELLGRGGFGKVYKGTLPNSKTQVAVKRISHESKQGLREFVSEIASIGRLRHRNLVQLLGWCRRRGDLLLVYDFMANGSLDNYIFDDPDVNLSWEQRFRIIKGVASGLLYLHEGYEQVVIHRDVKASNVLLDGEMNGKLGDFGLARLYEHGANPSTTRVVGTLGYLAPELPRTGKATTSSDVYAFGALLLEVACGRRPIDPKSSSEELVLVDWVWENYREGKLLEVMDPKLKGDFNVAEAVMILKLGLFCSNDSAAARPTMRQVVRFLEGEIGVPEEISAPKVVEGGRNGEGFDDFVNSFASSSFNKFSSYSSTGNRDMDMSFASFSTSPLSLLNGRD 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34452961 34455108 - CcPI632755_10g021200.1 Cco10g2120 191078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g2120 683 SUPERFAMILY Protein kinase-like (PK-like) 324 626 IPR011009 -
Cco10g2120 683 Gene3D - 22 263 - -
Cco10g2120 683 FunFam L-type lectin-domain containing receptor kinase S.4 20 268 - -
Cco10g2120 683 CDD lectin_legume_LecRK_Arcelin_ConA 26 264 IPR001220 GO:0030246(InterPro)
Cco10g2120 683 PANTHER - 40 633 IPR050528 GO:0005886(PANTHER)
Cco10g2120 683 CDD STKc_IRAK 349 615 - -
Cco10g2120 683 SMART serkin_6 343 613 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g2120 683 Gene3D Phosphorylase Kinase; domain 1 328 419 - -
Cco10g2120 683 Gene3D Transferase(Phosphotransferase) domain 1 420 628 - -
Cco10g2120 683 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 282 IPR013320 -
Cco10g2120 683 ProSiteProfiles Protein kinase domain profile. 343 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g2120 683 FunFam L-type lectin-domain containing receptor kinase S.4 420 626 - -
Cco10g2120 683 Pfam Protein kinase domain 344 551 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g2120 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g2120 683 Pfam Legume lectin domain 23 274 IPR001220 GO:0030246(InterPro)
Cco10g2120 683 FunFam Lectin-domain containing receptor kinase A4.3 328 419 - -
Cco10g2120 683 ProSitePatterns Protein kinases ATP-binding region signature. 349 372 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0992 Cco-Chr4:25519287 Cco10g2120 Cco-Chr10:34452961 2.90E-188 dispersed
Cco05g1128 Cco-Chr5:10322185 Cco10g2120 Cco-Chr10:34452961 2.00E-26 dispersed
Cco06g0806 Cco-Chr6:9477820 Cco10g2120 Cco-Chr10:34452961 3.00E-65 dispersed
Cco07g0279 Cco-Chr7:2871059 Cco10g2120 Cco-Chr10:34452961 6.40E-127 dispersed
Cco10g0777 Cco-Chr10:13171002 Cco10g2120 Cco-Chr10:34452961 3.50E-109 dispersed
Cco10g2027 Cco-Chr10:33702384 Cco10g2120 Cco-Chr10:34452961 9.60E-49 dispersed
Cco10g2034 Cco-Chr10:33759257 Cco10g2120 Cco-Chr10:34452961 3.20E-40 dispersed
Cco10g2120 Cco-Chr10:34452961 Cco10g2222 Cco-Chr10:35234425 2.60E-152 dispersed
Cco08g0798 Cco-Chr8:19829150 Cco10g2120 Cco-Chr10:34452961 3.20E-94 transposed
Cco10g2120 Cco-Chr10:34452961 Cco04g0990 Cco-Chr4:25499392 1.40E-214 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87181 PF00069 Pkinase 6.00E-46 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g2120 - - - 0.0