Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g2174 ATGGAGGTCGAGAGAGAAGAAGATGTAAGAGTGGGAGTGAATAGGTTCGAAGAGAGGCAGGCGATCGGGACGGTAGCTCGGAAGGACTATCGAGAGCCGCCCTCGGCGCCGCTGTTCGAGGGCGGAGAGTTAGGTTCATGGTCATTCTATAGGGCTGGGATTGCAGAGTTTGTAGGGAGTTTGTTGTTCCTTTATGTGAGTGTAATGACTATAATGGGTGTGGCCAAAGCTCCAAATAAGTGTTCCACCGTTGGAGTCCAAGGCATTGCTTGGGCCTTTGGTGGAATCATCTTTGTTCTTGTCTATTGCACAGCTGGTATTTCAGGTGGCCACATAAACCCAGCAGTCACATTGGGGCTATTACTAGCAAGGAAGTTGTCGCTCGCAAGGGCGGTTTATTACATTATAATGCAGTGCCTTGGCGCCATCTGCGGCGCCGCCGTTGTCAAAGCCTTCGAAAAAGGACCTTTCGAGCGGCTCGGCGGCGGCGCCAACACCGTTAATGAAGGCTACTCTAACACAGCTGCCCTCGGAGCTGAAATCGTCGGCACATTTCTGCTTGTTTACACCGTCTTTTCAGCCACCGATGCAAAGCGAAATGCTCGAGATTCCCACGTTCCCATGTTGGCTCCTCTGCCGATTGGGTTTGCGGTGTTTTTGGTGCATTTAGCCACCATTCCGATCACCGGAACCGGCATTAATCCGGCGAGAAGCCTCGGCGCCGCCATTATTTACAACCGTCACCAAGGCTGGCATGACCATTGGGTGTTTTGGGCAGGGCCGTTGATCGGGGCAGCACTTGCAGCTTTGTACCATCAGACGGTGATCAGGGCCATCCCATTTAAGTCCAAATGA 855 52.63 MEVEREEDVRVGVNRFEERQAIGTVARKDYREPPSAPLFEGGELGSWSFYRAGIAEFVGSLLFLYVSVMTIMGVAKAPNKCSTVGVQGIAWAFGGIIFVLVYCTAGISGGHINPAVTLGLLLARKLSLARAVYYIIMQCLGAICGAAVVKAFEKGPFERLGGGANTVNEGYSNTAALGAEIVGTFLLVYTVFSATDAKRNARDSHVPMLAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRHQGWHDHWVFWAGPLIGAALAALYHQTVIRAIPFKSK 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34890411 34892850 - CcPI632755_10g021740.1 Cco10g2174 191132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g2174 284 SUPERFAMILY Aquaporin-like 46 277 IPR023271 -
Cco10g2174 284 FunFam Probable aquaporin PIP1-2 36 284 - -
Cco10g2174 284 ProSitePatterns MIP family signature. 111 119 IPR022357 -
Cco10g2174 284 Pfam Major intrinsic protein 44 272 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco10g2174 284 CDD MIP 51 275 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco10g2174 284 NCBIfam MIP family channel protein 55 272 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco10g2174 284 Gene3D Glycerol uptake facilitator protein. 36 283 IPR023271 -
Cco10g2174 284 PRINTS Major intrinsic protein family signature 215 237 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco10g2174 284 PRINTS Major intrinsic protein family signature 255 275 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco10g2174 284 PRINTS Major intrinsic protein family signature 179 197 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco10g2174 284 PRINTS Major intrinsic protein family signature 93 117 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco10g2174 284 PRINTS Major intrinsic protein family signature 51 70 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco10g2174 284 PRINTS Major intrinsic protein family signature 130 149 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco10g2174 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 6 283 IPR034294 GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009414(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0415 Cco-Chr7:4549388 Cco10g2174 Cco-Chr10:34890411 1.50E-125 dispersed
Cco08g0888 Cco-Chr8:20756617 Cco10g2174 Cco-Chr10:34890411 4.00E-99 dispersed
Cco10g2017 Cco-Chr10:33662070 Cco10g2174 Cco-Chr10:34890411 5.10E-94 dispersed
Cco04g2184 Cco-Chr4:35524810 Cco10g2174 Cco-Chr10:34890411 4.40E-18 transposed
Cco05g1269 Cco-Chr5:12511338 Cco10g2174 Cco-Chr10:34890411 1.20E-17 transposed
Cco05g0635 Cco-Chr5:5170595 Cco10g2174 Cco-Chr10:34890411 1.30E-14 transposed
Cco10g2174 Cco-Chr10:34890411 Cco07g0414 Cco-Chr7:4543352 1.00E-123 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g2174 K09872 - vvi:100233000 454.136