Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g2184 ATGGGGCCGTTAAAGGTTGAAGAAAGGGATGAACCCGCAGAAGGAATTGCTGTTACCAACAATGTACGCATCTTTTCTTATAATTCACTGAGGTCAGCAACTAGGAATTTTCATCCATCAACCAGAATAGGTGCTGGAGGTTATGGAGTTGTCTACAAAGGAGTTTTAAGGGATGGCACCAATGTTGCAGTCAAATCACTGTCTGCAGAATCAGCTCAGGGAACTCGTGAATTCTTAACCGAGATAAATATGATATCAAATATAAGACATCAACATCTCGTTGAACTGATTGGTTGTTGTGTAGAAGGCACACATCGAATTTTGGTGTATGAATACCTGGAAAACAACAGCCTTGCGAGTACTTTGCTTGGTACAATGAGTAAGCATGTCATTCTGGATTGGCCAAAGAGAGCTAAGATTTGTCTTGGTACAGCTTTGGGTCTTGCATACCTACATGAGGAAGCTGAATATTCTGTTGTTCATAGAGATATCAAGGCTAGCAATATACTTCTTGACAGAAACTTTGATCCTAAAATAGGAGACTTTGGGTTGGCTAAACTTTTCCCAGATAACGTTACTCATGTTAGCACTCGAGTGGCCGGAACTGTTGGATATCTGGCCCCCGAGTATGCACTTTTAGGACAGTTGACAAAGAAGGCAGATGTATACAGTTTTGGTGTGCTCATGCTGGAAATAGTTAGTGGAAGTAGCAGCAGTAAAACAGCATTTGGAGAAGAGTTGTCAATGCTCGTGGAATGGACTTGGAAATTAAGACAAGAAGGACGGCTTGTAGAACTAATCGATCCGGAACTGGTCGATTATCCGAAGGCTGAGGTGATGCGTTTCATCACAGTTGCACTCTTCTGTACCCAAGCAGCTGCAAATCAAAGGCCAACCATGAAGCAGGTTGTGGAAATGCTTTCAAGAGAGGTACACCTTAATGAAAAACTATTGACAGAGCCAGGAGTATACAAAGCACACAAAACTAGGAAGTTAAATTGTGCTGGTACAAGTTCTGAGGGGATTTCATTCTCCCATGGAGACAGAGATACAATCCTCCAATTTATTGTCAAAGCTTGTTCTATTAGGTGTAAAGTGGAGAGAGCATCATCCCATGTTTCAGTGGAGGATCTAAACTGTGAAGAGTGA 1149 41.95 MGPLKVEERDEPAEGIAVTNNVRIFSYNSLRSATRNFHPSTRIGAGGYGVVYKGVLRDGTNVAVKSLSAESAQGTREFLTEINMISNIRHQHLVELIGCCVEGTHRILVYEYLENNSLASTLLGTMSKHVILDWPKRAKICLGTALGLAYLHEEAEYSVVHRDIKASNILLDRNFDPKIGDFGLAKLFPDNVTHVSTRVAGTVGYLAPEYALLGQLTKKADVYSFGVLMLEIVSGSSSSKTAFGEELSMLVEWTWKLRQEGRLVELIDPELVDYPKAEVMRFITVALFCTQAAANQRPTMKQVVEMLSREVHLNEKLLTEPGVYKAHKTRKLNCAGTSSEGISFSHGDRDTILQFIVKACSIRCKVERASSHVSVEDLNCEE 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34958252 34963107 - CcPI632755_10g021840.1 Cco10g2184 191142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g2184 382 FunFam cold-responsive protein kinase 1 7 112 - -
Cco10g2184 382 SMART serkin_6 37 307 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g2184 382 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g2184 382 ProSitePatterns Protein kinases ATP-binding region signature. 43 65 IPR017441 GO:0005524(InterPro)
Cco10g2184 382 Gene3D Transferase(Phosphotransferase) domain 1 113 322 - -
Cco10g2184 382 SUPERFAMILY Protein kinase-like (PK-like) 18 307 IPR011009 -
Cco10g2184 382 CDD STKc_IRAK 43 309 - -
Cco10g2184 382 FunFam Putative LRR receptor-like serine/threonine-protein kinase 113 319 - -
Cco10g2184 382 Pfam Protein tyrosine and serine/threonine kinase 41 307 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g2184 382 Gene3D Phosphorylase Kinase; domain 1 7 112 - -
Cco10g2184 382 ProSiteProfiles Protein kinase domain profile. 37 313 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g2184 382 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 19 340 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1143 Cco-Chr7:25145907 Cco10g2184 Cco-Chr10:34958252 2.40E-92 dispersed
Cco09g0637 Cco-Chr9:5649545 Cco10g2184 Cco-Chr10:34958252 1.60E-73 dispersed
Cco10g1386 Cco-Chr10:26924363 Cco10g2184 Cco-Chr10:34958252 3.00E-73 dispersed
Cco10g2184 Cco-Chr10:34958252 Cco11g1783 Cco-Chr11:30552622 5.70E-93 dispersed
Cco03g0605 Cco-Chr3:6168150 Cco10g2184 Cco-Chr10:34958252 4.70E-114 transposed
Cco01g1699 Cco-Chr1:29716306 Cco10g2184 Cco-Chr10:34958252 1.10E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87192 PF07714 PK_Tyr_Ser-Thr 1.40E-46 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g2184 - - - 0.0