Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g2181 ATGATCTTGGCCTTTTCAAGTATACTTTGTTCAACAGATGAATTGGATCGCTCTGCTCTACTTGACTTGAAAGGTAGAGTACTGGAGGACCCACTAAAAATCATGAGTTCTTGGAATGATTCCACGCATTTCTGTGAATGGATCGGTGTTACTTGCAACTCCACCATTAGAAGAGTAGTGGCTTTGGACTTGGAAGCTGGAGATCTAACCGGTTCTATACCTCCTTCCTTGGGAAATCTCACTTACCTAACTAAAATCAGTTTGGGAGTCAACAAATTGTATGGCCCAATTCCCCAAGAGTTGGGTCGTTTACTTCAATTACGTTTTCTCAATTTATCCTACAATAACTTTGGCGGTGAGTTTCCAGCAAATATAAGTCATTGCAGTGAGTTGGTTGGTTTGGAGATTAGTGGCAATGAGTTTGTAGGCCAAATTCCACACCAATTGTCCACATTGACCAAGTTGGAACGATTCATGTTCGGCATCAACAATCTGAGTGGAACTATTCCACCTTGGGTAGGAAATTTTTCTTCGATATTGGCTTTGTCATTTGGGCGGAACAACTTTCAGGGAGGCATTCCAAGTGAAATAGGACGTCTATCTAAAATGGAATTCTTCTCAGTTATTTCAAATAAATTGACAGGTACAATGCCAATTTCAATCTACAATATCAGTTCTCTGACTCTCTTTCATTTTACTGAAAATCAATTGCAAGGAAGTCTACCACCAAATATTGGATTTACTCTTCCCAATCTTCAGACATTTGCTGGTGGTATTAATAATTTTGATGGGCCTATTCCAAAGTCCTTGACTAATATCTCTAGCCTTCAAATCTTAGATTTTCCAAATAACAATCTTGTTGGAATGATACCTGATGACATAGGGAGATTAAAACACCTTCAGCGTCTAAATTTTGGATCAAATAATCTTGGAAGTGGAAAAATTGGTGATCTAAATTTTATTAATTCCTTGGTTAATTGTACTAAGCTAAGGACTTTGGGTTTAAATACGAACCATTTTGGAGGACCATTACCTTCGTCCATTGCCAACCTTTCAAACCAGCTAGAAGCTATAACCTTGGGTGATAATATGTTAAGTGGAAGCATTCCTTTAGGGATTACAAACTTGATTAACTTGCAAGTTCTTGCAATGGAAGGCAACATGATGAATGGTAGCATCCCTCCCAATATAGGGAGCCTTAAAAATTTAGTGCTTTTGTACTTGGGTGGAAACGGATTAACTGGGCCAATCCCTTCCTCCATTGGTAACTTAACTTCACTCACCAACCTCTACTTGAGTTATAACAAACATGACGGACGTATACCAACAAGCTTAGGGGAATGCAAAACCCTCCTATCTCTTCAGCTATCTGGTAACAACCTAACCCGCGCCATACCAAAACAAATCTTTGGAATCCTTTCCCTTTCCATCACTTTGGCCTTAGATCATAACTCATTTACTGGTTCATTGCCAAATGAAGTGGGTGGGTTACTTAGTTTATTAGAACTGGATGTATCAGAAAACAAATTATCAGGTGATATTCCTAGCAACCTCGGAAAATGTACTAGCATGGAACGATTGTATCTTGGGGGAAACCAATTTAGGGGAACAATCCCTCAATCTTTAGAAACTTTAAATAGCCTTGTACAACTAAATTTATCAAGAAACAACTTGACAGGGTCGATTCCCCAATTTCTTGGTAAACTTCTTTCGCTCGTGTATCTCGATTTATCCTACAATAACTTTGTAGGAAAAGTGCCAGAAGAAGGAGTTTTTTCCAACTCAACAATGTTTTCTATCCTGGGGAATAACAATGTGTGTGATGGTTTACAAGAATTACATCTACCTCCATGCACGTCTAATCAAACACATTCATCAAAGTTACTAATCCCTATAGCATCTGCAGTCGCATTCGTTGTTTTTTTGGTCAGCTTCTTTTTTGTGTGTTTTCTCTTTAACAAGTCGAGGAAGGATACTTCAACTTCATCTTCATCTTTTGCAAAGGAGTTTCTACCACAAATTTCTTACTTGGAACTTAGTAAAGCAACCCACGGATTCTCTATGGATAATTTTATTGGTTCTGGTAGTTTTGGCACTGTGTATAAAGGTGTTCTTTCAAATGATGGATCTATTGTTGCAATTAAAGTTTTGAATCTCCAACAACAAGGTGCTTCCCAGAGTTTTGTTGATGAATGCAACACCCTCTCAAACATACGACATCGAAATCTCCTCAAGATCATAACTTCTTGCTCAAGTATTGATGTACACGGCAATGAATTTAAAGCTCTAGTTTTCAATTTTATGTCAAATGGAAATCTTGATAGTTGGCTTCATCCAACAAACCAAGGGAACAACCAAAGGAGGTTAAGTCTCATCCAAAGATTGAACATTGCCATTGATATTGCATATGGATTAGACTATCTCCATAATCATTGTGAAATAGACTCCTATTGTTCATTGTGA 2463 37.92 MILAFSSILCSTDELDRSALLDLKGRVLEDPLKIMSSWNDSTHFCEWIGVTCNSTIRRVVALDLEAGDLTGSIPPSLGNLTYLTKISLGVNKLYGPIPQELGRLLQLRFLNLSYNNFGGEFPANISHCSELVGLEISGNEFVGQIPHQLSTLTKLERFMFGINNLSGTIPPWVGNFSSILALSFGRNNFQGGIPSEIGRLSKMEFFSVISNKLTGTMPISIYNISSLTLFHFTENQLQGSLPPNIGFTLPNLQTFAGGINNFDGPIPKSLTNISSLQILDFPNNNLVGMIPDDIGRLKHLQRLNFGSNNLGSGKIGDLNFINSLVNCTKLRTLGLNTNHFGGPLPSSIANLSNQLEAITLGDNMLSGSIPLGITNLINLQVLAMEGNMMNGSIPPNIGSLKNLVLLYLGGNGLTGPIPSSIGNLTSLTNLYLSYNKHDGRIPTSLGECKTLLSLQLSGNNLTRAIPKQIFGILSLSITLALDHNSFTGSLPNEVGGLLSLLELDVSENKLSGDIPSNLGKCTSMERLYLGGNQFRGTIPQSLETLNSLVQLNLSRNNLTGSIPQFLGKLLSLVYLDLSYNNFVGKVPEEGVFSNSTMFSILGNNNVCDGLQELHLPPCTSNQTHSSKLLIPIASAVAFVVFLVSFFFVCFLFNKSRKDTSTSSSSFAKEFLPQISYLELSKATHGFSMDNFIGSGSFGTVYKGVLSNDGSIVAIKVLNLQQQGASQSFVDECNTLSNIRHRNLLKIITSCSSIDVHGNEFKALVFNFMSNGNLDSWLHPTNQGNNQRRLSLIQRLNIAIDIAYGLDYLHNHCEIDSYCSL 820
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34947520 34949982 + CcPI632755_10g021810.1 Cco10g2181 191139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g2181 820 Gene3D Transferase(Phosphotransferase) domain 1 768 816 - -
Cco10g2181 820 Gene3D Ribonuclease Inhibitor 164 247 IPR032675 -
Cco10g2181 820 SUPERFAMILY L domain-like 10 310 - -
Cco10g2181 820 SUPERFAMILY Protein kinase-like (PK-like) 660 812 IPR011009 -
Cco10g2181 820 Gene3D Ribonuclease Inhibitor 319 621 IPR032675 -
Cco10g2181 820 FunFam LRR receptor-like serine/threonine-protein kinase EFR 321 624 - -
Cco10g2181 820 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 53 320 - -
Cco10g2181 820 Pfam Leucine Rich Repeat 499 521 IPR001611 GO:0005515(InterPro)
Cco10g2181 820 Pfam Leucine Rich Repeat 275 297 IPR001611 GO:0005515(InterPro)
Cco10g2181 820 Pfam Leucine Rich Repeat 106 128 IPR001611 GO:0005515(InterPro)
Cco10g2181 820 Pfam Leucine Rich Repeat 426 448 IPR001611 GO:0005515(InterPro)
Cco10g2181 820 Pfam Leucine Rich Repeat 402 424 IPR001611 GO:0005515(InterPro)
Cco10g2181 820 PANTHER OS04G0122200 PROTEIN 28 813 IPR051809 -
Cco10g2181 820 Pfam Protein tyrosine and serine/threonine kinase 688 811 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g2181 820 Pfam Leucine rich repeat N-terminal domain 16 53 IPR013210 -
Cco10g2181 820 SMART serkin_6 686 820 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g2181 820 Pfam Leucine rich repeat 523 582 IPR001611 GO:0005515(InterPro)
Cco10g2181 820 SMART LRR_typ_2 273 297 IPR003591 -
Cco10g2181 820 SMART LRR_typ_2 400 424 IPR003591 -
Cco10g2181 820 SMART LRR_typ_2 497 521 IPR003591 -
Cco10g2181 820 SMART LRR_typ_2 104 128 IPR003591 -
Cco10g2181 820 SMART LRR_typ_2 545 568 IPR003591 -
Cco10g2181 820 SMART LRR_typ_2 569 594 IPR003591 -
Cco10g2181 820 SUPERFAMILY L domain-like 353 608 - -
Cco10g2181 820 ProSiteProfiles Protein kinase domain profile. 686 820 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g2181 820 ProSitePatterns Protein kinases ATP-binding region signature. 692 715 IPR017441 GO:0005524(InterPro)
Cco10g2181 820 FunFam LRR receptor-like serine/threonine-protein kinase EFR 657 767 - -
Cco10g2181 820 Gene3D Ribonuclease Inhibitor 13 163 IPR032675 -
Cco10g2181 820 Gene3D Phosphorylase Kinase; domain 1 648 767 - -
Cco10g2181 820 Gene3D Ribonuclease Inhibitor 248 318 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g2179 Cco-Chr10:34934704 Cco10g2181 Cco-Chr10:34947520 1.70E-114 dispersed
Cco10g2181 Cco-Chr10:34947520 Cco11g0630 Cco-Chr11:6840316 1.10E-56 dispersed
Cco10g2180 Cco-Chr10:34942985 Cco10g2181 Cco-Chr10:34947520 1.40E-16 tandem
Cco10g2181 Cco-Chr10:34947520 Cco05g0994 Cco-Chr5:8762956 4.00E-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87190 PF07714 PK_Tyr_Ser-Thr 1.70E-18 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g2181 - - - 0.0