Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g2138 ATGGCTGAAGGTATTGAATCCTACGACCATGTCCCTCAACAGAGCCGCCGCGACAAGCTCCGGGAACATCCCGACCACCACCGTTCCAATTTCCTCCCTTTTTACGACCCTTCTTCTTCCGACTCCTCCAATCGCTTCCAATTTCACCACCATCCCTTTTTCGACCCCCAAATCCCATCCCCTCTTTTACCCGAAATCCATTCTTTCCCAGCTGAGCCTCTCTCCCTTTCCCTTTCCTCTCACCCCTTTCTCGCTTCCCCTATTCCCTCTCCTCTCCCTCTCGGCCCTTTCACCGGCTACGCTTCCATTTTGAAAGGCTCCAGGTTTCTTAAGCCAGCCCATCACTTGCTACAGGACCTCTGTGATTCTGTTCATTCCTCTTCTTCTTCTCATTCTGCTTTCATCCATGATCCTTCCTCCGATCCCTTCCCCCATTCCCCAATTCTTGACCATCATCCCCTTCCTTCTTCTGATTCTTCTACCCCTCCTCATAAGTCCACCCTTCTTTCAATGCTTGATGAGGTTTACAGGAAATATAAGCAGTACTATCAACAAATCCAGGATGTGATGACATCGTTCGAGTACATCTCTGGGCTCGGGAATGCAGCGCCGTATGCCAACCAGGCTATAAAAGCCATGTACAAGCATTTCAAGTGCTTGAAAAATGCAATTCTAGAGCAACTTCAATTCAATAAAAAGACTCATGGTGACTACAATCAAAGATCCATTCAGAACCCGGGATTTCTCGACCATCAGCCTGTTTGGCGACCACAACGAGGGCTTCCCGAACGGGCAGTAACTGTTCTTCGTGCTTGGCTGTTTGAACATTTTTTGCATCCTTATCCTTCTGACACAGACAAGCTTATGTTAGCAAAACAGACTGGTCTGTCTCGTAGTCAGGTATCTAACTGGTTCATCAATGCAAGAGTGAGGCTTTGGAAGCCGATGGTTGAAGAAATATACATGCTTGAAACCAAGCAGCAAGCACAAAAGAATTTACATAGAGAAGAGCAAAATGCCAACAGGGCAAACGATCATCATAATCCATCGAACTCCCTCGCAATGGATAACCCTTCTACATCTGCTCAACAAATTCAAGATACTCCTGCCAAACGTGAACCAAATGACATGCCAATGGGAAATCAAGTCGAGTCCTTGAACGTATCGTACAACTTGTCGAGCCATCCCCATGTAGGCGCAAACACAAACATTGCAGGCAACAACAGCAGTGGAGTTTCCTTAACTCTTGGTCTTCACCAAAACAATGTCATAGGTGGCTTTTCCGAACCCTTCCCAGTAGGGTTCCCTGTTGCAGGTACTCGACGTTTTGGCCTCGGAATCCAAGGTAACAATGACGGGTACGTAATGGGTGGACATTTTAGTAGAGATGTTCTTGGAGGTCAGCTGTTACATGACTTTGTAGGCTGA 1428 46.99 MAEGIESYDHVPQQSRRDKLREHPDHHRSNFLPFYDPSSSDSSNRFQFHHHPFFDPQIPSPLLPEIHSFPAEPLSLSLSSHPFLASPIPSPLPLGPFTGYASILKGSRFLKPAHHLLQDLCDSVHSSSSSHSAFIHDPSSDPFPHSPILDHHPLPSSDSSTPPHKSTLLSMLDEVYRKYKQYYQQIQDVMTSFEYISGLGNAAPYANQAIKAMYKHFKCLKNAILEQLQFNKKTHGDYNQRSIQNPGFLDHQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPSDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIYMLETKQQAQKNLHREEQNANRANDHHNPSNSLAMDNPSTSAQQIQDTPAKREPNDMPMGNQVESLNVSYNLSSHPHVGANTNIAGNNSSGVSLTLGLHQNNVIGGFSEPFPVGFPVAGTRRFGLGIQGNNDGYVMGGHFSRDVLGGQLLHDFVG 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34601680 34604887 - CcPI632755_10g021380.1 Cco10g2138 191096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g2138 475 MobiDBLite consensus disorder prediction 329 343 - -
Cco10g2138 475 FunFam BEL1-like homeodomain protein 9 258 320 - -
Cco10g2138 475 Gene3D - 258 320 - -
Cco10g2138 475 MobiDBLite consensus disorder prediction 1 38 - -
Cco10g2138 475 ProSiteProfiles 'Homeobox' domain profile. 252 315 IPR001356 GO:0003677(InterPro)
Cco10g2138 475 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 41 358 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cco10g2138 475 MobiDBLite consensus disorder prediction 329 382 - -
Cco10g2138 475 MobiDBLite consensus disorder prediction 145 164 - -
Cco10g2138 475 SUPERFAMILY Homeodomain-like 257 322 IPR009057 -
Cco10g2138 475 Pfam Homeobox KN domain 272 311 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco10g2138 475 MobiDBLite consensus disorder prediction 344 370 - -
Cco10g2138 475 CDD homeodomain 255 316 IPR001356 GO:0003677(InterPro)
Cco10g2138 475 SMART prehox3 98 226 IPR006563 -
Cco10g2138 475 Coils Coil 326 346 - -
Cco10g2138 475 Pfam Associated with HOX 103 224 IPR006563 -
Cco10g2138 475 SMART HOX_1 255 319 IPR001356 GO:0003677(InterPro)
Cco10g2138 475 MobiDBLite consensus disorder prediction 10 30 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g1818 Cco-Chr10:31809157 Cco10g2138 Cco-Chr10:34601680 2.50E-49 dispersed
Cco10g2138 Cco-Chr10:34601680 Cco11g0420 Cco-Chr11:4344386 2.20E-49 dispersed
Cco03g0301 Cco-Chr3:3333136 Cco10g2138 Cco-Chr10:34601680 3.30E-63 transposed
Cco10g2138 Cco-Chr10:34601680 Cco04g0963 Cco-Chr4:25281301 1.00E-83 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60196 PF07526 POX 5.80E-29 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g2138 - - - 0.0